data_6X3U # _model_server_result.job_id peNRKpcZSg8GLg2k7Q6tLg _model_server_result.datetime_utc '2024-11-21 14:08:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":404}' # _entry.id 6X3U # _exptl.entry_id 6X3U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X3U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 N N N ? 9 P N N ? 9 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 7 5 4 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 7 6 5 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 7 7 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 7 8 7 MAN MAN C1 O1 . O6 HO6 . sing 10 ? 7 9 8 MAN MAN C1 O1 . O2 HO2 . sing 11 ? 7 10 7 MAN MAN C1 O1 . O3 HO3 . sing 12 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n J NAG 1 F 1 NAG A 401 NAG 6 n J NAG 2 F 2 NAG A 402 NAG 6 n J BMA 3 F 3 BMA A 403 BMA 7 n K NAG 1 G 1 NAG B 401 NAG 7 n K NAG 2 G 2 NAG B 402 NAG 7 n K BMA 3 G 3 BMA B 403 BMA 7 n K MAN 4 G 4 MAN B 407 MAN 7 n K MAN 5 G 5 MAN B 408 MAN 7 n K MAN 6 G 6 MAN B 411 MAN 7 n K MAN 7 G 7 MAN B 412 MAN 7 n K MAN 8 G 8 MAN B 413 MAN 7 n K MAN 9 G 9 MAN B 415 MAN 7 n K MAN 10 G 10 MAN B 414 MAN 6 n L NAG 1 H 1 NAG C 401 NAG 6 n L NAG 2 H 2 NAG C 402 NAG 6 n L BMA 3 H 3 BMA C 403 BMA 8 n M NAG 1 M 1 NAG E 401 NAG 8 n M NAG 2 M 2 NAG E 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 136 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 139 B CYS 139 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 136 C CYS 136 1_555 C SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 D SG CYS 139 D CYS 139 1_555 D SG CYS 153 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 188 E CYS 151 1_555 E SG CYS 202 E CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 F SG CYS 23 I CYS 23 1_555 F SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 G SG CYS 22 J CYS 22 1_555 G SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 H SG CYS 23 L CYS 23 1_555 H SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 I SG CYS 22 K CYS 22 1_555 I SG CYS 96 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 80 A ASN 80 1_555 N C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 149 A ASN 149 1_555 J C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale3 B ND2 ASN 111 B ASN 111 1_555 K C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? covale ? covale4 C ND2 ASN 80 C ASN 80 1_555 P C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C ND2 ASN 149 C ASN 149 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 D ND2 ASN 111 D ASN 111 1_555 R C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 E ND2 ASN 245 E ASN 208 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale9 J O4 NAG . F NAG 2 1_555 J C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale10 K O4 NAG . G NAG 1 1_555 K C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale11 K O4 NAG . G NAG 2 1_555 K C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale12 K O3 BMA . G BMA 3 1_555 K C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale13 K O6 BMA . G BMA 3 1_555 K C1 MAN . G MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale14 K O2 MAN . G MAN 4 1_555 K C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 K O2 MAN . G MAN 5 1_555 K C1 MAN . G MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 K O6 MAN . G MAN 7 1_555 K C1 MAN . G MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale17 K O3 MAN . G MAN 7 1_555 K C1 MAN . G MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 K O2 MAN . G MAN 8 1_555 K C1 MAN . G MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 ? covale ? covale19 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale20 L O4 NAG . H NAG 2 1_555 L C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale21 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 336 n n C1 O1 NAG sing 337 n n C1 O5 NAG sing 338 n n C1 H1 NAG sing 339 n n C2 C3 NAG sing 340 n n C2 N2 NAG sing 341 n n C2 H2 NAG sing 342 n n C3 C4 NAG sing 343 n n C3 O3 NAG sing 344 n n C3 H3 NAG sing 345 n n C4 C5 NAG sing 346 n n C4 O4 NAG sing 347 n n C4 H4 NAG sing 348 n n C5 C6 NAG sing 349 n n C5 O5 NAG sing 350 n n C5 H5 NAG sing 351 n n C6 O6 NAG sing 352 n n C6 H61 NAG sing 353 n n C6 H62 NAG sing 354 n n C7 C8 NAG sing 355 n n C7 N2 NAG sing 356 n n C7 O7 NAG doub 357 n n C8 H81 NAG sing 358 n n C8 H82 NAG sing 359 n n C8 H83 NAG sing 360 n n N2 HN2 NAG sing 361 n n O1 HO1 NAG sing 362 n n O3 HO3 NAG sing 363 n n O4 HO4 NAG sing 364 n n O6 HO6 NAG sing 365 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6X3U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 9 NAG A 1 404 404 NAG NAG . O 10 ABU A 1 405 501 ABU ABU . P 9 NAG C 1 404 404 NAG NAG . Q 10 ABU C 1 405 501 ABU ABU . R 9 NAG D 1 401 401 NAG NAG . S 11 FYP D 1 402 406 FYP FYP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 9 147.189 94.817 149.346 1 35.99 ? C1 NAG 404 C 1 HETATM 2 C C2 NAG . . . P 9 146.959 93.497 150.07 1 35.99 ? C2 NAG 404 C 1 HETATM 3 C C3 NAG . . . P 9 147.887 92.434 149.501 1 35.99 ? C3 NAG 404 C 1 HETATM 4 C C4 NAG . . . P 9 147.638 92.318 148.005 1 35.99 ? C4 NAG 404 C 1 HETATM 5 C C5 NAG . . . P 9 147.845 93.679 147.352 1 35.99 ? C5 NAG 404 C 1 HETATM 6 C C6 NAG . . . P 9 147.601 93.615 145.848 1 35.99 ? C6 NAG 404 C 1 HETATM 7 C C7 NAG . . . P 9 147.033 92.661 152.354 1 35.99 ? C7 NAG 404 C 1 HETATM 8 C C8 NAG . . . P 9 148.286 92.191 153.029 1 35.99 ? C8 NAG 404 C 1 HETATM 9 N N2 NAG . . . P 9 147.184 93.661 151.492 1 35.99 ? N2 NAG 404 C 1 HETATM 10 O O3 NAG . . . P 9 147.633 91.176 150.132 1 35.99 ? O3 NAG 404 C 1 HETATM 11 O O4 NAG . . . P 9 148.541 91.366 147.434 1 35.99 ? O4 NAG 404 C 1 HETATM 12 O O5 NAG . . . P 9 146.972 94.642 147.945 1 35.99 ? O5 NAG 404 C 1 HETATM 13 O O6 NAG . . . P 9 146.198 93.494 145.593 1 35.99 ? O6 NAG 404 C 1 HETATM 14 O O7 NAG . . . P 9 145.943 92.164 152.583 1 35.99 ? O7 NAG 404 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #