data_6X48 # _model_server_result.job_id cw_KUSUoIGrNRjkytwFGRA _model_server_result.datetime_utc '2024-11-24 18:46:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":808}' # _entry.id 6X48 # _exptl.entry_id 6X48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.222 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3,5-dichlorobenzene-1-carbonyl)-5,5-dimethyl-L-norleucine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.23 _cell.angle_gamma 90 _cell.entry_id 6X48 _cell.length_a 162.35 _cell.length_b 78.49 _cell.length_c 111.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 801 NAG 2 n B NAG 2 B 2 NAG A 802 NAG 2 n B BMA 3 B 3 BMA A 803 BMA 2 n B MAN 4 B 4 MAN A 804 MAN 3 n C NAG 1 C 1 NAG A 805 NAG 3 n C NAG 2 C 2 NAG A 806 NAG 3 n C BMA 3 C 3 BMA A 807 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 363 A CYS 415 1_555 A SG CYS 373 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? disulf ? disulf2 A SG CYS 527 A CYS 579 1_555 A SG CYS 566 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? disulf ? disulf3 A SG CYS 549 A CYS 601 1_555 A SG CYS 581 A CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? disulf ? disulf4 A SG CYS 583 A CYS 635 1_555 A SG CYS 638 A CYS 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? disulf ? disulf5 A SG CYS 590 A CYS 642 1_555 A SG CYS 603 A CYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? covale ? covale1 A ND2 ASN 321 A ASN 373 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A ND2 ASN 497 A ASN 549 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale5 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C15 H19 Cl2 N O3' _chem_comp.formula_weight 332.222 _chem_comp.id UP4 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3,5-dichlorobenzene-1-carbonyl)-5,5-dimethyl-L-norleucine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C6 UP4 sing 449 n n C7 C6 UP4 sing 450 n n O1 C3 UP4 doub 451 n n C6 C9 UP4 sing 452 n n C6 C5 UP4 sing 453 n n O C3 UP4 sing 454 n n C3 C2 UP4 sing 455 n n C4 C5 UP4 sing 456 n n C4 C2 UP4 sing 457 n n C2 N UP4 sing 458 n n N C1 UP4 sing 459 n n C1 O2 UP4 doub 460 n n C1 C UP4 sing 461 n n C14 C UP4 doub 462 n y C14 C13 UP4 sing 463 n y C C10 UP4 sing 464 n y CL C13 UP4 sing 465 n n C13 C12 UP4 doub 466 n y C10 C11 UP4 doub 467 n y C12 C11 UP4 sing 468 n y C11 CL1 UP4 sing 469 n n C2 H1 UP4 sing 470 n n C5 H2 UP4 sing 471 n n C5 H3 UP4 sing 472 n n C7 H4 UP4 sing 473 n n C7 H5 UP4 sing 474 n n C7 H6 UP4 sing 475 n n C9 H7 UP4 sing 476 n n C9 H8 UP4 sing 477 n n C9 H9 UP4 sing 478 n n C10 H10 UP4 sing 479 n n C12 H11 UP4 sing 480 n n C14 H12 UP4 sing 481 n n N H13 UP4 sing 482 n n O H14 UP4 sing 483 n n C4 H15 UP4 sing 484 n n C4 H16 UP4 sing 485 n n C8 H17 UP4 sing 486 n n C8 H18 UP4 sing 487 n n C8 H19 UP4 sing 488 n n # _atom_sites.entry_id 6X48 _atom_sites.fract_transf_matrix[1][1] 0.00616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00468 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 UP4 A 1 808 4 UP4 MRK . E 5 UNL A 1 809 1 UNL UNL . F 6 GOL A 1 810 1 GOL GOL . G 7 HOH A 1 901 26 HOH HOH . G 7 HOH A 2 902 20 HOH HOH . G 7 HOH A 3 903 1 HOH HOH . G 7 HOH A 4 904 18 HOH HOH . G 7 HOH A 5 905 28 HOH HOH . G 7 HOH A 6 906 14 HOH HOH . G 7 HOH A 7 907 17 HOH HOH . G 7 HOH A 8 908 3 HOH HOH . G 7 HOH A 9 909 16 HOH HOH . G 7 HOH A 10 910 21 HOH HOH . G 7 HOH A 11 911 24 HOH HOH . G 7 HOH A 12 912 25 HOH HOH . G 7 HOH A 13 913 15 HOH HOH . G 7 HOH A 14 914 22 HOH HOH . G 7 HOH A 15 915 19 HOH HOH . G 7 HOH A 16 916 8 HOH HOH . G 7 HOH A 17 917 27 HOH HOH . G 7 HOH A 18 918 23 HOH HOH . G 7 HOH A 19 919 11 HOH HOH . G 7 HOH A 20 920 13 HOH HOH . G 7 HOH A 21 921 5 HOH HOH . G 7 HOH A 22 922 6 HOH HOH . G 7 HOH A 23 923 12 HOH HOH . G 7 HOH A 24 924 10 HOH HOH . G 7 HOH A 25 925 7 HOH HOH . G 7 HOH A 26 926 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UP4 . . . D 4 -32.997 40.335 14.289 1 77.66 ? C2 UP4 808 A 1 HETATM 2 C C3 UP4 . . . D 4 -34.228 40.142 13.389 1 77.02 ? C3 UP4 808 A 1 HETATM 3 C C5 UP4 . . . D 4 -30.442 40.667 14.034 1 76.42 ? C5 UP4 808 A 1 HETATM 4 C C7 UP4 . . . D 4 -29.388 39.165 12.324 1 78.87 ? C7 UP4 808 A 1 HETATM 5 C C9 UP4 . . . D 4 -27.967 40.403 13.929 1 79.88 ? C9 UP4 808 A 1 HETATM 6 C C10 UP4 . . . D 4 -31.758 37.727 17.632 1 102.23 ? C10 UP4 808 A 1 HETATM 7 C C11 UP4 . . . D 4 -31.144 36.643 18.234 1 107.52 ? C11 UP4 808 A 1 HETATM 8 C C12 UP4 . . . D 4 -31.592 35.351 18.045 1 101.11 ? C12 UP4 808 A 1 HETATM 9 C C13 UP4 . . . D 4 -32.697 35.167 17.239 1 93.48 ? C13 UP4 808 A 1 HETATM 10 CL CL1 UP4 . . . D 4 -29.76 36.914 19.266 1 115.27 ? CL1 UP4 808 A 1 HETATM 11 CL CL UP4 . . . D 4 -33.203 33.556 16.881 1 91.29 ? CL UP4 808 A 1 HETATM 12 C C14 UP4 . . . D 4 -33.358 36.22 16.645 1 93.03 ? C14 UP4 808 A 1 HETATM 13 C C UP4 . . . D 4 -32.868 37.51 16.817 1 95.51 ? C UP4 808 A 1 HETATM 14 C C1 UP4 . . . D 4 -33.467 38.625 16.021 1 90.04 ? C1 UP4 808 A 1 HETATM 15 O O2 UP4 . . . D 4 -34.623 39.003 16.225 1 89.71 ? O2 UP4 808 A 1 HETATM 16 N N UP4 . . . D 4 -32.682 39.146 15.064 1 83.04 ? N UP4 808 A 1 HETATM 17 O O1 UP4 . . . D 4 -34.693 41.176 12.846 1 76.72 -1 O1 UP4 808 A 1 HETATM 18 O O UP4 . . . D 4 -34.675 38.977 13.245 1 75.95 ? O UP4 808 A 1 HETATM 19 C C4 UP4 . . . D 4 -31.83 40.713 13.395 1 75.85 ? C4 UP4 808 A 1 HETATM 20 C C6 UP4 . . . D 4 -29.243 40.469 13.103 1 77.88 ? C6 UP4 808 A 1 HETATM 21 C C8 UP4 . . . D 4 -29.143 41.637 12.129 1 77.11 ? C8 UP4 808 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #