data_6X4D # _model_server_result.job_id z9JVSoFyBoHrGEjHfkhj7g _model_server_result.datetime_utc '2024-11-16 09:42:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6X4D # _exptl.entry_id 6X4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.516 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(cyclopropylmethyl)-7-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-8-methylnaphthalene-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.02 _cell.angle_gamma 90 _cell.entry_id 6X4D _cell.length_a 162.74 _cell.length_b 74.27 _cell.length_c 108.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H25 N3 O4' _chem_comp.formula_weight 467.516 _chem_comp.id UO4 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(cyclopropylmethyl)-7-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-8-methylnaphthalene-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O0Q C0K UO4 doub 362 n n C0E C0D UO4 sing 363 n n C0E N0H UO4 sing 364 n n C0K N0H UO4 sing 365 n n C0K N0M UO4 sing 366 n n C0D O0B UO4 sing 367 n n N0H C0P UO4 sing 368 n n N0M C0N UO4 sing 369 n n C0P C0O UO4 doub 370 n n O0B C05 UO4 sing 371 n n C00 C05 UO4 doub 372 n y C00 C01 UO4 sing 373 n y C0N C0O UO4 sing 374 n n C0N O0S UO4 doub 375 n n C05 C04 UO4 sing 376 n y C01 C02 UO4 doub 377 n y C04 O0A UO4 sing 378 n n C04 C03 UO4 doub 379 n y C02 C03 UO4 sing 380 n y O0A C0C UO4 sing 381 n n C0Z C0C UO4 doub 382 n y C0Z C0Y UO4 sing 383 n y C13 C0Y UO4 sing 384 n n C13 C1C UO4 sing 385 n n C0C C0V UO4 sing 386 n y C0Y C0X UO4 doub 387 n y C1H C1C UO4 sing 388 n n C1H C1G UO4 sing 389 n n C1C C1G UO4 sing 390 n n C0V C10 UO4 sing 391 n n C0V C0W UO4 doub 392 n y C0X C0W UO4 sing 393 n y C0X C12 UO4 sing 394 n y C0W C11 UO4 sing 395 n y C12 C16 UO4 doub 396 n y C11 C15 UO4 doub 397 n y C16 C15 UO4 sing 398 n y C15 C18 UO4 sing 399 n n C18 N1B UO4 trip 400 n n C00 H1 UO4 sing 401 n n C01 H2 UO4 sing 402 n n C02 H3 UO4 sing 403 n n C03 H4 UO4 sing 404 n n C0D H5 UO4 sing 405 n n C0D H6 UO4 sing 406 n n C0E H7 UO4 sing 407 n n C0E H8 UO4 sing 408 n n N0M H9 UO4 sing 409 n n C0O H10 UO4 sing 410 n n C0P H11 UO4 sing 411 n n C0Z H12 UO4 sing 412 n n C10 H13 UO4 sing 413 n n C10 H14 UO4 sing 414 n n C10 H15 UO4 sing 415 n n C11 H16 UO4 sing 416 n n C12 H17 UO4 sing 417 n n C13 H18 UO4 sing 418 n n C13 H19 UO4 sing 419 n n C16 H20 UO4 sing 420 n n C1C H21 UO4 sing 421 n n C1G H22 UO4 sing 422 n n C1G H23 UO4 sing 423 n n C1H H24 UO4 sing 424 n n C1H H25 UO4 sing 425 n n # _atom_sites.entry_id 6X4D _atom_sites.fract_transf_matrix[1][1] 0.006145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001085 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UO4 A 1 601 1 UO4 678 . D 4 SO4 A 1 602 1 SO4 SO4 . E 4 SO4 A 1 603 2 SO4 SO4 . F 5 HOH A 1 701 65 HOH HOH . F 5 HOH A 2 702 2 HOH HOH . F 5 HOH A 3 703 61 HOH HOH . F 5 HOH A 4 704 67 HOH HOH . F 5 HOH A 5 705 64 HOH HOH . F 5 HOH A 6 706 43 HOH HOH . F 5 HOH A 7 707 46 HOH HOH . F 5 HOH A 8 708 9 HOH HOH . F 5 HOH A 9 709 53 HOH HOH . F 5 HOH A 10 710 42 HOH HOH . F 5 HOH A 11 711 50 HOH HOH . F 5 HOH A 12 712 1 HOH HOH . F 5 HOH A 13 713 37 HOH HOH . F 5 HOH A 14 714 39 HOH HOH . F 5 HOH A 15 715 60 HOH HOH . F 5 HOH A 16 716 48 HOH HOH . F 5 HOH A 17 717 30 HOH HOH . F 5 HOH A 18 718 14 HOH HOH . F 5 HOH A 19 719 49 HOH HOH . F 5 HOH A 20 720 10 HOH HOH . F 5 HOH A 21 721 52 HOH HOH . F 5 HOH A 22 722 18 HOH HOH . F 5 HOH A 23 723 7 HOH HOH . F 5 HOH A 24 724 16 HOH HOH . F 5 HOH A 25 725 57 HOH HOH . F 5 HOH A 26 726 17 HOH HOH . F 5 HOH A 27 727 20 HOH HOH . F 5 HOH A 28 728 19 HOH HOH . F 5 HOH A 29 729 58 HOH HOH . F 5 HOH A 30 730 25 HOH HOH . F 5 HOH A 31 731 40 HOH HOH . F 5 HOH A 32 732 28 HOH HOH . F 5 HOH A 33 733 29 HOH HOH . F 5 HOH A 34 734 63 HOH HOH . F 5 HOH A 35 735 71 HOH HOH . F 5 HOH A 36 736 55 HOH HOH . F 5 HOH A 37 737 45 HOH HOH . F 5 HOH A 38 738 32 HOH HOH . G 5 HOH B 1 501 31 HOH HOH . G 5 HOH B 2 502 27 HOH HOH . G 5 HOH B 3 503 33 HOH HOH . G 5 HOH B 4 504 22 HOH HOH . G 5 HOH B 5 505 34 HOH HOH . G 5 HOH B 6 506 68 HOH HOH . G 5 HOH B 7 507 8 HOH HOH . G 5 HOH B 8 508 3 HOH HOH . G 5 HOH B 9 509 12 HOH HOH . G 5 HOH B 10 510 36 HOH HOH . G 5 HOH B 11 511 54 HOH HOH . G 5 HOH B 12 512 6 HOH HOH . G 5 HOH B 13 513 23 HOH HOH . G 5 HOH B 14 514 41 HOH HOH . G 5 HOH B 15 515 13 HOH HOH . G 5 HOH B 16 516 21 HOH HOH . G 5 HOH B 17 517 26 HOH HOH . G 5 HOH B 18 518 59 HOH HOH . G 5 HOH B 19 519 66 HOH HOH . G 5 HOH B 20 520 5 HOH HOH . G 5 HOH B 21 521 35 HOH HOH . G 5 HOH B 22 522 4 HOH HOH . G 5 HOH B 23 523 56 HOH HOH . G 5 HOH B 24 524 51 HOH HOH . G 5 HOH B 25 525 38 HOH HOH . G 5 HOH B 26 526 24 HOH HOH . G 5 HOH B 27 527 47 HOH HOH . G 5 HOH B 28 528 70 HOH HOH . G 5 HOH B 29 529 44 HOH HOH . G 5 HOH B 30 530 62 HOH HOH . G 5 HOH B 31 531 15 HOH HOH . G 5 HOH B 32 532 11 HOH HOH . G 5 HOH B 33 533 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C00 UO4 . . . C 3 523.537 -32.253 141.342 1 52 ? C00 UO4 601 A 1 HETATM 2 C C01 UO4 . . . C 3 524.597 -31.729 142.117 1 55.75 ? C01 UO4 601 A 1 HETATM 3 C C02 UO4 . . . C 3 524.595 -31.902 143.52 1 50.66 ? C02 UO4 601 A 1 HETATM 4 C C03 UO4 . . . C 3 523.539 -32.597 144.153 1 44.75 ? C03 UO4 601 A 1 HETATM 5 C C04 UO4 . . . C 3 522.474 -33.122 143.376 1 51.55 ? C04 UO4 601 A 1 HETATM 6 C C05 UO4 . . . C 3 522.465 -32.956 141.968 1 48.61 ? C05 UO4 601 A 1 HETATM 7 O O0A UO4 . . . C 3 521.431 -33.8 143.965 1 51.16 ? O0A UO4 601 A 1 HETATM 8 O O0B UO4 . . . C 3 521.392 -33.502 141.297 1 45.58 ? O0B UO4 601 A 1 HETATM 9 C C0C UO4 . . . C 3 520.313 -33.241 144.558 1 50.33 ? C0C UO4 601 A 1 HETATM 10 C C0D UO4 . . . C 3 521.331 -33.389 139.881 1 49.74 ? C0D UO4 601 A 1 HETATM 11 C C0E UO4 . . . C 3 520.081 -34.118 139.364 1 48.59 ? C0E UO4 601 A 1 HETATM 12 N N0H UO4 . . . C 3 519.899 -35.438 140.043 1 47.6 ? N0H UO4 601 A 1 HETATM 13 C C0K UO4 . . . C 3 520.698 -36.54 139.667 1 45.83 ? C0K UO4 601 A 1 HETATM 14 N N0M UO4 . . . C 3 520.466 -37.728 140.349 1 41.67 ? N0M UO4 601 A 1 HETATM 15 C C0N UO4 . . . C 3 519.517 -37.897 141.361 1 47.97 ? C0N UO4 601 A 1 HETATM 16 C C0O UO4 . . . C 3 518.733 -36.704 141.691 1 48.4 ? C0O UO4 601 A 1 HETATM 17 C C0P UO4 . . . C 3 518.938 -35.532 141.041 1 47.18 ? C0P UO4 601 A 1 HETATM 18 O O0Q UO4 . . . C 3 521.556 -36.481 138.788 1 44.7 ? O0Q UO4 601 A 1 HETATM 19 O O0S UO4 . . . C 3 519.392 -38.99 141.902 1 49.12 ? O0S UO4 601 A 1 HETATM 20 C C0V UO4 . . . C 3 519.652 -33.988 145.562 1 55.94 ? C0V UO4 601 A 1 HETATM 21 C C0W UO4 . . . C 3 518.492 -33.498 146.234 1 49.79 ? C0W UO4 601 A 1 HETATM 22 C C0X UO4 . . . C 3 517.975 -32.21 145.879 1 51.59 ? C0X UO4 601 A 1 HETATM 23 C C0Y UO4 . . . C 3 518.652 -31.447 144.864 1 55.56 ? C0Y UO4 601 A 1 HETATM 24 C C0Z UO4 . . . C 3 519.795 -31.978 144.22 1 47.81 ? C0Z UO4 601 A 1 HETATM 25 C C10 UO4 . . . C 3 520.265 -35.343 145.881 1 55.13 ? C10 UO4 601 A 1 HETATM 26 C C11 UO4 . . . C 3 517.812 -34.247 147.253 1 53.66 ? C11 UO4 601 A 1 HETATM 27 C C12 UO4 . . . C 3 516.809 -31.789 146.593 1 62.52 ? C12 UO4 601 A 1 HETATM 28 C C13 UO4 . . . C 3 518.233 -30.065 144.344 1 60.17 ? C13 UO4 601 A 1 HETATM 29 C C15 UO4 . . . C 3 516.67 -33.801 147.936 1 59.21 ? C15 UO4 601 A 1 HETATM 30 C C16 UO4 . . . C 3 516.174 -32.547 147.588 1 59.28 ? C16 UO4 601 A 1 HETATM 31 C C18 UO4 . . . C 3 516.022 -34.605 148.966 1 61.34 ? C18 UO4 601 A 1 HETATM 32 N N1B UO4 . . . C 3 515.508 -35.244 149.784 1 66.19 ? N1B UO4 601 A 1 HETATM 33 C C1C UO4 . . . C 3 518.132 -28.899 145.323 1 60.1 ? C1C UO4 601 A 1 HETATM 34 C C1G UO4 . . . C 3 519.096 -28.738 146.478 1 60.32 ? C1G UO4 601 A 1 HETATM 35 C C1H UO4 . . . C 3 519.225 -27.84 145.265 1 56.09 ? C1H UO4 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #