data_6X2V # _model_server_result.job_id ARkkbkQv8B-VBv0ttvsE6Q _model_server_result.datetime_utc '2024-12-22 01:31:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6X2V # _exptl.entry_id 6X2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X2V _cell.length_a 107.243 _cell.length_b 107.243 _cell.length_c 305.135 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 E O2G GNP . A GNP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 E O1B GNP . A GNP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6X2V _atom_sites.fract_transf_matrix[1][1] 0.009325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GNP A 1 301 301 GNP GNP . F 6 MG A 1 302 302 MG MG . G 7 GOL A 1 303 303 GOL GOL . H 7 GOL C 1 1101 1101 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 5 6.6 37.381 28.704 1 24.42 ? PG GNP 301 A 1 HETATM 2 O O1G GNP . . . E 5 6.771 36.018 28.056 1 25.95 ? O1G GNP 301 A 1 HETATM 3 O O2G GNP . . . E 5 7.966 38.093 28.784 1 26.38 ? O2G GNP 301 A 1 HETATM 4 O O3G GNP . . . E 5 6.016 37.222 30.131 1 24.3 ? O3G GNP 301 A 1 HETATM 5 N N3B GNP . . . E 5 5.541 38.315 27.778 1 22.42 ? N3B GNP 301 A 1 HETATM 6 P PB GNP . . . E 5 4.92 39.759 28.42 1 21.11 ? PB GNP 301 A 1 HETATM 7 O O1B GNP . . . E 5 6.088 40.661 28.877 1 23.04 ? O1B GNP 301 A 1 HETATM 8 O O2B GNP . . . E 5 4.019 39.465 29.594 1 20.11 ? O2B GNP 301 A 1 HETATM 9 O O3A GNP . . . E 5 4.061 40.534 27.216 1 20.69 ? O3A GNP 301 A 1 HETATM 10 P PA GNP . . . E 5 4.802 41.519 26.09 1 22.23 ? PA GNP 301 A 1 HETATM 11 O O1A GNP . . . E 5 6.112 40.905 25.672 1 24.43 ? O1A GNP 301 A 1 HETATM 12 O O2A GNP . . . E 5 5.068 42.879 26.73 1 23.04 ? O2A GNP 301 A 1 HETATM 13 O O5' GNP . . . E 5 3.81 41.684 24.737 1 22.68 ? O5' GNP 301 A 1 HETATM 14 C C5' GNP . . . E 5 2.821 40.718 24.517 1 22.28 ? C5' GNP 301 A 1 HETATM 15 C C4' GNP . . . E 5 1.914 41.153 23.381 1 23.39 ? C4' GNP 301 A 1 HETATM 16 O O4' GNP . . . E 5 0.839 41.756 23.867 1 23.07 ? O4' GNP 301 A 1 HETATM 17 C C3' GNP . . . E 5 2.631 42.176 22.486 1 26.23 ? C3' GNP 301 A 1 HETATM 18 O O3' GNP . . . E 5 2.452 41.862 21.182 1 28.31 ? O3' GNP 301 A 1 HETATM 19 C C2' GNP . . . E 5 1.955 43.535 22.807 1 25.64 ? C2' GNP 301 A 1 HETATM 20 O O2' GNP . . . E 5 1.895 44.401 21.554 1 28.38 ? O2' GNP 301 A 1 HETATM 21 C C1' GNP . . . E 5 0.748 43.224 23.202 1 24.35 ? C1' GNP 301 A 1 HETATM 22 N N9 GNP . . . E 5 0.301 44.17 24.183 1 23.86 ? N9 GNP 301 A 1 HETATM 23 C C8 GNP . . . E 5 0.887 44.599 25.33 1 22.89 ? C8 GNP 301 A 1 HETATM 24 N N7 GNP . . . E 5 0.083 45.475 25.891 1 23.26 ? N7 GNP 301 A 1 HETATM 25 C C5 GNP . . . E 5 -1.011 45.603 25.104 1 24.26 ? C5 GNP 301 A 1 HETATM 26 C C6 GNP . . . E 5 -2.14 46.371 25.218 1 25.64 ? C6 GNP 301 A 1 HETATM 27 O O6 GNP . . . E 5 -2.274 47.089 26.147 1 25.57 ? O6 GNP 301 A 1 HETATM 28 N N1 GNP . . . E 5 -3.08 46.306 24.288 1 26.77 ? N1 GNP 301 A 1 HETATM 29 C C2 GNP . . . E 5 -2.926 45.482 23.224 1 26.08 ? C2 GNP 301 A 1 HETATM 30 N N2 GNP . . . E 5 -4.059 45.453 22.174 1 27.85 ? N2 GNP 301 A 1 HETATM 31 N N3 GNP . . . E 5 -1.822 44.73 23.11 1 24.65 ? N3 GNP 301 A 1 HETATM 32 C C4 GNP . . . E 5 -0.863 44.794 24.057 1 24.07 ? C4 GNP 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #