data_6X47 # _model_server_result.job_id tbT7gl94ZIIh4bV4t5dz4w _model_server_result.datetime_utc '2024-11-16 09:45:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6X47 # _exptl.entry_id 6X47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.399 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-2-naphthonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.48 _cell.angle_gamma 90 _cell.entry_id 6X47 _cell.length_a 163.056 _cell.length_b 74.105 _cell.length_c 108.429 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H17 N3 O4' _chem_comp.formula_weight 399.399 _chem_comp.id 7AX _chem_comp.mon_nstd_flag . _chem_comp.name 7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-2-naphthonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JLJ649 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C00 7AX doub 1 n y C01 C02 7AX sing 2 n y C00 C05 7AX sing 3 n y C02 C03 7AX doub 4 n y C05 O0B 7AX sing 5 n n C05 C04 7AX doub 6 n y C0D O0B 7AX sing 7 n n C0D C0E 7AX sing 8 n n C03 C04 7AX sing 9 n y O0Q C0K 7AX doub 10 n n C04 O0A 7AX sing 11 n n C0E N0H 7AX sing 12 n n C0K N0H 7AX sing 13 n n C0K N0M 7AX sing 14 n n N0H C0P 7AX sing 15 n n O0A CAL 7AX sing 16 n n N0M C0N 7AX sing 17 n n C0P C0O 7AX doub 18 n n CAK CAL 7AX doub 19 n y CAK CAJ 7AX sing 20 n y CAL CAM 7AX sing 21 n y C0N C0O 7AX sing 22 n n C0N O0S 7AX doub 23 n n CBB CAJ 7AX doub 24 n y CBB CBA 7AX sing 25 n y CAJ CAI 7AX sing 26 n y CAM CAH 7AX doub 27 n y NBD CBC 7AX trip 28 n n CBC CBA 7AX sing 29 n n CBA CAZ 7AX doub 30 n y CAI CAH 7AX sing 31 n y CAI CAY 7AX doub 32 n y CAZ CAY 7AX sing 33 n y CAH H1 7AX sing 34 n n CAK H2 7AX sing 35 n n CAM H3 7AX sing 36 n n CAY H4 7AX sing 37 n n CAZ H5 7AX sing 38 n n CBB H6 7AX sing 39 n n C0P H7 7AX sing 40 n n C00 H8 7AX sing 41 n n C0D H9 7AX sing 42 n n C0D H10 7AX sing 43 n n C0E H11 7AX sing 44 n n C0E H12 7AX sing 45 n n C0O H13 7AX sing 46 n n N0M H14 7AX sing 47 n n C01 H15 7AX sing 48 n n C02 H16 7AX sing 49 n n C03 H17 7AX sing 50 n n # _atom_sites.entry_id 6X47 _atom_sites.fract_transf_matrix[1][1] 0.006133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001024 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 7AX _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 7AX _pdbx_nonpoly_scheme.auth_mon_id 649 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 7AX . . . C 3 357.575 -32.933 145.611 1 68.25 ? CAH 7AX 601 A 1 HETATM 2 C CAI 7AX . . . C 3 357.745 -31.547 145.872 1 71.65 ? CAI 7AX 601 A 1 HETATM 3 C CAJ 7AX . . . C 3 358.818 -30.882 145.302 1 71.36 ? CAJ 7AX 601 A 1 HETATM 4 C CAK 7AX . . . C 3 359.728 -31.585 144.47 1 63.55 ? CAK 7AX 601 A 1 HETATM 5 C CAL 7AX . . . C 3 359.564 -32.95 144.214 1 62.68 ? CAL 7AX 601 A 1 HETATM 6 C CAM 7AX . . . C 3 358.48 -33.625 144.786 1 67.01 ? CAM 7AX 601 A 1 HETATM 7 C CAY 7AX . . . C 3 356.812 -30.823 146.724 1 83.59 ? CAY 7AX 601 A 1 HETATM 8 C CAZ 7AX . . . C 3 356.996 -29.491 146.961 1 83.63 ? CAZ 7AX 601 A 1 HETATM 9 C CBA 7AX . . . C 3 358.109 -28.796 146.372 1 84.86 ? CBA 7AX 601 A 1 HETATM 10 C CBB 7AX . . . C 3 359.007 -29.476 145.555 1 83.58 ? CBB 7AX 601 A 1 HETATM 11 C CBC 7AX . . . C 3 358.289 -27.315 146.654 1 90.59 ? CBC 7AX 601 A 1 HETATM 12 N NBD 7AX . . . C 3 358.421 -26.186 146.874 1 93.18 ? NBD 7AX 601 A 1 HETATM 13 C C0P 7AX . . . C 3 358.555 -35.487 140.728 1 58.78 ? C0P 7AX 601 A 1 HETATM 14 C C00 7AX . . . C 3 363.224 -32.366 141.18 1 60.52 ? C00 7AX 601 A 1 HETATM 15 C C0D 7AX . . . C 3 360.813 -33.279 139.361 1 66.61 ? C0D 7AX 601 A 1 HETATM 16 C C0E 7AX . . . C 3 359.606 -34.171 138.953 1 63.83 ? C0E 7AX 601 A 1 HETATM 17 C C0K 7AX . . . C 3 360.291 -36.58 139.406 1 63.9 ? C0K 7AX 601 A 1 HETATM 18 C C0N 7AX . . . C 3 359.184 -37.805 141.2 1 67.57 ? C0N 7AX 601 A 1 HETATM 19 C C0O 7AX . . . C 3 358.376 -36.61 141.474 1 66.57 ? C0O 7AX 601 A 1 HETATM 20 N N0H 7AX . . . C 3 359.52 -35.464 139.682 1 60.69 ? N0H 7AX 601 A 1 HETATM 21 N N0M 7AX . . . C 3 360.07 -37.673 140.183 1 64.8 ? N0M 7AX 601 A 1 HETATM 22 O O0A 7AX . . . C 3 360.511 -33.652 143.355 1 56.22 ? O0A 7AX 601 A 1 HETATM 23 O O0B 7AX . . . C 3 360.877 -33.258 140.788 1 65.05 ? O0B 7AX 601 A 1 HETATM 24 O O0Q 7AX . . . C 3 361.143 -36.636 138.522 1 66.92 ? O0Q 7AX 601 A 1 HETATM 25 O O0S 7AX . . . C 3 359.086 -38.858 141.825 1 68.92 ? O0S 7AX 601 A 1 HETATM 26 C C01 7AX . . . C 3 364.215 -32.071 142.151 1 70.27 ? C01 7AX 601 A 1 HETATM 27 C C02 7AX . . . C 3 363.97 -32.304 143.522 1 64.46 ? C02 7AX 601 A 1 HETATM 28 C C03 7AX . . . C 3 362.73 -32.837 143.928 1 65.73 ? C03 7AX 601 A 1 HETATM 29 C C04 7AX . . . C 3 361.726 -33.128 142.963 1 62.94 ? C04 7AX 601 A 1 HETATM 30 C C05 7AX . . . C 3 361.961 -32.907 141.581 1 60.22 ? C05 7AX 601 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #