data_6X3V # _model_server_result.job_id YYbKcJuttXEg85QMX9vpnw _model_server_result.datetime_utc '2024-11-21 13:54:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":403}' # _entry.id 6X3V # _exptl.entry_id 6X3V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 244.289 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Etomidate _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X3V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 Q N N ? 11 T N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 7 5 4 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 7 6 5 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 7 7 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 7 8 7 MAN MAN C1 O1 . O6 HO6 . sing 10 ? 7 9 8 MAN MAN C1 O1 . O2 HO2 . sing 11 ? 7 10 7 MAN MAN C1 O1 . O3 HO3 . sing 12 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n J NAG 1 F 1 NAG A 401 NAG 6 n J NAG 2 F 2 NAG A 402 NAG 6 n J BMA 3 F 3 BMA A 403 BMA 7 n K NAG 1 G 1 NAG B 401 NAG 7 n K NAG 2 G 2 NAG B 402 NAG 7 n K BMA 3 G 3 BMA B 403 BMA 7 n K MAN 4 G 4 MAN B 407 MAN 7 n K MAN 5 G 5 MAN B 408 MAN 7 n K MAN 6 G 6 MAN B 411 MAN 7 n K MAN 7 G 7 MAN B 412 MAN 7 n K MAN 8 G 8 MAN B 413 MAN 7 n K MAN 9 G 9 MAN B 415 MAN 7 n K MAN 10 G 10 MAN B 414 MAN 6 n L NAG 1 H 1 NAG C 401 NAG 6 n L NAG 2 H 2 NAG C 402 NAG 6 n L BMA 3 H 3 BMA C 403 BMA 6 n M NAG 1 M 1 NAG D 401 NAG 6 n M NAG 2 M 2 NAG D 402 NAG 6 n M BMA 3 M 3 BMA D 403 BMA 8 n N NAG 1 N 1 NAG E 401 NAG 8 n N NAG 2 N 2 NAG E 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 136 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 139 B CYS 139 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 136 C CYS 136 1_555 C SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 139 D CYS 139 1_555 D SG CYS 153 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 188 E CYS 151 1_555 E SG CYS 202 E CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 F SG CYS 23 I CYS 23 1_555 F SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 G SG CYS 22 J CYS 22 1_555 G SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 H SG CYS 23 L CYS 23 1_555 H SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 I SG CYS 22 K CYS 22 1_555 I SG CYS 96 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 80 A ASN 80 1_555 O C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 149 A ASN 149 1_555 J C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B ND2 ASN 111 B ASN 111 1_555 K C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 C ND2 ASN 80 C ASN 80 1_555 R C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C ND2 ASN 149 C ASN 149 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 D ND2 ASN 111 D ASN 111 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 E ND2 ASN 245 E ASN 208 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 J O4 NAG . F NAG 2 1_555 J C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 K O4 NAG . G NAG 1 1_555 K C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale11 K O4 NAG . G NAG 2 1_555 K C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 K O3 BMA . G BMA 3 1_555 K C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale13 K O6 BMA . G BMA 3 1_555 K C1 MAN . G MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 K O2 MAN . G MAN 4 1_555 K C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 K O2 MAN . G MAN 5 1_555 K C1 MAN . G MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 K O6 MAN . G MAN 7 1_555 K C1 MAN . G MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 K O3 MAN . G MAN 7 1_555 K C1 MAN . G MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale18 K O2 MAN . G MAN 8 1_555 K C1 MAN . G MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale19 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale20 L O4 NAG . H NAG 2 1_555 L C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale21 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale22 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale23 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C14 H16 N2 O2' _chem_comp.formula_weight 244.289 _chem_comp.id V8D _chem_comp.mon_nstd_flag . _chem_comp.name Etomidate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C16 V8D doub 449 n y C14 C10 V8D sing 450 n y C16 C15 V8D sing 451 n y C10 C06 V8D doub 452 n y C15 C11 V8D doub 453 n y O02 C13 V8D doub 454 n n C17 C18 V8D sing 455 n n C17 O01 V8D sing 456 n n C06 C11 V8D sing 457 n y C06 C05 V8D sing 458 n n C13 O01 V8D sing 459 n n C13 C08 V8D sing 460 n n C05 C07 V8D sing 461 n n C05 N03 V8D sing 462 n n C08 N03 V8D sing 463 n y C08 C12 V8D doub 464 n y N03 C09 V8D sing 465 n y C12 N04 V8D sing 466 n y C09 N04 V8D doub 467 n y C05 H1 V8D sing 468 n n C07 H2 V8D sing 469 n n C07 H3 V8D sing 470 n n C07 H4 V8D sing 471 n n C09 H5 V8D sing 472 n n C10 H6 V8D sing 473 n n C11 H7 V8D sing 474 n n C12 H8 V8D sing 475 n n C14 H9 V8D sing 476 n n C15 H10 V8D sing 477 n n C16 H11 V8D sing 478 n n C17 H12 V8D sing 479 n n C17 H13 V8D sing 480 n n C18 H14 V8D sing 481 n n C18 H15 V8D sing 482 n n C18 H16 V8D sing 483 n n # _atom_sites.entry_id 6X3V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 9 NAG A 1 401 404 NAG NAG . P 10 ABU A 1 402 405 ABU ABU . Q 11 V8D A 1 403 501 V8D EMT . R 9 NAG C 1 401 404 NAG NAG . S 10 ABU C 1 402 405 ABU ABU . T 11 V8D C 1 403 501 V8D EMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C05 V8D . . . Q 11 145.025 130.847 122.546 1 35 ? C05 V8D 403 A 1 HETATM 2 C C06 V8D . . . Q 11 144.488 130.07 121.353 1 35 ? C06 V8D 403 A 1 HETATM 3 C C07 V8D . . . Q 11 143.851 131.447 123.316 1 35 ? C07 V8D 403 A 1 HETATM 4 C C08 V8D . . . Q 11 146.996 129.51 123.215 1 35 ? C08 V8D 403 A 1 HETATM 5 C C09 V8D . . . Q 11 145.347 129.474 124.564 1 35 ? C09 V8D 403 A 1 HETATM 6 C C10 V8D . . . Q 11 144.141 130.746 120.199 1 35 ? C10 V8D 403 A 1 HETATM 7 C C11 V8D . . . Q 11 144.346 128.699 121.42 1 35 ? C11 V8D 403 A 1 HETATM 8 C C12 V8D . . . Q 11 147.331 128.703 124.289 1 35 ? C12 V8D 403 A 1 HETATM 9 C C13 V8D . . . Q 11 147.889 129.81 122.016 1 35 ? C13 V8D 403 A 1 HETATM 10 C C14 V8D . . . Q 11 143.653 130.051 119.107 1 35 ? C14 V8D 403 A 1 HETATM 11 C C15 V8D . . . Q 11 143.859 128.006 120.328 1 35 ? C15 V8D 403 A 1 HETATM 12 C C16 V8D . . . Q 11 143.511 128.68 119.173 1 35 ? C16 V8D 403 A 1 HETATM 13 C C17 V8D . . . Q 11 149.791 130.472 121.06 1 35 ? C17 V8D 403 A 1 HETATM 14 C C18 V8D . . . Q 11 151.254 130.31 121.463 1 35 ? C18 V8D 403 A 1 HETATM 15 N N03 V8D . . . Q 11 145.772 129.963 123.417 1 35 ? N03 V8D 403 A 1 HETATM 16 N N04 V8D . . . Q 11 146.283 128.713 125.093 1 35 ? N04 V8D 403 A 1 HETATM 17 O O01 V8D . . . Q 11 148.992 130.204 122.175 1 35 ? O01 V8D 403 A 1 HETATM 18 O O02 V8D . . . Q 11 147.409 129.611 120.718 1 35 ? O02 V8D 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 414 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #