data_6X3A # _model_server_result.job_id D0nyqJ2nLAsn7kVWHJkG3Q _model_server_result.datetime_utc '2024-11-24 00:42:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6X3A # _exptl.entry_id 6X3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.334 _cell.angle_gamma 90 _cell.entry_id 6X3A _cell.length_a 95.06 _cell.length_b 34.57 _cell.length_c 109.199 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6X3A _atom_sites.fract_transf_matrix[1][1] 0.01052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1001 1001 GOL GOL . C 3 HOH A 1 1101 158 HOH HOH . C 3 HOH A 2 1102 200 HOH HOH . C 3 HOH A 3 1103 27 HOH HOH . C 3 HOH A 4 1104 99 HOH HOH . C 3 HOH A 5 1105 273 HOH HOH . C 3 HOH A 6 1106 150 HOH HOH . C 3 HOH A 7 1107 223 HOH HOH . C 3 HOH A 8 1108 102 HOH HOH . C 3 HOH A 9 1109 115 HOH HOH . C 3 HOH A 10 1110 106 HOH HOH . C 3 HOH A 11 1111 257 HOH HOH . C 3 HOH A 12 1112 203 HOH HOH . C 3 HOH A 13 1113 74 HOH HOH . C 3 HOH A 14 1114 217 HOH HOH . C 3 HOH A 15 1115 119 HOH HOH . C 3 HOH A 16 1116 311 HOH HOH . C 3 HOH A 17 1117 72 HOH HOH . C 3 HOH A 18 1118 14 HOH HOH . C 3 HOH A 19 1119 255 HOH HOH . C 3 HOH A 20 1120 219 HOH HOH . C 3 HOH A 21 1121 232 HOH HOH . C 3 HOH A 22 1122 60 HOH HOH . C 3 HOH A 23 1123 230 HOH HOH . C 3 HOH A 24 1124 128 HOH HOH . C 3 HOH A 25 1125 86 HOH HOH . C 3 HOH A 26 1126 80 HOH HOH . C 3 HOH A 27 1127 153 HOH HOH . C 3 HOH A 28 1128 18 HOH HOH . C 3 HOH A 29 1129 177 HOH HOH . C 3 HOH A 30 1130 77 HOH HOH . C 3 HOH A 31 1131 71 HOH HOH . C 3 HOH A 32 1132 54 HOH HOH . C 3 HOH A 33 1133 31 HOH HOH . C 3 HOH A 34 1134 110 HOH HOH . C 3 HOH A 35 1135 197 HOH HOH . C 3 HOH A 36 1136 148 HOH HOH . C 3 HOH A 37 1137 123 HOH HOH . C 3 HOH A 38 1138 295 HOH HOH . C 3 HOH A 39 1139 16 HOH HOH . C 3 HOH A 40 1140 67 HOH HOH . C 3 HOH A 41 1141 62 HOH HOH . C 3 HOH A 42 1142 133 HOH HOH . C 3 HOH A 43 1143 259 HOH HOH . C 3 HOH A 44 1144 4 HOH HOH . C 3 HOH A 45 1145 20 HOH HOH . C 3 HOH A 46 1146 181 HOH HOH . C 3 HOH A 47 1147 70 HOH HOH . C 3 HOH A 48 1148 83 HOH HOH . C 3 HOH A 49 1149 289 HOH HOH . C 3 HOH A 50 1150 97 HOH HOH . C 3 HOH A 51 1151 226 HOH HOH . C 3 HOH A 52 1152 198 HOH HOH . C 3 HOH A 53 1153 247 HOH HOH . C 3 HOH A 54 1154 299 HOH HOH . C 3 HOH A 55 1155 26 HOH HOH . C 3 HOH A 56 1156 24 HOH HOH . C 3 HOH A 57 1157 146 HOH HOH . C 3 HOH A 58 1158 167 HOH HOH . C 3 HOH A 59 1159 88 HOH HOH . C 3 HOH A 60 1160 113 HOH HOH . C 3 HOH A 61 1161 81 HOH HOH . C 3 HOH A 62 1162 76 HOH HOH . C 3 HOH A 63 1163 144 HOH HOH . C 3 HOH A 64 1164 301 HOH HOH . C 3 HOH A 65 1165 263 HOH HOH . C 3 HOH A 66 1166 59 HOH HOH . C 3 HOH A 67 1167 33 HOH HOH . C 3 HOH A 68 1168 243 HOH HOH . C 3 HOH A 69 1169 151 HOH HOH . C 3 HOH A 70 1170 137 HOH HOH . C 3 HOH A 71 1171 275 HOH HOH . C 3 HOH A 72 1172 240 HOH HOH . C 3 HOH A 73 1173 87 HOH HOH . C 3 HOH A 74 1174 78 HOH HOH . C 3 HOH A 75 1175 304 HOH HOH . C 3 HOH A 76 1176 10 HOH HOH . C 3 HOH A 77 1177 36 HOH HOH . C 3 HOH A 78 1178 112 HOH HOH . C 3 HOH A 79 1179 73 HOH HOH . C 3 HOH A 80 1180 43 HOH HOH . C 3 HOH A 81 1181 120 HOH HOH . C 3 HOH A 82 1182 241 HOH HOH . C 3 HOH A 83 1183 90 HOH HOH . C 3 HOH A 84 1184 51 HOH HOH . C 3 HOH A 85 1185 21 HOH HOH . C 3 HOH A 86 1186 15 HOH HOH . C 3 HOH A 87 1187 58 HOH HOH . C 3 HOH A 88 1188 312 HOH HOH . C 3 HOH A 89 1189 40 HOH HOH . C 3 HOH A 90 1190 190 HOH HOH . C 3 HOH A 91 1191 244 HOH HOH . C 3 HOH A 92 1192 75 HOH HOH . C 3 HOH A 93 1193 12 HOH HOH . C 3 HOH A 94 1194 246 HOH HOH . C 3 HOH A 95 1195 17 HOH HOH . C 3 HOH A 96 1196 125 HOH HOH . C 3 HOH A 97 1197 156 HOH HOH . C 3 HOH A 98 1198 105 HOH HOH . C 3 HOH A 99 1199 159 HOH HOH . C 3 HOH A 100 1200 260 HOH HOH . C 3 HOH A 101 1201 98 HOH HOH . C 3 HOH A 102 1202 279 HOH HOH . C 3 HOH A 103 1203 45 HOH HOH . C 3 HOH A 104 1204 173 HOH HOH . C 3 HOH A 105 1205 116 HOH HOH . C 3 HOH A 106 1206 79 HOH HOH . C 3 HOH A 107 1207 7 HOH HOH . C 3 HOH A 108 1208 235 HOH HOH . C 3 HOH A 109 1209 288 HOH HOH . C 3 HOH A 110 1210 293 HOH HOH . C 3 HOH A 111 1211 29 HOH HOH . C 3 HOH A 112 1212 227 HOH HOH . C 3 HOH A 113 1213 178 HOH HOH . C 3 HOH A 114 1214 140 HOH HOH . C 3 HOH A 115 1215 39 HOH HOH . C 3 HOH A 116 1216 157 HOH HOH . C 3 HOH A 117 1217 38 HOH HOH . C 3 HOH A 118 1218 92 HOH HOH . C 3 HOH A 119 1219 118 HOH HOH . C 3 HOH A 120 1220 32 HOH HOH . C 3 HOH A 121 1221 85 HOH HOH . C 3 HOH A 122 1222 270 HOH HOH . C 3 HOH A 123 1223 1 HOH HOH . C 3 HOH A 124 1224 245 HOH HOH . C 3 HOH A 125 1225 53 HOH HOH . C 3 HOH A 126 1226 82 HOH HOH . C 3 HOH A 127 1227 229 HOH HOH . C 3 HOH A 128 1228 93 HOH HOH . C 3 HOH A 129 1229 265 HOH HOH . C 3 HOH A 130 1230 152 HOH HOH . C 3 HOH A 131 1231 292 HOH HOH . C 3 HOH A 132 1232 192 HOH HOH . C 3 HOH A 133 1233 117 HOH HOH . C 3 HOH A 134 1234 176 HOH HOH . C 3 HOH A 135 1235 182 HOH HOH . C 3 HOH A 136 1236 306 HOH HOH . C 3 HOH A 137 1237 174 HOH HOH . C 3 HOH A 138 1238 89 HOH HOH . C 3 HOH A 139 1239 3 HOH HOH . C 3 HOH A 140 1240 251 HOH HOH . C 3 HOH A 141 1241 5 HOH HOH . C 3 HOH A 142 1242 47 HOH HOH . C 3 HOH A 143 1243 222 HOH HOH . C 3 HOH A 144 1244 205 HOH HOH . C 3 HOH A 145 1245 272 HOH HOH . C 3 HOH A 146 1246 37 HOH HOH . C 3 HOH A 147 1247 34 HOH HOH . C 3 HOH A 148 1248 185 HOH HOH . C 3 HOH A 149 1249 236 HOH HOH . C 3 HOH A 150 1250 250 HOH HOH . C 3 HOH A 151 1251 211 HOH HOH . C 3 HOH A 152 1252 2 HOH HOH . C 3 HOH A 153 1253 65 HOH HOH . C 3 HOH A 154 1254 171 HOH HOH . C 3 HOH A 155 1255 22 HOH HOH . C 3 HOH A 156 1256 300 HOH HOH . C 3 HOH A 157 1257 6 HOH HOH . C 3 HOH A 158 1258 48 HOH HOH . C 3 HOH A 159 1259 266 HOH HOH . C 3 HOH A 160 1260 91 HOH HOH . C 3 HOH A 161 1261 186 HOH HOH . C 3 HOH A 162 1262 49 HOH HOH . C 3 HOH A 163 1263 234 HOH HOH . C 3 HOH A 164 1264 122 HOH HOH . C 3 HOH A 165 1265 213 HOH HOH . C 3 HOH A 166 1266 84 HOH HOH . C 3 HOH A 167 1267 64 HOH HOH . C 3 HOH A 168 1268 127 HOH HOH . C 3 HOH A 169 1269 121 HOH HOH . C 3 HOH A 170 1270 201 HOH HOH . C 3 HOH A 171 1271 191 HOH HOH . C 3 HOH A 172 1272 132 HOH HOH . C 3 HOH A 173 1273 109 HOH HOH . C 3 HOH A 174 1274 25 HOH HOH . C 3 HOH A 175 1275 42 HOH HOH . C 3 HOH A 176 1276 286 HOH HOH . C 3 HOH A 177 1277 28 HOH HOH . C 3 HOH A 178 1278 180 HOH HOH . C 3 HOH A 179 1279 96 HOH HOH . C 3 HOH A 180 1280 278 HOH HOH . C 3 HOH A 181 1281 290 HOH HOH . C 3 HOH A 182 1282 138 HOH HOH . C 3 HOH A 183 1283 8 HOH HOH . C 3 HOH A 184 1284 280 HOH HOH . C 3 HOH A 185 1285 135 HOH HOH . C 3 HOH A 186 1286 164 HOH HOH . C 3 HOH A 187 1287 258 HOH HOH . C 3 HOH A 188 1288 220 HOH HOH . C 3 HOH A 189 1289 41 HOH HOH . C 3 HOH A 190 1290 154 HOH HOH . C 3 HOH A 191 1291 221 HOH HOH . C 3 HOH A 192 1292 46 HOH HOH . C 3 HOH A 193 1293 281 HOH HOH . C 3 HOH A 194 1294 63 HOH HOH . C 3 HOH A 195 1295 145 HOH HOH . C 3 HOH A 196 1296 9 HOH HOH . C 3 HOH A 197 1297 184 HOH HOH . C 3 HOH A 198 1298 95 HOH HOH . C 3 HOH A 199 1299 215 HOH HOH . C 3 HOH A 200 1300 126 HOH HOH . C 3 HOH A 201 1301 108 HOH HOH . C 3 HOH A 202 1302 149 HOH HOH . C 3 HOH A 203 1303 131 HOH HOH . C 3 HOH A 204 1304 103 HOH HOH . C 3 HOH A 205 1305 170 HOH HOH . C 3 HOH A 206 1306 268 HOH HOH . C 3 HOH A 207 1307 165 HOH HOH . C 3 HOH A 208 1308 225 HOH HOH . C 3 HOH A 209 1309 13 HOH HOH . C 3 HOH A 210 1310 271 HOH HOH . C 3 HOH A 211 1311 11 HOH HOH . C 3 HOH A 212 1312 66 HOH HOH . C 3 HOH A 213 1313 199 HOH HOH . C 3 HOH A 214 1314 254 HOH HOH . C 3 HOH A 215 1315 283 HOH HOH . C 3 HOH A 216 1316 111 HOH HOH . C 3 HOH A 217 1317 202 HOH HOH . C 3 HOH A 218 1318 166 HOH HOH . C 3 HOH A 219 1319 104 HOH HOH . C 3 HOH A 220 1320 233 HOH HOH . C 3 HOH A 221 1321 296 HOH HOH . C 3 HOH A 222 1322 276 HOH HOH . C 3 HOH A 223 1323 187 HOH HOH . C 3 HOH A 224 1324 239 HOH HOH . C 3 HOH A 225 1325 136 HOH HOH . C 3 HOH A 226 1326 310 HOH HOH . C 3 HOH A 227 1327 189 HOH HOH . C 3 HOH A 228 1328 55 HOH HOH . C 3 HOH A 229 1329 194 HOH HOH . C 3 HOH A 230 1330 267 HOH HOH . C 3 HOH A 231 1331 147 HOH HOH . C 3 HOH A 232 1332 129 HOH HOH . C 3 HOH A 233 1333 208 HOH HOH . C 3 HOH A 234 1334 56 HOH HOH . C 3 HOH A 235 1335 19 HOH HOH . C 3 HOH A 236 1336 44 HOH HOH . C 3 HOH A 237 1337 303 HOH HOH . C 3 HOH A 238 1338 134 HOH HOH . C 3 HOH A 239 1339 195 HOH HOH . C 3 HOH A 240 1340 124 HOH HOH . C 3 HOH A 241 1341 238 HOH HOH . C 3 HOH A 242 1342 216 HOH HOH . C 3 HOH A 243 1343 282 HOH HOH . C 3 HOH A 244 1344 210 HOH HOH . C 3 HOH A 245 1345 256 HOH HOH . C 3 HOH A 246 1346 155 HOH HOH . C 3 HOH A 247 1347 264 HOH HOH . C 3 HOH A 248 1348 207 HOH HOH . C 3 HOH A 249 1349 287 HOH HOH . C 3 HOH A 250 1350 23 HOH HOH . C 3 HOH A 251 1351 94 HOH HOH . C 3 HOH A 252 1352 61 HOH HOH . C 3 HOH A 253 1353 52 HOH HOH . C 3 HOH A 254 1354 175 HOH HOH . C 3 HOH A 255 1355 308 HOH HOH . C 3 HOH A 256 1356 307 HOH HOH . C 3 HOH A 257 1357 179 HOH HOH . C 3 HOH A 258 1358 57 HOH HOH . C 3 HOH A 259 1359 224 HOH HOH . C 3 HOH A 260 1360 249 HOH HOH . C 3 HOH A 261 1361 305 HOH HOH . C 3 HOH A 262 1362 309 HOH HOH . C 3 HOH A 263 1363 142 HOH HOH . C 3 HOH A 264 1364 252 HOH HOH . C 3 HOH A 265 1365 143 HOH HOH . C 3 HOH A 266 1366 231 HOH HOH . C 3 HOH A 267 1367 285 HOH HOH . C 3 HOH A 268 1368 218 HOH HOH . C 3 HOH A 269 1369 294 HOH HOH . C 3 HOH A 270 1370 274 HOH HOH . C 3 HOH A 271 1371 188 HOH HOH . C 3 HOH A 272 1372 269 HOH HOH . C 3 HOH A 273 1373 298 HOH HOH . C 3 HOH A 274 1374 168 HOH HOH . C 3 HOH A 275 1375 35 HOH HOH . C 3 HOH A 276 1376 261 HOH HOH . C 3 HOH A 277 1377 277 HOH HOH . C 3 HOH A 278 1378 169 HOH HOH . C 3 HOH A 279 1379 163 HOH HOH . C 3 HOH A 280 1380 30 HOH HOH . C 3 HOH A 281 1381 212 HOH HOH . C 3 HOH A 282 1382 206 HOH HOH . C 3 HOH A 283 1383 101 HOH HOH . C 3 HOH A 284 1384 291 HOH HOH . C 3 HOH A 285 1385 160 HOH HOH . C 3 HOH A 286 1386 297 HOH HOH . C 3 HOH A 287 1387 253 HOH HOH . C 3 HOH A 288 1388 69 HOH HOH . C 3 HOH A 289 1389 228 HOH HOH . C 3 HOH A 290 1390 139 HOH HOH . C 3 HOH A 291 1391 141 HOH HOH . C 3 HOH A 292 1392 204 HOH HOH . C 3 HOH A 293 1393 50 HOH HOH . C 3 HOH A 294 1394 161 HOH HOH . C 3 HOH A 295 1395 162 HOH HOH . C 3 HOH A 296 1396 209 HOH HOH . C 3 HOH A 297 1397 242 HOH HOH . C 3 HOH A 298 1398 107 HOH HOH . C 3 HOH A 299 1399 114 HOH HOH . C 3 HOH A 300 1400 196 HOH HOH . C 3 HOH A 301 1401 68 HOH HOH . C 3 HOH A 302 1402 302 HOH HOH . C 3 HOH A 303 1403 130 HOH HOH . C 3 HOH A 304 1404 248 HOH HOH . C 3 HOH A 305 1405 262 HOH HOH . C 3 HOH A 306 1406 214 HOH HOH . C 3 HOH A 307 1407 237 HOH HOH . C 3 HOH A 308 1408 100 HOH HOH . C 3 HOH A 309 1409 172 HOH HOH . C 3 HOH A 310 1410 284 HOH HOH . C 3 HOH A 311 1411 193 HOH HOH . C 3 HOH A 312 1412 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 76.322 36.389 73.666 1 60.59 ? C1 GOL 1001 A 1 HETATM 2 O O1 GOL . . . B 2 75.59 36.406 72.485 1 73.86 ? O1 GOL 1001 A 1 HETATM 3 C C2 GOL . . . B 2 75.621 35.41 74.648 1 68.5 ? C2 GOL 1001 A 1 HETATM 4 O O2 GOL . . . B 2 75.727 35.835 75.962 1 76.9 ? O2 GOL 1001 A 1 HETATM 5 C C3 GOL . . . B 2 74.154 35.348 74.183 1 69.4 ? C3 GOL 1001 A 1 HETATM 6 O O3 GOL . . . B 2 73.487 34.549 75.101 1 71.91 ? O3 GOL 1001 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #