data_6X49 # _model_server_result.job_id PNziv7NL3B4KN24b8IiUlg _model_server_result.datetime_utc '2024-11-16 10:04:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6X49 # _exptl.entry_id 6X49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.399 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-2-naphthonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.34 _cell.angle_gamma 90 _cell.entry_id 6X49 _cell.length_a 162.144 _cell.length_b 73.989 _cell.length_c 107.856 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H17 N3 O4' _chem_comp.formula_weight 399.399 _chem_comp.id 7AX _chem_comp.mon_nstd_flag . _chem_comp.name 7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-2-naphthonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JLJ649 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C00 7AX doub 1 n y C01 C02 7AX sing 2 n y C00 C05 7AX sing 3 n y C02 C03 7AX doub 4 n y C05 O0B 7AX sing 5 n n C05 C04 7AX doub 6 n y C0D O0B 7AX sing 7 n n C0D C0E 7AX sing 8 n n C03 C04 7AX sing 9 n y O0Q C0K 7AX doub 10 n n C04 O0A 7AX sing 11 n n C0E N0H 7AX sing 12 n n C0K N0H 7AX sing 13 n n C0K N0M 7AX sing 14 n n N0H C0P 7AX sing 15 n n O0A CAL 7AX sing 16 n n N0M C0N 7AX sing 17 n n C0P C0O 7AX doub 18 n n CAK CAL 7AX doub 19 n y CAK CAJ 7AX sing 20 n y CAL CAM 7AX sing 21 n y C0N C0O 7AX sing 22 n n C0N O0S 7AX doub 23 n n CBB CAJ 7AX doub 24 n y CBB CBA 7AX sing 25 n y CAJ CAI 7AX sing 26 n y CAM CAH 7AX doub 27 n y NBD CBC 7AX trip 28 n n CBC CBA 7AX sing 29 n n CBA CAZ 7AX doub 30 n y CAI CAH 7AX sing 31 n y CAI CAY 7AX doub 32 n y CAZ CAY 7AX sing 33 n y CAH H1 7AX sing 34 n n CAK H2 7AX sing 35 n n CAM H3 7AX sing 36 n n CAY H4 7AX sing 37 n n CAZ H5 7AX sing 38 n n CBB H6 7AX sing 39 n n C0P H7 7AX sing 40 n n C00 H8 7AX sing 41 n n C0D H9 7AX sing 42 n n C0D H10 7AX sing 43 n n C0E H11 7AX sing 44 n n C0E H12 7AX sing 45 n n C0O H13 7AX sing 46 n n N0M H14 7AX sing 47 n n C01 H15 7AX sing 48 n n C02 H16 7AX sing 49 n n C03 H17 7AX sing 50 n n # _atom_sites.entry_id 6X49 _atom_sites.fract_transf_matrix[1][1] 0.006167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 7AX A 1 601 1 7AX 649 . D 4 SO4 A 1 602 1 SO4 SO4 . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . F 5 HOH B 1 501 3 HOH HOH . F 5 HOH B 2 502 4 HOH HOH . F 5 HOH B 3 503 5 HOH HOH . F 5 HOH B 4 504 6 HOH HOH . F 5 HOH B 5 505 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 7AX . . . C 3 518.736 -34.239 144.228 1 61.4 ? CAH 7AX 601 A 1 HETATM 2 C CAI 7AX . . . C 3 518.96 -32.85 144.424 1 63.57 ? CAI 7AX 601 A 1 HETATM 3 C CAJ 7AX . . . C 3 520.108 -32.268 143.918 1 62.98 ? CAJ 7AX 601 A 1 HETATM 4 C CAK 7AX . . . C 3 521.05 -33.057 143.215 1 63.78 ? CAK 7AX 601 A 1 HETATM 5 C CAL 7AX . . . C 3 520.833 -34.426 143.017 1 59.19 ? CAL 7AX 601 A 1 HETATM 6 C CAM 7AX . . . C 3 519.673 -35.02 143.525 1 53.13 ? CAM 7AX 601 A 1 HETATM 7 C CAY 7AX . . . C 3 518.006 -32.024 145.144 1 70.61 ? CAY 7AX 601 A 1 HETATM 8 C CAZ 7AX . . . C 3 518.245 -30.691 145.32 1 69.09 ? CAZ 7AX 601 A 1 HETATM 9 C CBA 7AX . . . C 3 519.438 -30.093 144.794 1 65.72 ? CBA 7AX 601 A 1 HETATM 10 C CBB 7AX . . . C 3 520.355 -30.865 144.103 1 63.37 ? CBB 7AX 601 A 1 HETATM 11 C CBC 7AX . . . C 3 519.694 -28.612 144.996 1 64.63 ? CBC 7AX 601 A 1 HETATM 12 N NBD 7AX . . . C 3 519.897 -27.48 145.147 1 62.95 ? NBD 7AX 601 A 1 HETATM 13 C C0P 7AX . . . C 3 519.346 -37.328 139.814 1 58.91 ? C0P 7AX 601 A 1 HETATM 14 C C00 7AX . . . C 3 524.131 -33.923 139.713 1 59.82 ? C00 7AX 601 A 1 HETATM 15 C C0D 7AX . . . C 3 521.592 -35.093 138.288 1 64.88 ? C0D 7AX 601 A 1 HETATM 16 C C0E 7AX . . . C 3 520.306 -35.928 138.049 1 64.56 ? C0E 7AX 601 A 1 HETATM 17 C C0K 7AX . . . C 3 520.949 -38.376 138.288 1 62.4 ? C0K 7AX 601 A 1 HETATM 18 C C0N 7AX . . . C 3 519.932 -39.684 140.089 1 66.55 ? C0N 7AX 601 A 1 HETATM 19 C C0O 7AX . . . C 3 519.187 -38.49 140.499 1 64.17 ? C0O 7AX 601 A 1 HETATM 20 N N0H 7AX . . . C 3 520.237 -37.262 138.702 1 57.43 ? N0H 7AX 601 A 1 HETATM 21 N N0M 7AX . . . C 3 520.746 -39.509 139.013 1 62.74 ? N0M 7AX 601 A 1 HETATM 22 O O0A 7AX . . . C 3 521.811 -35.221 142.293 1 58.88 ? O0A 7AX 601 A 1 HETATM 23 O O0B 7AX . . . C 3 521.815 -34.97 139.688 1 59.62 ? O0B 7AX 601 A 1 HETATM 24 O O0Q 7AX . . . C 3 521.734 -38.39 137.337 1 66.42 ? O0Q 7AX 601 A 1 HETATM 25 O O0S 7AX . . . C 3 519.834 -40.77 140.663 1 69.79 ? O0S 7AX 601 A 1 HETATM 26 C C01 7AX . . . C 3 525.214 -33.516 140.531 1 64.49 ? C01 7AX 601 A 1 HETATM 27 C C02 7AX . . . C 3 525.164 -33.681 141.933 1 66.38 ? C02 7AX 601 A 1 HETATM 28 C C03 7AX . . . C 3 524.024 -34.255 142.532 1 57.93 ? C03 7AX 601 A 1 HETATM 29 C C04 7AX . . . C 3 522.929 -34.662 141.724 1 60.9 ? C04 7AX 601 A 1 HETATM 30 C C05 7AX . . . C 3 522.966 -34.509 140.312 1 62.42 ? C05 7AX 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #