data_6X3L # _model_server_result.job_id oi6CI8W5xpmfwfjAGneokA _model_server_result.datetime_utc '2024-11-05 00:17:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":805}' # _entry.id 6X3L # _exptl.entry_id 6X3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-benzyl-3-tert-butyl-1H-pyrazole-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.01 _cell.angle_gamma 90 _cell.entry_id 6X3L _cell.length_a 161.832 _cell.length_b 75.513 _cell.length_c 110.984 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 801 NAG 2 n B NAG 2 B 2 NAG A 802 NAG 2 n C NAG 1 C 1 NAG A 901 NAG 2 n C NAG 2 C 2 NAG A 902 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 448 A CYS 415 1_555 A SG CYS 458 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? disulf ? disulf2 A SG CYS 612 A CYS 579 1_555 A SG CYS 651 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? disulf ? disulf3 A SG CYS 634 A CYS 601 1_555 A SG CYS 666 A CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? disulf ? disulf4 A SG CYS 668 A CYS 635 1_555 A SG CYS 723 A CYS 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? disulf ? disulf5 A SG CYS 675 A CYS 642 1_555 A SG CYS 688 A CYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? covale ? covale1 A ND2 ASN 406 A ASN 373 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 582 A ASN 549 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C15 H18 N2 O2' _chem_comp.formula_weight 258.316 _chem_comp.id UMJ _chem_comp.mon_nstd_flag . _chem_comp.name '1-benzyl-3-tert-butyl-1H-pyrazole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 UMJ sing 401 n n C13 C11 UMJ sing 402 n n O C10 UMJ doub 403 n n C8 C9 UMJ doub 404 n y C8 C7 UMJ sing 405 n y C10 O1 UMJ sing 406 n n C10 C9 UMJ sing 407 n n C11 C7 UMJ sing 408 n n C11 C14 UMJ sing 409 n n C9 N UMJ sing 410 n y C7 N1 UMJ doub 411 n y N N1 UMJ sing 412 n y N C6 UMJ sing 413 n n C6 C UMJ sing 414 n n C C5 UMJ doub 415 n y C C1 UMJ sing 416 n y C5 C4 UMJ sing 417 n y C1 C2 UMJ doub 418 n y C4 C3 UMJ doub 419 n y C2 C3 UMJ sing 420 n y C2 H1 UMJ sing 421 n n C3 H2 UMJ sing 422 n n C5 H3 UMJ sing 423 n n C12 H4 UMJ sing 424 n n C12 H5 UMJ sing 425 n n C12 H6 UMJ sing 426 n n C13 H7 UMJ sing 427 n n C13 H8 UMJ sing 428 n n C13 H9 UMJ sing 429 n n O1 H10 UMJ sing 430 n n C8 H11 UMJ sing 431 n n C14 H12 UMJ sing 432 n n C14 H13 UMJ sing 433 n n C14 H14 UMJ sing 434 n n C6 H15 UMJ sing 435 n n C6 H16 UMJ sing 436 n n C4 H17 UMJ sing 437 n n C1 H18 UMJ sing 438 n n # _atom_sites.entry_id 6X3L _atom_sites.fract_transf_matrix[1][1] 0.006179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004658 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 UMJ A 1 805 1 UMJ MRK . E 4 GOL A 1 806 1 GOL GOL . F 5 HOH A 1 901 14 HOH HOH . F 5 HOH A 2 902 18 HOH HOH . F 5 HOH A 3 903 9 HOH HOH . F 5 HOH A 4 904 16 HOH HOH . F 5 HOH A 5 905 2 HOH HOH . F 5 HOH A 6 906 7 HOH HOH . F 5 HOH A 7 907 6 HOH HOH . F 5 HOH A 8 908 3 HOH HOH . F 5 HOH A 9 909 24 HOH HOH . F 5 HOH A 10 910 21 HOH HOH . F 5 HOH A 11 911 8 HOH HOH . F 5 HOH A 12 912 20 HOH HOH . F 5 HOH A 13 913 12 HOH HOH . F 5 HOH A 14 914 5 HOH HOH . F 5 HOH A 15 915 1 HOH HOH . F 5 HOH A 16 916 19 HOH HOH . F 5 HOH A 17 917 4 HOH HOH . F 5 HOH A 18 918 22 HOH HOH . F 5 HOH A 19 919 11 HOH HOH . F 5 HOH A 20 920 17 HOH HOH . F 5 HOH A 21 921 15 HOH HOH . F 5 HOH A 22 922 10 HOH HOH . F 5 HOH A 23 923 23 HOH HOH . F 5 HOH A 24 924 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UMJ . . . D 3 -32.964 3.802 18.332 1 89.85 ? C2 UMJ 805 A 1 HETATM 2 C C3 UMJ . . . D 3 -34.312 4.095 18.384 1 93.16 ? C3 UMJ 805 A 1 HETATM 3 C C5 UMJ . . . D 3 -34.707 2.541 16.597 1 94.88 ? C5 UMJ 805 A 1 HETATM 4 C C7 UMJ . . . D 3 -30.397 3.006 13.49 1 82.3 ? C7 UMJ 805 A 1 HETATM 5 C C9 UMJ . . . D 3 -32.6 2.919 13.429 1 81.14 ? C9 UMJ 805 A 1 HETATM 6 C C10 UMJ . . . D 3 -34.046 3.07 13.114 1 83.07 ? C10 UMJ 805 A 1 HETATM 7 C C11 UMJ . . . D 3 -28.936 3.293 13.19 1 83.63 ? C11 UMJ 805 A 1 HETATM 8 C C12 UMJ . . . D 3 -28.439 2.331 12.116 1 83.19 ? C12 UMJ 805 A 1 HETATM 9 C C13 UMJ . . . D 3 -28.776 4.721 12.673 1 84.05 ? C13 UMJ 805 A 1 HETATM 10 O O1 UMJ . . . D 3 -34.778 2.072 13.296 1 84.69 ? O1 UMJ 805 A 1 HETATM 11 O O UMJ . . . D 3 -34.422 4.184 12.692 1 82.95 -1 O UMJ 805 A 1 HETATM 12 C C8 UMJ . . . D 3 -31.522 3.513 12.825 1 82.08 ? C8 UMJ 805 A 1 HETATM 13 C C14 UMJ . . . D 3 -28.088 3.114 14.452 1 84.5 ? C14 UMJ 805 A 1 HETATM 14 N N1 UMJ . . . D 3 -30.739 2.159 14.454 1 81.61 ? N1 UMJ 805 A 1 HETATM 15 N N UMJ . . . D 3 -32.104 2.119 14.411 1 82.06 ? N UMJ 805 A 1 HETATM 16 C C6 UMJ . . . D 3 -32.81 1.357 15.442 1 84.91 ? C6 UMJ 805 A 1 HETATM 17 C C UMJ . . . D 3 -33.35 2.253 16.525 1 89.75 ? C UMJ 805 A 1 HETATM 18 C C4 UMJ . . . D 3 -35.186 3.457 17.52 1 96 ? C4 UMJ 805 A 1 HETATM 19 C C1 UMJ . . . D 3 -32.488 2.882 17.414 1 88.64 ? C1 UMJ 805 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #