data_6X4E
#
_model_server_result.job_id            s7xD9xKM8ANqCqPV3Vx75g 
_model_server_result.datetime_utc      '2024-11-16 11:03:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x4e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    6X4E 
#
_exptl.entry_id    6X4E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              485.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl (6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)acetate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.92 
_cell.angle_gamma         90 
_cell.entry_id            6X4E 
_cell.length_a            162.73 
_cell.length_b            74.08 
_cell.length_c            108.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X4E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H23 N3 O6' 
_chem_comp.formula_weight    485.488 
_chem_comp.id                UMV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl (6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)acetate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C9 UMV doub 362 n n 
C8 C7 UMV sing 363 n n 
C8 N1 UMV sing 364 n n 
C9 N1 UMV sing 365 n n 
C9 N2 UMV sing 366 n n 
C7 O2 UMV sing 367 n n 
N1 C12 UMV sing 368 n n 
N2 C10 UMV sing 369 n n 
C12 C11 UMV doub 370 n n 
O2 C2 UMV sing 371 n n 
C1 C2 UMV doub 372 n y 
C1 C6 UMV sing 373 n y 
C10 C11 UMV sing 374 n n 
C10 O4 UMV doub 375 n n 
C2 C3 UMV sing 376 n y 
C6 C5 UMV doub 377 n y 
C3 O1 UMV sing 378 n n 
C3 C4 UMV doub 379 n y 
C5 C4 UMV sing 380 n y 
O1 C13 UMV sing 381 n n 
C18 C13 UMV doub 382 n y 
C18 C17 UMV sing 383 n y 
C25 C17 UMV sing 384 n n 
C25 C26 UMV sing 385 n n 
C13 C14 UMV sing 386 n y 
C17 C16 UMV doub 387 n y 
C14 C24 UMV sing 388 n n 
C14 C15 UMV doub 389 n y 
C26 O6 UMV doub 390 n n 
C26 O5 UMV sing 391 n n 
C16 C15 UMV sing 392 n y 
C16 C22 UMV sing 393 n y 
C15 C19 UMV sing 394 n y 
O5 C27 UMV sing 395 n n 
C22 C21 UMV doub 396 n y 
C19 C20 UMV doub 397 n y 
C21 C20 UMV sing 398 n y 
C20 C23 UMV sing 399 n n 
C23 N3 UMV trip 400 n n 
C1 H1 UMV sing 401 n n 
N2 H2 UMV sing 402 n n 
C4 H3 UMV sing 403 n n 
C5 H4 UMV sing 404 n n 
C6 H5 UMV sing 405 n n 
C7 H6 UMV sing 406 n n 
C7 H7 UMV sing 407 n n 
C8 H8 UMV sing 408 n n 
C8 H9 UMV sing 409 n n 
C11 H10 UMV sing 410 n n 
C12 H11 UMV sing 411 n n 
C18 H12 UMV sing 412 n n 
C19 H13 UMV sing 413 n n 
C21 H14 UMV sing 414 n n 
C22 H15 UMV sing 415 n n 
C24 H16 UMV sing 416 n n 
C24 H17 UMV sing 417 n n 
C24 H18 UMV sing 418 n n 
C25 H19 UMV sing 419 n n 
C25 H20 UMV sing 420 n n 
C27 H21 UMV sing 421 n n 
C27 H22 UMV sing 422 n n 
C27 H23 UMV sing 423 n n 
#
_atom_sites.entry_id                     6X4E 
_atom_sites.fract_transf_matrix[1][1]    0.006145 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001075 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 UMV A 1 601 1 UMV 681 . 
D 4 SO4 A 1 602 1 SO4 SO4 . 
E 4 SO4 A 1 603 2 SO4 SO4 . 
F 4 SO4 A 1 604 3 SO4 SO4 . 
G 5 HOH A 1 701 7 HOH HOH . 
G 5 HOH A 2 702 23 HOH HOH . 
G 5 HOH A 3 703 10 HOH HOH . 
G 5 HOH A 4 704 6 HOH HOH . 
G 5 HOH A 5 705 1 HOH HOH . 
G 5 HOH A 6 706 8 HOH HOH . 
G 5 HOH A 7 707 11 HOH HOH . 
G 5 HOH A 8 708 27 HOH HOH . 
G 5 HOH A 9 709 3 HOH HOH . 
G 5 HOH A 10 710 19 HOH HOH . 
G 5 HOH A 11 711 15 HOH HOH . 
G 5 HOH A 12 712 24 HOH HOH . 
H 5 HOH B 1 501 13 HOH HOH . 
H 5 HOH B 2 502 21 HOH HOH . 
H 5 HOH B 3 503 12 HOH HOH . 
H 5 HOH B 4 504 4 HOH HOH . 
H 5 HOH B 5 505 25 HOH HOH . 
H 5 HOH B 6 506 5 HOH HOH . 
H 5 HOH B 7 507 16 HOH HOH . 
H 5 HOH B 8 508 17 HOH HOH . 
H 5 HOH B 9 509 2 HOH HOH . 
H 5 HOH B 10 510 22 HOH HOH . 
H 5 HOH B 11 511 9 HOH HOH . 
H 5 HOH B 12 512 20 HOH HOH . 
H 5 HOH B 13 513 14 HOH HOH . 
H 5 HOH B 14 514 18 HOH HOH . 
H 5 HOH B 15 515 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UMV . . . C 3 523.63 -36.255 141.107 1 44.44 ? C1 UMV 601 A 1 
HETATM 2 O O1 UMV . . . C 3 521.633 -38.023 143.657 1 45.76 ? O1 UMV 601 A 1 
HETATM 3 C C2 UMV . . . C 3 522.603 -37.004 141.716 1 42.68 ? C2 UMV 601 A 1 
HETATM 4 N N1 UMV . . . C 3 520.2 -39.515 139.721 1 44.25 ? N1 UMV 601 A 1 
HETATM 5 O O2 UMV . . . C 3 521.52 -37.465 140.993 1 43.3 ? O2 UMV 601 A 1 
HETATM 6 N N2 UMV . . . C 3 520.649 -41.82 140.016 1 44.32 ? N2 UMV 601 A 1 
HETATM 7 C C3 UMV . . . C 3 522.658 -37.285 143.092 1 44.62 ? C3 UMV 601 A 1 
HETATM 8 C C4 UMV . . . C 3 523.754 -36.83 143.86 1 38.71 ? C4 UMV 601 A 1 
HETATM 9 C C5 UMV . . . C 3 524.783 -36.082 143.248 1 42.66 ? C5 UMV 601 A 1 
HETATM 10 C C6 UMV . . . C 3 524.721 -35.794 141.871 1 46.16 ? C6 UMV 601 A 1 
HETATM 11 C C7 UMV . . . C 3 521.696 -37.622 139.632 1 46.46 ? C7 UMV 601 A 1 
HETATM 12 C C8 UMV . . . C 3 520.49 -38.273 139.011 1 47.22 ? C8 UMV 601 A 1 
HETATM 13 C C9 UMV . . . C 3 520.919 -40.642 139.336 1 43.33 ? C9 UMV 601 A 1 
HETATM 14 C C10 UMV . . . C 3 519.721 -41.957 141.047 1 46.02 ? C10 UMV 601 A 1 
HETATM 15 C C11 UMV . . . C 3 519.004 -40.733 141.398 1 44.56 ? C11 UMV 601 A 1 
HETATM 16 C C12 UMV . . . C 3 519.267 -39.582 140.734 1 43.91 ? C12 UMV 601 A 1 
HETATM 17 C C13 UMV . . . C 3 520.544 -37.359 144.199 1 45.53 ? C13 UMV 601 A 1 
HETATM 18 C C14 UMV . . . C 3 519.832 -37.972 145.238 1 50.13 ? C14 UMV 601 A 1 
HETATM 19 C C15 UMV . . . C 3 518.723 -37.351 145.823 1 45.3 ? C15 UMV 601 A 1 
HETATM 20 C C16 UMV . . . C 3 518.273 -36.085 145.39 1 50.76 ? C16 UMV 601 A 1 
HETATM 21 C C17 UMV . . . C 3 518.985 -35.439 144.344 1 55.22 ? C17 UMV 601 A 1 
HETATM 22 C C18 UMV . . . C 3 520.105 -36.093 143.756 1 44.43 ? C18 UMV 601 A 1 
HETATM 23 C C19 UMV . . . C 3 518.069 -38.04 146.863 1 50.08 ? C19 UMV 601 A 1 
HETATM 24 C C20 UMV . . . C 3 516.949 -37.505 147.514 1 55.33 ? C20 UMV 601 A 1 
HETATM 25 C C21 UMV . . . C 3 516.494 -36.241 147.091 1 56.79 ? C21 UMV 601 A 1 
HETATM 26 C C22 UMV . . . C 3 517.141 -35.545 146.044 1 58.72 ? C22 UMV 601 A 1 
HETATM 27 O O3 UMV . . . C 3 521.747 -40.585 138.438 1 45.27 ? O3 UMV 601 A 1 
HETATM 28 O O4 UMV . . . C 3 519.564 -43.051 141.578 1 48.19 ? O4 UMV 601 A 1 
HETATM 29 C C23 UMV . . . C 3 516.277 -38.282 148.628 1 58.17 ? C23 UMV 601 A 1 
HETATM 30 N N3 UMV . . . C 3 515.764 -38.883 149.483 1 58.59 ? N3 UMV 601 A 1 
HETATM 31 C C24 UMV . . . C 3 520.238 -39.312 145.763 1 52.58 ? C24 UMV 601 A 1 
HETATM 32 C C25 UMV . . . C 3 518.574 -34.086 143.8 1 55.93 ? C25 UMV 601 A 1 
HETATM 33 C C26 UMV . . . C 3 518.327 -32.996 144.817 1 63.29 ? C26 UMV 601 A 1 
HETATM 34 O O5 UMV . . . C 3 519.486 -32.501 145.319 1 67.9 ? O5 UMV 601 A 1 
HETATM 35 C C27 UMV . . . C 3 519.236 -32.11 146.623 1 64.99 ? C27 UMV 601 A 1 
HETATM 36 O O6 UMV . . . C 3 517.237 -32.568 145.183 1 66.88 ? O6 UMV 601 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           36 
#