data_6X2W # _model_server_result.job_id EipBeVcsAIoKpOvFrIBNSg _model_server_result.datetime_utc '2024-12-22 01:32:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6X2W # _exptl.entry_id 6X2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X2W _cell.length_a 106.586 _cell.length_b 106.586 _cell.length_c 302.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 E O2G GNP . A GNP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 E O1B GNP . A GNP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6X2W _atom_sites.fract_transf_matrix[1][1] 0.009382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GNP A 1 301 301 GNP GNP . F 6 MG A 1 302 302 MG MG . G 7 GOL A 1 303 303 GOL GOL . H 7 GOL C 1 1101 1101 GOL GOL . I 7 GOL C 1 1102 1102 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 5 59.973 -16.064 28.657 1 56.15 ? PG GNP 301 A 1 HETATM 2 O O1G GNP . . . E 5 60.579 -17.17 27.81 1 56.52 ? O1G GNP 301 A 1 HETATM 3 O O2G GNP . . . E 5 61.097 -15.168 29.218 1 54.75 ? O2G GNP 301 A 1 HETATM 4 O O3G GNP . . . E 5 59.179 -16.683 29.835 1 56.52 ? O3G GNP 301 A 1 HETATM 5 N N3B GNP . . . E 5 58.945 -15.127 27.696 1 56.24 ? N3B GNP 301 A 1 HETATM 6 P PB GNP . . . E 5 58.422 -13.606 28.246 1 56.65 ? PB GNP 301 A 1 HETATM 7 O O1B GNP . . . E 5 59.652 -12.738 28.588 1 53.65 ? O1B GNP 301 A 1 HETATM 8 O O2B GNP . . . E 5 57.563 -13.763 29.476 1 57.06 ? O2B GNP 301 A 1 HETATM 9 O O3A GNP . . . E 5 57.544 -12.865 27.03 1 59.7 ? O3A GNP 301 A 1 HETATM 10 P PA GNP . . . E 5 58.237 -11.929 25.832 1 63.32 ? PA GNP 301 A 1 HETATM 11 O O1A GNP . . . E 5 59.605 -12.466 25.501 1 63.74 ? O1A GNP 301 A 1 HETATM 12 O O2A GNP . . . E 5 58.362 -10.485 26.318 1 63.74 ? O2A GNP 301 A 1 HETATM 13 O O5' GNP . . . E 5 57.268 -11.987 24.454 1 66.22 ? O5' GNP 301 A 1 HETATM 14 C C5' GNP . . . E 5 56.169 -12.856 24.448 1 68.97 ? C5' GNP 301 A 1 HETATM 15 C C4' GNP . . . E 5 55.269 -12.549 23.266 1 71.41 ? C4' GNP 301 A 1 HETATM 16 O O4' GNP . . . E 5 54.162 -11.945 23.678 1 72.54 ? O4' GNP 301 A 1 HETATM 17 C C3' GNP . . . E 5 55.962 -11.576 22.3 1 72.47 ? C3' GNP 301 A 1 HETATM 18 O O3' GNP . . . E 5 55.713 -11.935 21.02 1 72.66 ? O3' GNP 301 A 1 HETATM 19 C C2' GNP . . . E 5 55.316 -10.2 22.607 1 73.15 ? C2' GNP 301 A 1 HETATM 20 O O2' GNP . . . E 5 55.304 -9.334 21.353 1 73.32 ? O2' GNP 301 A 1 HETATM 21 C C1' GNP . . . E 5 54.095 -10.493 22.972 1 73.47 ? C1' GNP 301 A 1 HETATM 22 N N9 GNP . . . E 5 53.616 -9.521 23.912 1 74.57 ? N9 GNP 301 A 1 HETATM 23 C C8 GNP . . . E 5 54.161 -9.062 25.068 1 74.79 ? C8 GNP 301 A 1 HETATM 24 N N7 GNP . . . E 5 53.337 -8.172 25.577 1 74.79 ? N7 GNP 301 A 1 HETATM 25 C C5 GNP . . . E 5 52.272 -8.066 24.748 1 74.84 ? C5 GNP 301 A 1 HETATM 26 C C6 GNP . . . E 5 51.14 -7.296 24.8 1 75.13 ? C6 GNP 301 A 1 HETATM 27 O O6 GNP . . . E 5 50.972 -6.553 25.704 1 75.23 ? O6 GNP 301 A 1 HETATM 28 N N1 GNP . . . E 5 50.234 -7.386 23.839 1 75.23 ? N1 GNP 301 A 1 HETATM 29 C C2 GNP . . . E 5 50.426 -8.239 22.803 1 75.25 ? C2 GNP 301 A 1 HETATM 30 N N2 GNP . . . E 5 49.332 -8.297 21.715 1 75.33 ? N2 GNP 301 A 1 HETATM 31 N N3 GNP . . . E 5 51.533 -8.992 22.749 1 75.09 ? N3 GNP 301 A 1 HETATM 32 C C4 GNP . . . E 5 52.458 -8.902 23.728 1 74.84 ? C4 GNP 301 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #