data_6X4F # _model_server_result.job_id bIiSI8AzvRA1ps68yWxulw _model_server_result.datetime_utc '2024-11-01 04:24:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6X4F # _exptl.entry_id 6X4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.01 _cell.angle_gamma 90 _cell.entry_id 6X4F _cell.length_a 162 _cell.length_b 73.71 _cell.length_c 108.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H23 N3 O6' _chem_comp.formula_weight 485.488 _chem_comp.id UMV _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C9 UMV doub 362 n n C8 C7 UMV sing 363 n n C8 N1 UMV sing 364 n n C9 N1 UMV sing 365 n n C9 N2 UMV sing 366 n n C7 O2 UMV sing 367 n n N1 C12 UMV sing 368 n n N2 C10 UMV sing 369 n n C12 C11 UMV doub 370 n n O2 C2 UMV sing 371 n n C1 C2 UMV doub 372 n y C1 C6 UMV sing 373 n y C10 C11 UMV sing 374 n n C10 O4 UMV doub 375 n n C2 C3 UMV sing 376 n y C6 C5 UMV doub 377 n y C3 O1 UMV sing 378 n n C3 C4 UMV doub 379 n y C5 C4 UMV sing 380 n y O1 C13 UMV sing 381 n n C18 C13 UMV doub 382 n y C18 C17 UMV sing 383 n y C25 C17 UMV sing 384 n n C25 C26 UMV sing 385 n n C13 C14 UMV sing 386 n y C17 C16 UMV doub 387 n y C14 C24 UMV sing 388 n n C14 C15 UMV doub 389 n y C26 O6 UMV doub 390 n n C26 O5 UMV sing 391 n n C16 C15 UMV sing 392 n y C16 C22 UMV sing 393 n y C15 C19 UMV sing 394 n y O5 C27 UMV sing 395 n n C22 C21 UMV doub 396 n y C19 C20 UMV doub 397 n y C21 C20 UMV sing 398 n y C20 C23 UMV sing 399 n n C23 N3 UMV trip 400 n n C1 H1 UMV sing 401 n n N2 H2 UMV sing 402 n n C4 H3 UMV sing 403 n n C5 H4 UMV sing 404 n n C6 H5 UMV sing 405 n n C7 H6 UMV sing 406 n n C7 H7 UMV sing 407 n n C8 H8 UMV sing 408 n n C8 H9 UMV sing 409 n n C11 H10 UMV sing 410 n n C12 H11 UMV sing 411 n n C18 H12 UMV sing 412 n n C19 H13 UMV sing 413 n n C21 H14 UMV sing 414 n n C22 H15 UMV sing 415 n n C24 H16 UMV sing 416 n n C24 H17 UMV sing 417 n n C24 H18 UMV sing 418 n n C25 H19 UMV sing 419 n n C25 H20 UMV sing 420 n n C27 H21 UMV sing 421 n n C27 H22 UMV sing 422 n n C27 H23 UMV sing 423 n n # _atom_sites.entry_id 6X4F _atom_sites.fract_transf_matrix[1][1] 0.006173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00109 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UMV A 1 601 1 UMV 681 . D 4 SO4 A 1 602 1 SO4 SO4 . E 5 HOH A 1 701 22 HOH HOH . E 5 HOH A 2 702 33 HOH HOH . E 5 HOH A 3 703 43 HOH HOH . E 5 HOH A 4 704 32 HOH HOH . E 5 HOH A 5 705 12 HOH HOH . E 5 HOH A 6 706 8 HOH HOH . E 5 HOH A 7 707 46 HOH HOH . E 5 HOH A 8 708 50 HOH HOH . E 5 HOH A 9 709 38 HOH HOH . E 5 HOH A 10 710 42 HOH HOH . E 5 HOH A 11 711 37 HOH HOH . E 5 HOH A 12 712 13 HOH HOH . E 5 HOH A 13 713 31 HOH HOH . E 5 HOH A 14 714 4 HOH HOH . E 5 HOH A 15 715 17 HOH HOH . E 5 HOH A 16 716 11 HOH HOH . E 5 HOH A 17 717 39 HOH HOH . E 5 HOH A 18 718 7 HOH HOH . E 5 HOH A 19 719 23 HOH HOH . E 5 HOH A 20 720 35 HOH HOH . E 5 HOH A 21 721 30 HOH HOH . E 5 HOH A 22 722 40 HOH HOH . E 5 HOH A 23 723 51 HOH HOH . E 5 HOH A 24 724 44 HOH HOH . E 5 HOH A 25 725 52 HOH HOH . E 5 HOH A 26 726 24 HOH HOH . E 5 HOH A 27 727 2 HOH HOH . F 5 HOH B 1 501 26 HOH HOH . F 5 HOH B 2 502 36 HOH HOH . F 5 HOH B 3 503 34 HOH HOH . F 5 HOH B 4 504 27 HOH HOH . F 5 HOH B 5 505 6 HOH HOH . F 5 HOH B 6 506 10 HOH HOH . F 5 HOH B 7 507 19 HOH HOH . F 5 HOH B 8 508 14 HOH HOH . F 5 HOH B 9 509 5 HOH HOH . F 5 HOH B 10 510 9 HOH HOH . F 5 HOH B 11 511 20 HOH HOH . F 5 HOH B 12 512 3 HOH HOH . F 5 HOH B 13 513 28 HOH HOH . F 5 HOH B 14 514 21 HOH HOH . F 5 HOH B 15 515 29 HOH HOH . F 5 HOH B 16 516 48 HOH HOH . F 5 HOH B 17 517 16 HOH HOH . F 5 HOH B 18 518 49 HOH HOH . F 5 HOH B 19 519 18 HOH HOH . F 5 HOH B 20 520 25 HOH HOH . F 5 HOH B 21 521 15 HOH HOH . F 5 HOH B 22 522 1 HOH HOH . F 5 HOH B 23 523 41 HOH HOH . F 5 HOH B 24 524 45 HOH HOH . F 5 HOH B 25 525 47 HOH HOH . F 5 HOH B 26 526 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UMV . . . C 3 844.899 -24.757 141.046 1 55.26 ? C1 UMV 601 A 1 HETATM 2 O O1 UMV . . . C 3 842.794 -26.288 143.658 1 60.92 ? O1 UMV 601 A 1 HETATM 3 C C2 UMV . . . C 3 843.836 -25.427 141.686 1 52.14 ? C2 UMV 601 A 1 HETATM 4 N N1 UMV . . . C 3 841.47 -28.08 139.834 1 50.17 ? N1 UMV 601 A 1 HETATM 5 O O2 UMV . . . C 3 842.743 -25.893 140.984 1 57.44 ? O2 UMV 601 A 1 HETATM 6 N N2 UMV . . . C 3 841.965 -30.363 140.208 1 47.14 ? N2 UMV 601 A 1 HETATM 7 C C3 UMV . . . C 3 843.862 -25.632 143.072 1 54.5 ? C3 UMV 601 A 1 HETATM 8 C C4 UMV . . . C 3 844.957 -25.166 143.829 1 55.1 ? C4 UMV 601 A 1 HETATM 9 C C5 UMV . . . C 3 846.023 -24.497 143.19 1 55.09 ? C5 UMV 601 A 1 HETATM 10 C C6 UMV . . . C 3 845.997 -24.29 141.796 1 59.18 ? C6 UMV 601 A 1 HETATM 11 C C7 UMV . . . C 3 842.932 -26.168 139.645 1 56.63 ? C7 UMV 601 A 1 HETATM 12 C C8 UMV . . . C 3 841.721 -26.856 139.077 1 55.31 ? C8 UMV 601 A 1 HETATM 13 C C9 UMV . . . C 3 842.202 -29.207 139.478 1 48.3 ? C9 UMV 601 A 1 HETATM 14 C C10 UMV . . . C 3 841.059 -30.474 141.262 1 54.14 ? C10 UMV 601 A 1 HETATM 15 C C11 UMV . . . C 3 840.326 -29.252 141.582 1 50.62 ? C11 UMV 601 A 1 HETATM 16 C C12 UMV . . . C 3 840.56 -28.126 140.868 1 49.58 ? C12 UMV 601 A 1 HETATM 17 C C13 UMV . . . C 3 841.74 -25.669 144.306 1 57.84 ? C13 UMV 601 A 1 HETATM 18 C C14 UMV . . . C 3 840.979 -26.351 145.265 1 63.08 ? C14 UMV 601 A 1 HETATM 19 C C15 UMV . . . C 3 839.914 -25.719 145.923 1 62.83 ? C15 UMV 601 A 1 HETATM 20 C C16 UMV . . . C 3 839.572 -24.377 145.645 1 65.01 ? C16 UMV 601 A 1 HETATM 21 C C17 UMV . . . C 3 840.342 -23.668 144.685 1 64.9 ? C17 UMV 601 A 1 HETATM 22 C C18 UMV . . . C 3 841.407 -24.331 144.026 1 58.15 ? C18 UMV 601 A 1 HETATM 23 C C19 UMV . . . C 3 839.191 -26.466 146.875 1 63.25 ? C19 UMV 601 A 1 HETATM 24 C C20 UMV . . . C 3 838.11 -25.92 147.586 1 65.27 ? C20 UMV 601 A 1 HETATM 25 C C21 UMV . . . C 3 837.762 -24.585 147.318 1 68.68 ? C21 UMV 601 A 1 HETATM 26 C C22 UMV . . . C 3 838.479 -23.832 146.361 1 71.19 ? C22 UMV 601 A 1 HETATM 27 O O3 UMV . . . C 3 843.011 -29.172 138.564 1 48.05 ? O3 UMV 601 A 1 HETATM 28 O O4 UMV . . . C 3 840.931 -31.548 141.837 1 56.27 ? O4 UMV 601 A 1 HETATM 29 C C23 UMV . . . C 3 837.356 -26.752 148.599 1 68.19 ? C23 UMV 601 A 1 HETATM 30 N N3 UMV . . . C 3 836.781 -27.397 149.377 1 72.72 ? N3 UMV 601 A 1 HETATM 31 C C24 UMV . . . C 3 841.273 -27.772 145.613 1 65.42 ? C24 UMV 601 A 1 HETATM 32 C C25 UMV . . . C 3 840.079 -22.235 144.277 1 68.63 ? C25 UMV 601 A 1 HETATM 33 C C26 UMV . . . C 3 839.712 -21.254 145.362 1 77.31 ? C26 UMV 601 A 1 HETATM 34 O O5 UMV . . . C 3 840.772 -21.01 146.175 1 73.27 ? O5 UMV 601 A 1 HETATM 35 C C27 UMV . . . C 3 840.715 -19.697 146.607 1 71.92 ? C27 UMV 601 A 1 HETATM 36 O O6 UMV . . . C 3 838.62 -20.718 145.525 1 80.73 ? O6 UMV 601 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #