data_6X40 # _model_server_result.job_id Y8CkUXFlWFuwbQgMo7HeGw _model_server_result.datetime_utc '2024-10-20 20:38:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":404}' # _entry.id 6X40 # _exptl.entry_id 6X40 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 292.284 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X40 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 7 5 4 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 7 6 5 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 7 7 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 7 8 7 MAN MAN C1 O1 . O6 HO6 . sing 10 ? 7 9 8 MAN MAN C1 O1 . O2 HO2 . sing 11 ? 7 10 7 MAN MAN C1 O1 . O3 HO3 . sing 12 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n J NAG 1 F 1 NAG A 401 NAG 6 n J NAG 2 F 2 NAG A 402 NAG 6 n J BMA 3 F 3 BMA A 403 BMA 7 n K NAG 1 G 1 NAG B 401 NAG 7 n K NAG 2 G 2 NAG B 402 NAG 7 n K BMA 3 G 3 BMA B 403 BMA 7 n K MAN 4 G 4 MAN B 407 MAN 7 n K MAN 5 G 5 MAN B 408 MAN 7 n K MAN 6 G 6 MAN B 411 MAN 7 n K MAN 7 G 7 MAN B 412 MAN 7 n K MAN 8 G 8 MAN B 413 MAN 7 n K MAN 9 G 9 MAN B 415 MAN 7 n K MAN 10 G 10 MAN B 414 MAN 6 n L NAG 1 H 1 NAG C 401 NAG 6 n L NAG 2 H 2 NAG C 402 NAG 6 n L BMA 3 H 3 BMA C 403 BMA 6 n M NAG 1 M 1 NAG D 401 NAG 6 n M NAG 2 M 2 NAG D 402 NAG 6 n M BMA 3 M 3 BMA D 403 BMA 8 n N NAG 1 N 1 NAG E 401 NAG 8 n N NAG 2 N 2 NAG E 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 136 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 139 B CYS 139 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 136 C CYS 136 1_555 C SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 D SG CYS 139 D CYS 139 1_555 D SG CYS 153 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 E SG CYS 188 E CYS 151 1_555 E SG CYS 202 E CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 F SG CYS 23 I CYS 23 1_555 F SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 G SG CYS 22 J CYS 22 1_555 G SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 H SG CYS 23 L CYS 23 1_555 H SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 I SG CYS 22 K CYS 22 1_555 I SG CYS 96 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 80 A ASN 80 1_555 O C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 149 A ASN 149 1_555 J C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale3 B ND2 ASN 111 B ASN 111 1_555 K C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale4 C ND2 ASN 80 C ASN 80 1_555 Q C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C ND2 ASN 149 C ASN 149 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale6 D ND2 ASN 111 D ASN 111 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale7 E ND2 ASN 245 E ASN 208 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale9 J O4 NAG . F NAG 2 1_555 J C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale10 K O4 NAG . G NAG 1 1_555 K C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale11 K O4 NAG . G NAG 2 1_555 K C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale12 K O3 BMA . G BMA 3 1_555 K C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale13 K O6 BMA . G BMA 3 1_555 K C1 MAN . G MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale14 K O2 MAN . G MAN 4 1_555 K C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale15 K O2 MAN . G MAN 5 1_555 K C1 MAN . G MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale16 K O6 MAN . G MAN 7 1_555 K C1 MAN . G MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale17 K O3 MAN . G MAN 7 1_555 K C1 MAN . G MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 K O2 MAN . G MAN 8 1_555 K C1 MAN . G MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale19 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale20 L O4 NAG . H NAG 2 1_555 L C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale21 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale22 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale23 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C15 H16 O6' _chem_comp.formula_weight 292.284 _chem_comp.id RI5 _chem_comp.mon_nstd_flag . _chem_comp.name '(1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PICROTOXIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 RI5 sing 368 n n C01 H01 RI5 sing 369 n n C01 H01A RI5 sing 370 n n C01 H01B RI5 sing 371 n n C02 C03 RI5 doub 372 n n C02 C04 RI5 sing 373 n n C03 H03 RI5 sing 374 n n C03 H03A RI5 sing 375 n n C05 C04 RI5 sing 376 n n C04 C09 RI5 sing 377 n n C04 H04 RI5 sing 378 n n C06 C05 RI5 sing 379 n n C05 O12 RI5 sing 380 n n C05 H05 RI5 sing 381 n n C06 O19 RI5 sing 382 n n C06 C07 RI5 sing 383 n n C06 H06 RI5 sing 384 n n C21 C07 RI5 sing 385 n n C07 C15 RI5 sing 386 n n C07 C08 RI5 sing 387 n n O20 C08 RI5 sing 388 n n C08 C09 RI5 sing 389 n n C08 C13 RI5 sing 390 n n C09 C10 RI5 sing 391 n n C09 H09 RI5 sing 392 n n O12 C10 RI5 sing 393 n n C10 O11 RI5 doub 394 n n C14 C13 RI5 sing 395 n n C13 H13 RI5 sing 396 n n C13 H13A RI5 sing 397 n n C15 C14 RI5 sing 398 n n O16 C14 RI5 sing 399 n n C14 H14 RI5 sing 400 n n C17 C15 RI5 sing 401 n n C15 O16 RI5 sing 402 n n O19 C17 RI5 sing 403 n n C17 O18 RI5 doub 404 n n O20 HO20 RI5 sing 405 n n C21 H21 RI5 sing 406 n n C21 H21A RI5 sing 407 n n C21 H21B RI5 sing 408 n n # _atom_sites.entry_id 6X40 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 9 NAG A 1 404 404 NAG NAG . P 10 ABU A 1 405 501 ABU ABU . Q 9 NAG C 1 404 404 NAG NAG . R 10 ABU C 1 405 501 ABU ABU . S 11 RI5 D 1 404 501 RI5 RI5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 RI5 . . . S 11 102.693 149.494 126.256 1 100.91 ? C01 RI5 404 D 1 HETATM 2 C C02 RI5 . . . S 11 103.338 148.387 127.03 1 100.91 ? C02 RI5 404 D 1 HETATM 3 C C03 RI5 . . . S 11 104.168 148.678 128.024 1 100.91 ? C03 RI5 404 D 1 HETATM 4 C C04 RI5 . . . S 11 102.944 146.983 126.623 1 100.91 ? C04 RI5 404 D 1 HETATM 5 C C05 RI5 . . . S 11 103.734 145.796 127.177 1 100.91 ? C05 RI5 404 D 1 HETATM 6 C C06 RI5 . . . S 11 105.203 146.209 127.052 1 100.91 ? C06 RI5 404 D 1 HETATM 7 C C07 RI5 . . . S 11 105.49 146.656 125.563 1 100.91 ? C07 RI5 404 D 1 HETATM 8 C C08 RI5 . . . S 11 104.357 147.108 124.559 1 100.91 ? C08 RI5 404 D 1 HETATM 9 C C09 RI5 . . . S 11 103.001 146.653 125.137 1 100.91 ? C09 RI5 404 D 1 HETATM 10 C C10 RI5 . . . S 11 102.885 145.151 125.132 1 100.91 ? C10 RI5 404 D 1 HETATM 11 O O11 RI5 . . . S 11 102.443 144.416 124.292 1 100.91 ? O11 RI5 404 D 1 HETATM 12 O O12 RI5 . . . S 11 103.389 144.677 126.301 1 100.91 ? O12 RI5 404 D 1 HETATM 13 C C13 RI5 . . . S 11 104.735 146.444 123.22 1 100.91 ? C13 RI5 404 D 1 HETATM 14 C C14 RI5 . . . S 11 105.317 145.127 123.644 1 100.91 ? C14 RI5 404 D 1 HETATM 15 C C15 RI5 . . . S 11 105.911 145.314 124.98 1 100.91 ? C15 RI5 404 D 1 HETATM 16 O O16 RI5 . . . S 11 106.754 145.189 123.811 1 100.91 ? O16 RI5 404 D 1 HETATM 17 C C17 RI5 . . . S 11 106.059 144.331 126.078 1 100.91 ? C17 RI5 404 D 1 HETATM 18 O O18 RI5 . . . S 11 106.209 143.145 126.006 1 100.91 ? O18 RI5 404 D 1 HETATM 19 O O19 RI5 . . . S 11 105.993 144.994 127.248 1 100.91 ? O19 RI5 404 D 1 HETATM 20 O O20 RI5 . . . S 11 104.376 148.531 124.375 1 100.91 ? O20 RI5 404 D 1 HETATM 21 C C21 RI5 . . . S 11 106.703 147.565 125.483 1 100.91 ? C21 RI5 404 D 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #