data_6X28 # _model_server_result.job_id iyqZGDFyNA4gpfIm6pZxyg _model_server_result.datetime_utc '2024-11-14 03:01:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6X28 # _exptl.entry_id 6X28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.249 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R)-4-(3,5-difluorophenoxy)-7-(trifluoromethyl)-2,3-dihydro-1H-inden-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.42 _cell.angle_gamma 90 _cell.entry_id 6X28 _cell.length_a 73.189 _cell.length_b 83.787 _cell.length_c 41.408 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_544 -x+1/2,y-1/2,-z-1 -1 0 0 0 1 0 0 0 -1 48.29956 -41.8935 -39.71919 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H11 F5 O2' _chem_comp.formula_weight 330.249 _chem_comp.id ULG _chem_comp.mon_nstd_flag . _chem_comp.name (1R)-4-(3,5-difluorophenoxy)-7-(trifluoromethyl)-2,3-dihydro-1H-inden-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C14 ULG sing 358 n n C10 C11 ULG sing 359 n n C14 C13 ULG sing 360 n n C11 O1 ULG sing 361 n n C11 C12 ULG sing 362 n n O C7 ULG sing 363 n n O C ULG sing 364 n n C13 C12 ULG doub 365 n y C13 C ULG sing 366 n y C8 C7 ULG doub 367 n y C8 C9 ULG sing 368 n y C7 C6 ULG sing 369 n y F1 C9 ULG sing 370 n n C12 C3 ULG sing 371 n y C9 C4 ULG doub 372 n y C C1 ULG doub 373 n y C6 C5 ULG doub 374 n y C4 C5 ULG sing 375 n y C5 F ULG sing 376 n n C1 C2 ULG sing 377 n y C3 C2 ULG doub 378 n y C3 C15 ULG sing 379 n n F2 C15 ULG sing 380 n n F4 C15 ULG sing 381 n n C15 F3 ULG sing 382 n n C2 H1 ULG sing 383 n n C1 H2 ULG sing 384 n n C11 H3 ULG sing 385 n n O1 H4 ULG sing 386 n n C14 H5 ULG sing 387 n n C14 H6 ULG sing 388 n n C10 H7 ULG sing 389 n n C10 H8 ULG sing 390 n n C6 H9 ULG sing 391 n n C8 H10 ULG sing 392 n n C4 H11 ULG sing 393 n n # _atom_sites.entry_id 6X28 _atom_sites.fract_transf_matrix[1][1] 0.013663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ULG A 1 401 1 ULG unk . D 4 HOH A 1 501 28 HOH HOH . D 4 HOH A 2 502 27 HOH HOH . D 4 HOH A 3 503 7 HOH HOH . D 4 HOH A 4 504 6 HOH HOH . D 4 HOH A 5 505 8 HOH HOH . D 4 HOH A 6 506 25 HOH HOH . D 4 HOH A 7 507 22 HOH HOH . D 4 HOH A 8 508 4 HOH HOH . E 4 HOH B 1 501 15 HOH HOH . E 4 HOH B 2 502 17 HOH HOH . E 4 HOH B 3 503 12 HOH HOH . E 4 HOH B 4 504 23 HOH HOH . E 4 HOH B 5 505 18 HOH HOH . E 4 HOH B 6 506 26 HOH HOH . E 4 HOH B 7 507 3 HOH HOH . E 4 HOH B 8 508 16 HOH HOH . E 4 HOH B 9 509 21 HOH HOH . E 4 HOH B 10 510 5 HOH HOH . E 4 HOH B 11 511 2 HOH HOH . E 4 HOH B 12 512 20 HOH HOH . E 4 HOH B 13 513 13 HOH HOH . E 4 HOH B 14 514 1 HOH HOH . E 4 HOH B 15 515 11 HOH HOH . E 4 HOH B 16 516 24 HOH HOH . E 4 HOH B 17 517 9 HOH HOH . E 4 HOH B 18 518 10 HOH HOH . E 4 HOH B 19 519 29 HOH HOH . E 4 HOH B 20 520 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F4 ULG . . . C 3 27.853 0.64 -8.618 1 32.82 ? F4 ULG 401 A 1 HETATM 2 C C15 ULG . . . C 3 27.209 -0.515 -8.521 1 31.37 ? C15 ULG 401 A 1 HETATM 3 F F2 ULG . . . C 3 28.096 -1.29 -9.051 1 32.95 ? F2 ULG 401 A 1 HETATM 4 F F3 ULG . . . C 3 27.045 -0.487 -7.276 1 28.17 ? F3 ULG 401 A 1 HETATM 5 C C3 ULG . . . C 3 25.999 -0.341 -9.332 1 26.94 ? C3 ULG 401 A 1 HETATM 6 C C2 ULG . . . C 3 24.799 -0.71 -8.685 1 25.69 ? C2 ULG 401 A 1 HETATM 7 C C1 ULG . . . C 3 23.618 -0.626 -9.397 1 25.03 ? C1 ULG 401 A 1 HETATM 8 C C12 ULG . . . C 3 26.035 0.073 -10.747 1 26.26 ? C12 ULG 401 A 1 HETATM 9 C C11 ULG . . . C 3 27.088 0.505 -11.694 1 27.73 ? C11 ULG 401 A 1 HETATM 10 O O1 ULG . . . C 3 27.38 1.851 -11.348 1 31.86 ? O1 ULG 401 A 1 HETATM 11 C C13 ULG . . . C 3 24.775 0.159 -11.445 1 22.41 ? C13 ULG 401 A 1 HETATM 12 C C14 ULG . . . C 3 24.874 0.595 -12.891 1 21.73 ? C14 ULG 401 A 1 HETATM 13 C C10 ULG . . . C 3 26.41 0.629 -13.072 1 26.81 ? C10 ULG 401 A 1 HETATM 14 C C ULG . . . C 3 23.603 -0.217 -10.72 1 22.6 ? C ULG 401 A 1 HETATM 15 O O ULG . . . C 3 22.495 -0.149 -11.476 1 20.54 ? O ULG 401 A 1 HETATM 16 C C7 ULG . . . C 3 21.299 -0.544 -10.985 1 25.34 ? C7 ULG 401 A 1 HETATM 17 C C6 ULG . . . C 3 20.515 0.424 -10.343 1 27.08 ? C6 ULG 401 A 1 HETATM 18 C C5 ULG . . . C 3 19.268 0.103 -9.865 1 27.21 ? C5 ULG 401 A 1 HETATM 19 F F ULG . . . C 3 18.535 1.042 -9.223 1 32.02 ? F ULG 401 A 1 HETATM 20 C C8 ULG . . . C 3 20.821 -1.811 -11.218 1 22.36 ? C8 ULG 401 A 1 HETATM 21 C C9 ULG . . . C 3 19.553 -2.12 -10.726 1 29.12 ? C9 ULG 401 A 1 HETATM 22 F F1 ULG . . . C 3 19.056 -3.331 -10.924 1 28.23 ? F1 ULG 401 A 1 HETATM 23 C C4 ULG . . . C 3 18.768 -1.186 -10.042 1 27.74 ? C4 ULG 401 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #