data_6X2M # _model_server_result.job_id NEdPDlHIy6ItV9V5bXBADw _model_server_result.datetime_utc '2024-12-22 01:10:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1101}' # _entry.id 6X2M # _exptl.entry_id 6X2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X2M _cell.length_a 105.313 _cell.length_b 105.313 _cell.length_c 306.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc3 D O3G GNP . A GNP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 D O1B GNP . A GNP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 6X2M _atom_sites.fract_transf_matrix[1][1] 0.009496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GNP A 1 301 301 GNP GNP . E 5 MG A 1 302 302 MG MG . F 6 GOL C 1 1101 1 GOL GOL . G 7 HOH A 1 401 53 HOH HOH . G 7 HOH A 2 402 36 HOH HOH . G 7 HOH A 3 403 19 HOH HOH . G 7 HOH A 4 404 30 HOH HOH . G 7 HOH A 5 405 105 HOH HOH . G 7 HOH A 6 406 138 HOH HOH . G 7 HOH A 7 407 33 HOH HOH . G 7 HOH A 8 408 133 HOH HOH . G 7 HOH A 9 409 136 HOH HOH . G 7 HOH A 10 410 51 HOH HOH . G 7 HOH A 11 411 65 HOH HOH . G 7 HOH A 12 412 39 HOH HOH . G 7 HOH A 13 413 68 HOH HOH . G 7 HOH A 14 414 90 HOH HOH . G 7 HOH A 15 415 104 HOH HOH . G 7 HOH A 16 416 99 HOH HOH . G 7 HOH A 17 417 22 HOH HOH . G 7 HOH A 18 418 16 HOH HOH . G 7 HOH A 19 419 24 HOH HOH . G 7 HOH A 20 420 131 HOH HOH . G 7 HOH A 21 421 109 HOH HOH . G 7 HOH A 22 422 12 HOH HOH . G 7 HOH A 23 423 96 HOH HOH . G 7 HOH A 24 424 1 HOH HOH . G 7 HOH A 25 425 115 HOH HOH . H 7 HOH B 1 301 91 HOH HOH . H 7 HOH B 2 302 2 HOH HOH . H 7 HOH B 3 303 125 HOH HOH . H 7 HOH B 4 304 72 HOH HOH . H 7 HOH B 5 305 45 HOH HOH . H 7 HOH B 6 306 10 HOH HOH . H 7 HOH B 7 307 75 HOH HOH . H 7 HOH B 8 308 85 HOH HOH . I 7 HOH C 1 1201 21 HOH HOH . I 7 HOH C 2 1202 5 HOH HOH . I 7 HOH C 3 1203 49 HOH HOH . I 7 HOH C 4 1204 54 HOH HOH . I 7 HOH C 5 1205 84 HOH HOH . I 7 HOH C 6 1206 76 HOH HOH . I 7 HOH C 7 1207 4 HOH HOH . I 7 HOH C 8 1208 14 HOH HOH . I 7 HOH C 9 1209 128 HOH HOH . I 7 HOH C 10 1210 103 HOH HOH . I 7 HOH C 11 1211 63 HOH HOH . I 7 HOH C 12 1212 8 HOH HOH . I 7 HOH C 13 1213 108 HOH HOH . I 7 HOH C 14 1214 13 HOH HOH . I 7 HOH C 15 1215 134 HOH HOH . I 7 HOH C 16 1216 98 HOH HOH . I 7 HOH C 17 1217 92 HOH HOH . I 7 HOH C 18 1218 28 HOH HOH . I 7 HOH C 19 1219 29 HOH HOH . I 7 HOH C 20 1220 52 HOH HOH . I 7 HOH C 21 1221 37 HOH HOH . I 7 HOH C 22 1222 123 HOH HOH . I 7 HOH C 23 1223 34 HOH HOH . I 7 HOH C 24 1224 120 HOH HOH . I 7 HOH C 25 1225 126 HOH HOH . I 7 HOH C 26 1226 106 HOH HOH . I 7 HOH C 27 1227 59 HOH HOH . I 7 HOH C 28 1228 47 HOH HOH . I 7 HOH C 29 1229 94 HOH HOH . I 7 HOH C 30 1230 23 HOH HOH . I 7 HOH C 31 1231 80 HOH HOH . I 7 HOH C 32 1232 61 HOH HOH . I 7 HOH C 33 1233 95 HOH HOH . I 7 HOH C 34 1234 127 HOH HOH . I 7 HOH C 35 1235 97 HOH HOH . I 7 HOH C 36 1236 15 HOH HOH . I 7 HOH C 37 1237 43 HOH HOH . I 7 HOH C 38 1238 83 HOH HOH . I 7 HOH C 39 1239 42 HOH HOH . I 7 HOH C 40 1240 79 HOH HOH . I 7 HOH C 41 1241 60 HOH HOH . I 7 HOH C 42 1242 46 HOH HOH . I 7 HOH C 43 1243 88 HOH HOH . I 7 HOH C 44 1244 40 HOH HOH . I 7 HOH C 45 1245 58 HOH HOH . I 7 HOH C 46 1246 38 HOH HOH . I 7 HOH C 47 1247 118 HOH HOH . I 7 HOH C 48 1248 129 HOH HOH . I 7 HOH C 49 1249 56 HOH HOH . I 7 HOH C 50 1250 70 HOH HOH . I 7 HOH C 51 1251 77 HOH HOH . I 7 HOH C 52 1252 6 HOH HOH . I 7 HOH C 53 1253 81 HOH HOH . I 7 HOH C 54 1254 116 HOH HOH . I 7 HOH C 55 1255 25 HOH HOH . I 7 HOH C 56 1256 3 HOH HOH . I 7 HOH C 57 1257 62 HOH HOH . I 7 HOH C 58 1258 78 HOH HOH . I 7 HOH C 59 1259 67 HOH HOH . I 7 HOH C 60 1260 101 HOH HOH . I 7 HOH C 61 1261 102 HOH HOH . I 7 HOH C 62 1262 89 HOH HOH . I 7 HOH C 63 1263 100 HOH HOH . I 7 HOH C 64 1264 11 HOH HOH . I 7 HOH C 65 1265 122 HOH HOH . I 7 HOH C 66 1266 20 HOH HOH . I 7 HOH C 67 1267 66 HOH HOH . I 7 HOH C 68 1268 82 HOH HOH . I 7 HOH C 69 1269 71 HOH HOH . I 7 HOH C 70 1270 41 HOH HOH . I 7 HOH C 71 1271 44 HOH HOH . I 7 HOH C 72 1272 124 HOH HOH . I 7 HOH C 73 1273 55 HOH HOH . I 7 HOH C 74 1274 119 HOH HOH . I 7 HOH C 75 1275 137 HOH HOH . I 7 HOH C 76 1276 17 HOH HOH . I 7 HOH C 77 1277 121 HOH HOH . I 7 HOH C 78 1278 87 HOH HOH . I 7 HOH C 79 1279 130 HOH HOH . I 7 HOH C 80 1280 27 HOH HOH . I 7 HOH C 81 1281 50 HOH HOH . I 7 HOH C 82 1282 7 HOH HOH . I 7 HOH C 83 1283 111 HOH HOH . I 7 HOH C 84 1284 64 HOH HOH . I 7 HOH C 85 1285 135 HOH HOH . I 7 HOH C 86 1286 74 HOH HOH . I 7 HOH C 87 1287 35 HOH HOH . I 7 HOH C 88 1288 26 HOH HOH . I 7 HOH C 89 1289 48 HOH HOH . I 7 HOH C 90 1290 112 HOH HOH . I 7 HOH C 91 1291 32 HOH HOH . I 7 HOH C 92 1292 9 HOH HOH . I 7 HOH C 93 1293 107 HOH HOH . I 7 HOH C 94 1294 69 HOH HOH . I 7 HOH C 95 1295 18 HOH HOH . I 7 HOH C 96 1296 57 HOH HOH . I 7 HOH C 97 1297 93 HOH HOH . I 7 HOH C 98 1298 73 HOH HOH . I 7 HOH C 99 1299 114 HOH HOH . I 7 HOH C 100 1300 132 HOH HOH . I 7 HOH C 101 1301 86 HOH HOH . I 7 HOH C 102 1302 113 HOH HOH . I 7 HOH C 103 1303 110 HOH HOH . I 7 HOH C 104 1304 31 HOH HOH . I 7 HOH C 105 1305 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 34.128 -23.471 60.92 0 14.97 ? C1 GOL 1101 C 1 HETATM 2 O O1 GOL . . . F 6 34.834 -22.569 61.742 0 18.21 ? O1 GOL 1101 C 1 HETATM 3 C C2 GOL . . . F 6 35.125 -24.237 60.064 0 21.4 ? C2 GOL 1101 C 1 HETATM 4 O O2 GOL . . . F 6 36.19 -23.379 59.763 0 11.95 ? O2 GOL 1101 C 1 HETATM 5 C C3 GOL . . . F 6 35.686 -25.459 60.781 0 14.97 ? C3 GOL 1101 C 1 HETATM 6 O O3 GOL . . . F 6 35.308 -26.656 60.137 0 18.21 ? O3 GOL 1101 C 1 # _model_server_stats.io_time_ms 133 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #