data_6X3D # _model_server_result.job_id KfI3SGtZG4Hh7P3bCgkRzw _model_server_result.datetime_utc '2024-11-27 05:59:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6X3D # _exptl.entry_id 6X3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 327.222 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6R,7S)-4-[(3,3-difluorocyclobutyl)oxy]-6-fluoro-1-(trifluoromethyl)-6,7-dihydro-5H-cyclopenta[c]pyridin-7-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.21 _cell.angle_gamma 90 _cell.entry_id 6X3D _cell.length_a 73.253 _cell.length_b 84.006 _cell.length_c 41.344 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_544 -x+1/2,y-1/2,-z-1 -1 0 0 0 1 0 0 0 -1 48.168037 -42.003 -39.700368 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 F6 N O2' _chem_comp.formula_weight 327.222 _chem_comp.id ULM _chem_comp.mon_nstd_flag . _chem_comp.name (6R,7S)-4-[(3,3-difluorocyclobutyl)oxy]-6-fluoro-1-(trifluoromethyl)-6,7-dihydro-5H-cyclopenta[c]pyridin-7-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C5 ULM sing 358 n n C5 C9 ULM sing 359 n n C5 C6 ULM sing 360 n n C9 C8 ULM sing 361 n n F16 C14 ULM sing 362 n n C6 O2 ULM sing 363 n n C6 C7 ULM sing 364 n n C8 C7 ULM doub 365 n y C8 C2 ULM sing 366 n y C13 C14 ULM sing 367 n n C13 C10 ULM sing 368 n n O1 C2 ULM sing 369 n n O1 C10 ULM sing 370 n n C14 C12 ULM sing 371 n n C14 F15 ULM sing 372 n n C7 C1 ULM sing 373 n y C12 C10 ULM sing 374 n n C2 C3 ULM doub 375 n y C1 C11 ULM sing 376 n n C1 N4 ULM doub 377 n y F14 C11 ULM sing 378 n n C3 N4 ULM sing 379 n y F13 C11 ULM sing 380 n n C11 F12 ULM sing 381 n n C3 H1 ULM sing 382 n n C9 H2 ULM sing 383 n n C9 H3 ULM sing 384 n n C5 H4 ULM sing 385 n n C6 H5 ULM sing 386 n n O2 H6 ULM sing 387 n n C10 H7 ULM sing 388 n n C12 H8 ULM sing 389 n n C12 H9 ULM sing 390 n n C13 H10 ULM sing 391 n n C13 H11 ULM sing 392 n n # _atom_sites.entry_id 6X3D _atom_sites.fract_transf_matrix[1][1] 0.013651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003969 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ULM A 1 401 1 ULM UNK . D 4 HOH A 1 501 8 HOH HOH . D 4 HOH A 2 502 11 HOH HOH . D 4 HOH A 3 503 19 HOH HOH . D 4 HOH A 4 504 28 HOH HOH . D 4 HOH A 5 505 29 HOH HOH . D 4 HOH A 6 506 26 HOH HOH . D 4 HOH A 7 507 1 HOH HOH . E 4 HOH B 1 501 4 HOH HOH . E 4 HOH B 2 502 21 HOH HOH . E 4 HOH B 3 503 13 HOH HOH . E 4 HOH B 4 504 3 HOH HOH . E 4 HOH B 5 505 24 HOH HOH . E 4 HOH B 6 506 31 HOH HOH . E 4 HOH B 7 507 32 HOH HOH . E 4 HOH B 8 508 9 HOH HOH . E 4 HOH B 9 509 12 HOH HOH . E 4 HOH B 10 510 20 HOH HOH . E 4 HOH B 11 511 6 HOH HOH . E 4 HOH B 12 512 18 HOH HOH . E 4 HOH B 13 513 14 HOH HOH . E 4 HOH B 14 514 2 HOH HOH . E 4 HOH B 15 515 5 HOH HOH . E 4 HOH B 16 516 22 HOH HOH . E 4 HOH B 17 517 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 ULM . . . C 3 23.548 -0.251 -10.445 1 35.17 ? C2 ULM 401 A 1 HETATM 2 C C3 ULM . . . C 3 23.732 -0.677 -9.133 1 35.65 ? C3 ULM 401 A 1 HETATM 3 N N4 ULM . . . C 3 24.97 -0.772 -8.615 1 37.56 ? N4 ULM 401 A 1 HETATM 4 C C8 ULM . . . C 3 24.62 0.048 -11.205 1 36.82 ? C8 ULM 401 A 1 HETATM 5 C C9 ULM . . . C 3 24.615 0.512 -12.651 1 39.92 ? C9 ULM 401 A 1 HETATM 6 C C5 ULM . . . C 3 26.104 0.301 -12.971 1 41.82 ? C5 ULM 401 A 1 HETATM 7 F F1 ULM . . . C 3 26.581 1.168 -13.926 1 49.57 ? F1 ULM 401 A 1 HETATM 8 C C7 ULM . . . C 3 25.874 -0.024 -10.661 1 39.81 ? C7 ULM 401 A 1 HETATM 9 C C1 ULM . . . C 3 26.047 -0.431 -9.341 1 37.81 ? C1 ULM 401 A 1 HETATM 10 C C6 ULM . . . C 3 26.885 0.365 -11.668 1 39.93 ? C6 ULM 401 A 1 HETATM 11 O O2 ULM . . . C 3 27.27 1.739 -11.437 1 46.05 ? O2 ULM 401 A 1 HETATM 12 C C11 ULM . . . C 3 27.396 -0.561 -8.686 1 38.98 ? C11 ULM 401 A 1 HETATM 13 F F12 ULM . . . C 3 27.299 -0.79 -7.399 1 41.4 ? F12 ULM 401 A 1 HETATM 14 F F13 ULM . . . C 3 28.172 0.483 -8.874 1 43.72 ? F13 ULM 401 A 1 HETATM 15 F F14 ULM . . . C 3 27.958 -1.607 -9.193 1 40.88 ? F14 ULM 401 A 1 HETATM 16 O O1 ULM . . . C 3 22.326 -0.183 -11.023 1 33.46 ? O1 ULM 401 A 1 HETATM 17 C C10 ULM . . . C 3 21.212 -0.688 -10.325 1 35.76 ? C10 ULM 401 A 1 HETATM 18 C C12 ULM . . . C 3 21.083 -2.208 -10.475 1 36.35 ? C12 ULM 401 A 1 HETATM 19 C C13 ULM . . . C 3 19.931 -0.495 -11.143 1 34.62 ? C13 ULM 401 A 1 HETATM 20 C C14 ULM . . . C 3 19.654 -1.968 -10.931 1 39.19 ? C14 ULM 401 A 1 HETATM 21 F F15 ULM . . . C 3 18.791 -2.223 -9.973 1 45.57 ? F15 ULM 401 A 1 HETATM 22 F F16 ULM . . . C 3 19.285 -2.644 -11.978 1 43.78 ? F16 ULM 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #