data_6X4A # _model_server_result.job_id PTqri4UzZDdQM3pgdxBj0A _model_server_result.datetime_utc '2024-11-16 10:04:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6X4A # _exptl.entry_id 6X4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.87 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-8-methyl-2-naphthonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.05 _cell.angle_gamma 90 _cell.entry_id 6X4A _cell.length_a 161.769 _cell.length_b 73.976 _cell.length_c 107.899 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H18 Cl N3 O4' _chem_comp.formula_weight 447.87 _chem_comp.id 7AY _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-8-methyl-2-naphthonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JLJ651 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O0Q C0K 7AY doub 1 n n C0E C0D 7AY sing 2 n n C0E N0H 7AY sing 3 n n C0K N0H 7AY sing 4 n n C0K N0M 7AY sing 5 n n C0D O0B 7AY sing 6 n n N0H C0P 7AY sing 7 n n N0M C0N 7AY sing 8 n n C0P C0O 7AY doub 9 n n O0B C05 7AY sing 10 n n C0N C0O 7AY sing 11 n n C0N O0S 7AY doub 12 n n C00 C05 7AY doub 13 n y C00 C01 7AY sing 14 n y C05 C04 7AY sing 15 n y C01 C02 7AY doub 16 n y C04 O0A 7AY sing 17 n n C04 C03 7AY doub 18 n y C02 C03 7AY sing 19 n y O0A CAL 7AY sing 20 n n CAM CAL 7AY doub 21 n y CAM CAH 7AY sing 22 n y CAL CAK 7AY sing 23 n y CL1 CAH 7AY sing 24 n n CAH CAI 7AY doub 25 n y CAK C31 7AY sing 26 n n CAK CAJ 7AY doub 27 n y CAI CAJ 7AY sing 28 n y CAI CAY 7AY sing 29 n y CAJ CBB 7AY sing 30 n y CAY CAZ 7AY doub 31 n y CBB CBA 7AY doub 32 n y CAZ CBA 7AY sing 33 n y CBA CBC 7AY sing 34 n n CBC NBD 7AY trip 35 n n CAM H1 7AY sing 36 n n CAY H2 7AY sing 37 n n CAZ H3 7AY sing 38 n n CBB H4 7AY sing 39 n n C0P H5 7AY sing 40 n n C00 H6 7AY sing 41 n n C0D H7 7AY sing 42 n n C0D H8 7AY sing 43 n n C0E H9 7AY sing 44 n n C0E H10 7AY sing 45 n n C0O H11 7AY sing 46 n n N0M H12 7AY sing 47 n n C01 H13 7AY sing 48 n n C02 H14 7AY sing 49 n n C03 H15 7AY sing 50 n n C31 H16 7AY sing 51 n n C31 H17 7AY sing 52 n n C31 H18 7AY sing 53 n n # _atom_sites.entry_id 6X4A _atom_sites.fract_transf_matrix[1][1] 0.006182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001095 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 7AY A 1 601 1 7AY 651 . D 4 SO4 A 1 602 1 SO4 SO4 . E 4 SO4 A 1 603 2 SO4 SO4 . F 5 HOH A 1 701 16 HOH HOH . F 5 HOH A 2 702 12 HOH HOH . F 5 HOH A 3 703 6 HOH HOH . F 5 HOH A 4 704 21 HOH HOH . F 5 HOH A 5 705 1 HOH HOH . F 5 HOH A 6 706 8 HOH HOH . F 5 HOH A 7 707 46 HOH HOH . F 5 HOH A 8 708 7 HOH HOH . F 5 HOH A 9 709 20 HOH HOH . F 5 HOH A 10 710 2 HOH HOH . F 5 HOH A 11 711 30 HOH HOH . F 5 HOH A 12 712 26 HOH HOH . F 5 HOH A 13 713 43 HOH HOH . F 5 HOH A 14 714 27 HOH HOH . F 5 HOH A 15 715 36 HOH HOH . F 5 HOH A 16 716 10 HOH HOH . F 5 HOH A 17 717 31 HOH HOH . F 5 HOH A 18 718 35 HOH HOH . F 5 HOH A 19 719 13 HOH HOH . F 5 HOH A 20 720 29 HOH HOH . F 5 HOH A 21 721 45 HOH HOH . G 5 HOH B 1 501 42 HOH HOH . G 5 HOH B 2 502 41 HOH HOH . G 5 HOH B 3 503 9 HOH HOH . G 5 HOH B 4 504 37 HOH HOH . G 5 HOH B 5 505 23 HOH HOH . G 5 HOH B 6 506 15 HOH HOH . G 5 HOH B 7 507 38 HOH HOH . G 5 HOH B 8 508 19 HOH HOH . G 5 HOH B 9 509 39 HOH HOH . G 5 HOH B 10 510 17 HOH HOH . G 5 HOH B 11 511 33 HOH HOH . G 5 HOH B 12 512 34 HOH HOH . G 5 HOH B 13 513 28 HOH HOH . G 5 HOH B 14 514 5 HOH HOH . G 5 HOH B 15 515 18 HOH HOH . G 5 HOH B 16 516 24 HOH HOH . G 5 HOH B 17 517 32 HOH HOH . G 5 HOH B 18 518 25 HOH HOH . G 5 HOH B 19 519 3 HOH HOH . G 5 HOH B 20 520 40 HOH HOH . G 5 HOH B 21 521 14 HOH HOH . G 5 HOH B 22 522 11 HOH HOH . G 5 HOH B 23 523 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 7AY . . . C 3 516.133 -31.64 143.491 1 56.6 ? CAH 7AY 601 A 1 HETATM 2 C CAI 7AY . . . C 3 515.42 -32.393 144.462 1 53.19 ? CAI 7AY 601 A 1 HETATM 3 C CAJ 7AY . . . C 3 515.776 -33.712 144.658 1 56.56 ? CAJ 7AY 601 A 1 HETATM 4 C CAK 7AY . . . C 3 516.824 -34.286 143.902 1 65.15 ? CAK 7AY 601 A 1 HETATM 5 C CAL 7AY . . . C 3 517.525 -33.537 142.945 1 60.21 ? CAL 7AY 601 A 1 HETATM 6 C CAM 7AY . . . C 3 517.172 -32.207 142.741 1 56.25 ? CAM 7AY 601 A 1 HETATM 7 C CAY 7AY . . . C 3 514.337 -31.813 145.244 1 60.84 ? CAY 7AY 601 A 1 HETATM 8 C CAZ 7AY . . . C 3 513.682 -32.579 146.169 1 62.51 ? CAZ 7AY 601 A 1 HETATM 9 C CBA 7AY . . . C 3 514.059 -33.955 146.371 1 64 ? CBA 7AY 601 A 1 HETATM 10 C CBB 7AY . . . C 3 515.088 -34.515 145.63 1 53.92 ? CBB 7AY 601 A 1 HETATM 11 C CBC 7AY . . . C 3 513.343 -34.817 147.392 1 65.25 ? CBC 7AY 601 A 1 HETATM 12 N NBD 7AY . . . C 3 512.809 -35.491 148.165 1 66.5 ? NBD 7AY 601 A 1 HETATM 13 C C0P 7AY . . . C 3 516.236 -35.927 139.595 1 56.65 ? C0P 7AY 601 A 1 HETATM 14 C C00 7AY . . . C 3 520.818 -32.434 139.719 1 56.15 ? C00 7AY 601 A 1 HETATM 15 C C0D 7AY . . . C 3 518.601 -33.866 138.12 1 62.19 ? C0D 7AY 601 A 1 HETATM 16 C C0E 7AY . . . C 3 517.295 -34.641 137.808 1 63.83 ? C0E 7AY 601 A 1 HETATM 17 C C0K 7AY . . . C 3 517.901 -37.065 138.216 1 59.31 ? C0K 7AY 601 A 1 HETATM 18 C C0N 7AY . . . C 3 516.79 -38.263 140.024 1 59.18 ? C0N 7AY 601 A 1 HETATM 19 C C0O 7AY . . . C 3 516.032 -37.047 140.336 1 57.45 ? C0O 7AY 601 A 1 HETATM 20 N N0H 7AY . . . C 3 517.177 -35.931 138.527 1 59.51 ? N0H 7AY 601 A 1 HETATM 21 N N0M 7AY . . . C 3 517.655 -38.154 138.987 1 57.83 ? N0M 7AY 601 A 1 HETATM 22 O O0A 7AY . . . C 3 518.601 -34.128 142.168 1 60.36 ? O0A 7AY 601 A 1 HETATM 23 O O0B 7AY . . . C 3 518.776 -33.911 139.534 1 59.05 ? O0B 7AY 601 A 1 HETATM 24 O O0Q 7AY . . . C 3 518.726 -37.134 137.306 1 59.64 ? O0Q 7AY 601 A 1 HETATM 25 O O0S 7AY . . . C 3 516.671 -39.318 140.638 1 60.67 ? O0S 7AY 601 A 1 HETATM 26 C C01 7AY . . . C 3 521.732 -31.8 140.596 1 63.64 ? C01 7AY 601 A 1 HETATM 27 C C02 7AY . . . C 3 521.597 -31.946 141.994 1 60.97 ? C02 7AY 601 A 1 HETATM 28 C C03 7AY . . . C 3 520.549 -32.725 142.525 1 56.01 ? C03 7AY 601 A 1 HETATM 29 C C04 7AY . . . C 3 519.626 -33.364 141.653 1 61.67 ? C04 7AY 601 A 1 HETATM 30 C C05 7AY . . . C 3 519.75 -33.229 140.245 1 60.06 ? C05 7AY 601 A 1 HETATM 31 C C31 7AY . . . C 3 517.153 -35.732 144.172 1 57.82 ? C31 7AY 601 A 1 HETATM 32 CL CL1 7AY . . . C 3 515.726 -29.972 143.207 1 69.81 ? CL1 7AY 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #