data_6X3C # _model_server_result.job_id VRWo09KwBilqXXpbn4Qjmg _model_server_result.datetime_utc '2024-10-19 02:21:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 6X3C # _exptl.entry_id 6X3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIOACETIC ACID S-{2-[3-(2-HYDROXY-3,3-DIMETHYL-4-PHOSPHONOOXY-BUTYRYLAMINO)-PROPIONYLAMINO]-ETHYL} ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X3C _cell.length_a 105.54 _cell.length_b 105.62 _cell.length_c 178.2 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,WA,XA 1 1 B,C,D,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,TA,UA,VA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 L N N ? 2 N N N ? 2 T N N ? 2 EA N N ? 2 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 158 A ASN 164 1_555 GA MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 B O ASN 158 B ASN 164 1_555 O MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc3 O MG MG . B MG 304 1_555 C O ASN 158 C ASN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc4 O MG MG . B MG 304 1_555 D O ASN 158 D ASN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc5 E O ASN 158 E ASN 164 1_555 GA MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 GA MG MG . E MG 303 1_555 F O ASN 158 F ASN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'C13 H25 N2 O8 P S' _chem_comp.formula_weight 400.385 _chem_comp.id SXA _chem_comp.mon_nstd_flag . _chem_comp.name 'THIOACETIC ACID S-{2-[3-(2-HYDROXY-3,3-DIMETHYL-4-PHOSPHONOOXY-BUTYRYLAMINO)-PROPIONYLAMINO]-ETHYL} ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P24 O26 SXA sing 380 n n P24 O23 SXA doub 381 n n P24 O27 SXA sing 382 n n O27 C28 SXA sing 383 n n C28 C29 SXA sing 384 n n C28 H28 SXA sing 385 n n C28 H28A SXA sing 386 n n C29 C30 SXA sing 387 n n C29 C31 SXA sing 388 n n C29 C32 SXA sing 389 n n C30 H30 SXA sing 390 n n C30 H30A SXA sing 391 n n C30 H30B SXA sing 392 n n C31 H31 SXA sing 393 n n C31 H31A SXA sing 394 n n C31 H31B SXA sing 395 n n C32 O33 SXA sing 396 n n C32 C34 SXA sing 397 n n C32 H32 SXA sing 398 n n O33 HO33 SXA sing 399 n n C34 O35 SXA doub 400 n n C34 N36 SXA sing 401 n n N36 C37 SXA sing 402 n n N36 HN36 SXA sing 403 n n C37 C38 SXA sing 404 n n C37 H37 SXA sing 405 n n C37 H37A SXA sing 406 n n C38 C39 SXA sing 407 n n C38 H38 SXA sing 408 n n C38 H38A SXA sing 409 n n C39 O40 SXA doub 410 n n C39 N41 SXA sing 411 n n N41 C42 SXA sing 412 n n N41 HN41 SXA sing 413 n n C42 C43 SXA sing 414 n n C42 H42 SXA sing 415 n n C42 H42A SXA sing 416 n n C43 S1 SXA sing 417 n n C43 H43 SXA sing 418 n n C43 H43A SXA sing 419 n n S1 C1 SXA sing 420 n n C1 O1 SXA doub 421 n n C1 C2 SXA sing 422 n n C2 H2 SXA sing 423 n n C2 H2A SXA sing 424 n n C2 H2B SXA sing 425 n n P24 O8 SXA sing 426 n n O26 H24 SXA sing 427 n n O8 H25 SXA sing 428 n n # _atom_sites.entry_id 6X3C _atom_sites.fract_transf_matrix[1][1] 0.009475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SXA A 1 301 301 SXA ACO . H 3 O7S A 1 302 401 O7S LIG . I 4 PO4 A 1 303 4 PO4 PO4 . J 5 SO4 A 1 304 2 SO4 SO4 . K 6 CL A 1 305 4 CL CL . L 2 SXA B 1 301 301 SXA ACO . M 3 O7S B 1 302 401 O7S LIG . N 2 SXA B 1 303 301 SXA ACO . O 7 MG B 1 304 3 MG MG . P 4 PO4 B 1 305 25 PO4 PO4 . Q 4 PO4 B 1 306 26 PO4 PO4 . R 5 SO4 B 1 307 3 SO4 SO4 . S 5 SO4 B 1 308 4 SO4 SO4 . T 2 SXA C 1 301 301 SXA ACO . U 3 O7S C 1 302 401 O7S LIG . V 4 PO4 C 1 303 9 PO4 PO4 . W 4 PO4 C 1 304 23 PO4 PO4 . X 4 PO4 C 1 305 24 PO4 PO4 . Y 6 CL C 1 306 3 CL CL . Z 3 O7S D 1 401 401 O7S LIG . AA 4 PO4 D 1 402 17 PO4 PO4 . BA 4 PO4 D 1 403 20 PO4 PO4 . CA 5 SO4 D 1 404 1 SO4 SO4 . DA 6 CL D 1 405 2 CL CL . EA 2 SXA E 1 301 301 SXA ACO . FA 3 O7S E 1 302 401 O7S LIG . GA 7 MG E 1 303 4 MG MG . HA 4 PO4 E 1 304 11 PO4 PO4 . IA 4 PO4 E 1 305 18 PO4 PO4 . JA 4 PO4 E 1 306 22 PO4 PO4 . KA 4 PO4 E 1 307 27 PO4 PO4 . LA 6 CL E 1 308 6 CL CL . MA 2 SXA F 1 301 301 SXA ACO . NA 3 O7S F 1 302 401 O7S LIG . OA 4 PO4 F 1 303 12 PO4 PO4 . PA 4 PO4 F 1 304 21 PO4 PO4 . QA 6 CL F 1 305 1 CL CL . RA 6 CL F 1 306 5 CL CL . SA 8 HOH A 1 401 29 HOH HOH . SA 8 HOH A 2 402 12 HOH HOH . SA 8 HOH A 3 403 4 HOH HOH . SA 8 HOH A 4 404 34 HOH HOH . SA 8 HOH A 5 405 21 HOH HOH . SA 8 HOH A 6 406 17 HOH HOH . SA 8 HOH A 7 407 14 HOH HOH . TA 8 HOH B 1 401 2 HOH HOH . TA 8 HOH B 2 402 45 HOH HOH . TA 8 HOH B 3 403 22 HOH HOH . TA 8 HOH B 4 404 27 HOH HOH . TA 8 HOH B 5 405 10 HOH HOH . TA 8 HOH B 6 406 7 HOH HOH . TA 8 HOH B 7 407 44 HOH HOH . TA 8 HOH B 8 408 47 HOH HOH . TA 8 HOH B 9 409 32 HOH HOH . TA 8 HOH B 10 410 40 HOH HOH . TA 8 HOH B 11 411 38 HOH HOH . TA 8 HOH B 12 412 16 HOH HOH . TA 8 HOH B 13 413 41 HOH HOH . TA 8 HOH B 14 414 20 HOH HOH . UA 8 HOH C 1 401 36 HOH HOH . UA 8 HOH C 2 402 42 HOH HOH . UA 8 HOH C 3 403 39 HOH HOH . UA 8 HOH C 4 404 31 HOH HOH . UA 8 HOH C 5 405 43 HOH HOH . UA 8 HOH C 6 406 11 HOH HOH . UA 8 HOH C 7 407 23 HOH HOH . UA 8 HOH C 8 408 9 HOH HOH . VA 8 HOH D 1 501 24 HOH HOH . VA 8 HOH D 2 502 6 HOH HOH . VA 8 HOH D 3 503 33 HOH HOH . VA 8 HOH D 4 504 8 HOH HOH . VA 8 HOH D 5 505 19 HOH HOH . VA 8 HOH D 6 506 25 HOH HOH . WA 8 HOH E 1 401 3 HOH HOH . WA 8 HOH E 2 402 1 HOH HOH . WA 8 HOH E 3 403 35 HOH HOH . XA 8 HOH F 1 401 5 HOH HOH . XA 8 HOH F 2 402 26 HOH HOH . XA 8 HOH F 3 403 30 HOH HOH . XA 8 HOH F 4 404 28 HOH HOH . XA 8 HOH F 5 405 37 HOH HOH . XA 8 HOH F 6 406 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 SXA . . . L 2 1.426 48.47 3.764 1 38.11 ? C28 SXA 301 B 1 HETATM 2 C C29 SXA . . . L 2 1.763 49.424 2.577 1 128.8 ? C29 SXA 301 B 1 HETATM 3 C C30 SXA . . . L 2 1.899 48.568 1.289 1 23.31 ? C30 SXA 301 B 1 HETATM 4 C C31 SXA . . . L 2 3.162 50.033 2.857 1 176.57 ? C31 SXA 301 B 1 HETATM 5 C C32 SXA . . . L 2 0.634 50.531 2.434 1 225.04 ? C32 SXA 301 B 1 HETATM 6 O O33 SXA . . . L 2 0.951 51.685 3.222 1 260.32 ? O33 SXA 301 B 1 HETATM 7 C C34 SXA . . . L 2 0.268 50.979 0.98 1 143.07 ? C34 SXA 301 B 1 HETATM 8 O O35 SXA . . . L 2 0.913 51.851 0.394 1 40.35 ? O35 SXA 301 B 1 HETATM 9 N N36 SXA . . . L 2 -0.775 50.345 0.407 1 156.23 ? N36 SXA 301 B 1 HETATM 10 C C37 SXA . . . L 2 -1.38 50.617 -0.9 1 118.67 ? C37 SXA 301 B 1 HETATM 11 C C38 SXA . . . L 2 -2.264 49.477 -1.484 1 47.02 ? C38 SXA 301 B 1 HETATM 12 C C39 SXA . . . L 2 -2.361 49.394 -3.009 1 65.88 ? C39 SXA 301 B 1 HETATM 13 O O40 SXA . . . L 2 -1.988 50.346 -3.69 1 125.93 ? O40 SXA 301 B 1 HETATM 14 N N41 SXA . . . L 2 -2.926 48.306 -3.557 1 101.76 ? N41 SXA 301 B 1 HETATM 15 C C42 SXA . . . L 2 -3.274 48.251 -4.983 1 78.09 ? C42 SXA 301 B 1 HETATM 16 C C43 SXA . . . L 2 -3.874 46.935 -5.516 1 69.25 ? C43 SXA 301 B 1 HETATM 17 S S1 SXA . . . L 2 -2.711 45.533 -5.63 1 39.69 ? S1 SXA 301 B 1 HETATM 18 C C1 SXA . . . L 2 -2.881 45.191 -7.418 1 119.14 ? C1 SXA 301 B 1 HETATM 19 O O1 SXA . . . L 2 -3.951 45.223 -8.021 1 76.02 ? O1 SXA 301 B 1 HETATM 20 C C2 SXA . . . L 2 -1.563 45.04 -8.162 1 80.74 ? C2 SXA 301 B 1 HETATM 21 H H28 SXA . . . L 2 2.167 47.677 3.884 1 45.28 ? H28 SXA 301 B 1 HETATM 22 H H28A SXA . . . L 2 1.379 49.005 4.715 1 45.28 ? H28A SXA 301 B 1 HETATM 23 H H30 SXA . . . L 2 2.572 47.728 1.42 1 27.52 ? H30 SXA 301 B 1 HETATM 24 H H30A SXA . . . L 2 0.938 48.163 0.963 1 27.52 ? H30A SXA 301 B 1 HETATM 25 H H30B SXA . . . L 2 2.297 49.16 0.459 1 27.52 ? H30B SXA 301 B 1 HETATM 26 H H31 SXA . . . L 2 3.949 49.28 2.865 1 211.42 ? H31 SXA 301 B 1 HETATM 27 H H31A SXA . . . L 2 3.423 50.774 2.099 1 211.42 ? H31A SXA 301 B 1 HETATM 28 H H31B SXA . . . L 2 3.209 50.539 3.825 1 211.42 ? H31B SXA 301 B 1 HETATM 29 H H32 SXA . . . L 2 -0.29 50.138 2.867 1 269.59 ? H32 SXA 301 B 1 HETATM 30 H HO33 SXA . . . L 2 1.413 51.384 4.01 1 311.93 ? HO33 SXA 301 B 1 HETATM 31 H HN36 SXA . . . L 2 -1.275 49.683 0.976 1 187.02 ? HN36 SXA 301 B 1 HETATM 32 H H37 SXA . . . L 2 -1.686 51.629 -1.176 1 141.95 ? H37 SXA 301 B 1 HETATM 33 H H37A SXA . . . L 2 -0.498 50.59 -1.548 1 141.95 ? H37A SXA 301 B 1 HETATM 34 H H38 SXA . . . L 2 -1.896 48.532 -1.094 1 55.97 ? H38 SXA 301 B 1 HETATM 35 H H38A SXA . . . L 2 -3.235 49.474 -0.992 1 55.97 ? H38A SXA 301 B 1 HETATM 36 H HN41 SXA . . . L 2 -3.155 47.51 -2.982 1 121.66 ? HN41 SXA 301 B 1 HETATM 37 H H42 SXA . . . L 2 -3.916 49.092 -5.261 1 93.25 ? H42 SXA 301 B 1 HETATM 38 H H42A SXA . . . L 2 -2.37 48.424 -5.561 1 93.25 ? H42A SXA 301 B 1 HETATM 39 H H43 SXA . . . L 2 -4.503 47.12 -6.393 1 82.64 ? H43 SXA 301 B 1 HETATM 40 H H43A SXA . . . L 2 -4.61 46.617 -4.78 1 82.64 ? H43A SXA 301 B 1 HETATM 41 H H2 SXA . . . L 2 -0.977 45.953 -8.07 1 96.43 ? H2 SXA 301 B 1 HETATM 42 H H2A SXA . . . L 2 -0.973 44.214 -7.77 1 96.43 ? H2A SXA 301 B 1 HETATM 43 H H2B SXA . . . L 2 -1.744 44.867 -9.223 1 96.43 ? H2B SXA 301 B 1 HETATM 44 H H15 SXA . . . L 2 0.458 47.985 3.63 1 45.28 ? H15 SXA 301 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #