data_6X1Y # _model_server_result.job_id MZ1STrF_vuY2aGuses7DVg _model_server_result.datetime_utc '2024-10-19 21:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 6X1Y # _exptl.entry_id 6X1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.325 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5Z)-5-[(3-methoxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.934 _cell.angle_gamma 90 _cell.entry_id 6X1Y _cell.length_a 47.199 _cell.length_b 109.147 _cell.length_c 75.996 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_343 -x-2,y-1/2,-z-2 -1 0 0 0 1 0 0 0 -1 -68.177306 -54.5735 -149.713203 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C11 H9 N O2 S2' _chem_comp.formula_weight 251.325 _chem_comp.id UKV _chem_comp.mon_nstd_flag . _chem_comp.name (5Z)-5-[(3-methoxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAI CAO UKV sing 383 n n NAI CAN UKV sing 384 n n SAC CAO UKV doub 385 n n OAB CAN UKV doub 386 n n CAO SAK UKV sing 387 n n CAN CAP UKV sing 388 n n CAP SAK UKV sing 389 n n CAP CAD UKV doub 390 z n CAD CAL UKV sing 391 n n CAL CAF UKV doub 392 n y CAL CAH UKV sing 393 n y CAF CAE UKV sing 394 n y CAH CAM UKV doub 395 n y CAE CAG UKV doub 396 n y CAM CAG UKV sing 397 n y CAM OAJ UKV sing 398 n n CAA OAJ UKV sing 399 n n CAA H1 UKV sing 400 n n CAA H2 UKV sing 401 n n CAA H3 UKV sing 402 n n CAD H4 UKV sing 403 n n CAE H6 UKV sing 404 n n CAF H7 UKV sing 405 n n CAG H8 UKV sing 406 n n CAH H9 UKV sing 407 n n NAI H10 UKV sing 408 n n # _atom_sites.entry_id 6X1Y _atom_sites.fract_transf_matrix[1][1] 0.021187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003711 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MES A 1 801 801 MES MES . D 3 UKV A 1 802 501 UKV DRG . E 2 MES B 1 801 801 MES MES . F 3 UKV B 1 802 501 UKV DRG . G 4 HOH A 1 901 38 HOH HOH . G 4 HOH A 2 902 59 HOH HOH . G 4 HOH A 3 903 61 HOH HOH . G 4 HOH A 4 904 39 HOH HOH . G 4 HOH A 5 905 65 HOH HOH . G 4 HOH A 6 906 64 HOH HOH . G 4 HOH A 7 907 26 HOH HOH . G 4 HOH A 8 908 14 HOH HOH . G 4 HOH A 9 909 2 HOH HOH . G 4 HOH A 10 910 37 HOH HOH . G 4 HOH A 11 911 45 HOH HOH . G 4 HOH A 12 912 60 HOH HOH . G 4 HOH A 13 913 89 HOH HOH . G 4 HOH A 14 914 62 HOH HOH . G 4 HOH A 15 915 1 HOH HOH . G 4 HOH A 16 916 18 HOH HOH . G 4 HOH A 17 917 48 HOH HOH . G 4 HOH A 18 918 17 HOH HOH . G 4 HOH A 19 919 53 HOH HOH . G 4 HOH A 20 920 20 HOH HOH . G 4 HOH A 21 921 49 HOH HOH . G 4 HOH A 22 922 5 HOH HOH . G 4 HOH A 23 923 6 HOH HOH . G 4 HOH A 24 924 23 HOH HOH . G 4 HOH A 25 925 7 HOH HOH . G 4 HOH A 26 926 80 HOH HOH . G 4 HOH A 27 927 701 HOH HOH . G 4 HOH A 28 928 4 HOH HOH . G 4 HOH A 29 929 83 HOH HOH . G 4 HOH A 30 930 54 HOH HOH . G 4 HOH A 31 931 30 HOH HOH . G 4 HOH A 32 932 47 HOH HOH . G 4 HOH A 33 933 56 HOH HOH . G 4 HOH A 34 934 86 HOH HOH . H 4 HOH B 1 901 87 HOH HOH . H 4 HOH B 2 902 31 HOH HOH . H 4 HOH B 3 903 79 HOH HOH . H 4 HOH B 4 904 42 HOH HOH . H 4 HOH B 5 905 13 HOH HOH . H 4 HOH B 6 906 74 HOH HOH . H 4 HOH B 7 907 41 HOH HOH . H 4 HOH B 8 908 70 HOH HOH . H 4 HOH B 9 909 75 HOH HOH . H 4 HOH B 10 910 66 HOH HOH . H 4 HOH B 11 911 9 HOH HOH . H 4 HOH B 12 912 29 HOH HOH . H 4 HOH B 13 913 28 HOH HOH . H 4 HOH B 14 914 63 HOH HOH . H 4 HOH B 15 915 40 HOH HOH . H 4 HOH B 16 916 24 HOH HOH . H 4 HOH B 17 917 19 HOH HOH . H 4 HOH B 18 918 11 HOH HOH . H 4 HOH B 19 919 84 HOH HOH . H 4 HOH B 20 920 8 HOH HOH . H 4 HOH B 21 921 71 HOH HOH . H 4 HOH B 22 922 77 HOH HOH . H 4 HOH B 23 923 33 HOH HOH . H 4 HOH B 24 924 36 HOH HOH . H 4 HOH B 25 925 22 HOH HOH . H 4 HOH B 26 926 73 HOH HOH . H 4 HOH B 27 927 68 HOH HOH . H 4 HOH B 28 928 12 HOH HOH . H 4 HOH B 29 929 15 HOH HOH . H 4 HOH B 30 930 16 HOH HOH . H 4 HOH B 31 931 21 HOH HOH . H 4 HOH B 32 932 67 HOH HOH . H 4 HOH B 33 933 44 HOH HOH . H 4 HOH B 34 934 46 HOH HOH . H 4 HOH B 35 935 34 HOH HOH . H 4 HOH B 36 936 82 HOH HOH . H 4 HOH B 37 937 10 HOH HOH . H 4 HOH B 38 938 57 HOH HOH . H 4 HOH B 39 939 52 HOH HOH . H 4 HOH B 40 940 32 HOH HOH . H 4 HOH B 41 941 27 HOH HOH . H 4 HOH B 42 942 701 HOH HOH . H 4 HOH B 43 943 50 HOH HOH . H 4 HOH B 44 944 81 HOH HOH . H 4 HOH B 45 945 3 HOH HOH . H 4 HOH B 46 946 72 HOH HOH . H 4 HOH B 47 947 69 HOH HOH . H 4 HOH B 48 948 58 HOH HOH . H 4 HOH B 49 949 51 HOH HOH . H 4 HOH B 50 950 55 HOH HOH . H 4 HOH B 51 951 78 HOH HOH . H 4 HOH B 52 952 35 HOH HOH . H 4 HOH B 53 953 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA UKV . . . D 3 -30.375 459.252 -100.478 1 82.35 ? CAA UKV 802 A 1 HETATM 2 C CAD UKV . . . D 3 -28.499 455.624 -103.335 1 70.48 ? CAD UKV 802 A 1 HETATM 3 C CAE UKV . . . D 3 -30.727 454.538 -100.647 1 71.06 ? CAE UKV 802 A 1 HETATM 4 C CAF UKV . . . D 3 -29.862 454.555 -101.732 1 71.93 ? CAF UKV 802 A 1 HETATM 5 C CAG UKV . . . D 3 -31.093 455.727 -100.031 1 74.75 ? CAG UKV 802 A 1 HETATM 6 C CAH UKV . . . D 3 -29.734 456.937 -101.603 1 81.04 ? CAH UKV 802 A 1 HETATM 7 C CAL UKV . . . D 3 -29.364 455.75 -102.237 1 72.74 ? CAL UKV 802 A 1 HETATM 8 C CAM UKV . . . D 3 -30.601 456.934 -100.512 1 82.96 ? CAM UKV 802 A 1 HETATM 9 C CAN UKV . . . D 3 -27.099 456.416 -105.025 1 71.36 ? CAN UKV 802 A 1 HETATM 10 C CAO UKV . . . D 3 -27.036 458.653 -105.067 1 72.1 ? CAO UKV 802 A 1 HETATM 11 C CAP UKV . . . D 3 -27.924 456.643 -103.997 1 75.27 ? CAP UKV 802 A 1 HETATM 12 N NAI UKV . . . D 3 -26.596 457.517 -105.616 1 66.93 ? NAI UKV 802 A 1 HETATM 13 O OAB UKV . . . D 3 -26.802 455.281 -105.393 1 76.5 ? OAB UKV 802 A 1 HETATM 14 O OAJ UKV . . . D 3 -30.971 458.092 -99.889 1 85.67 ? OAJ UKV 802 A 1 HETATM 15 S SAC UKV . . . D 3 -26.595 460.242 -105.583 1 74.31 ? SAC UKV 802 A 1 HETATM 16 S SAK UKV . . . D 3 -28.055 458.309 -103.833 1 79.53 ? SAK UKV 802 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #