data_6X4H # _model_server_result.job_id kjc3edhYltrpFT5uPKe2BA _model_server_result.datetime_utc '2024-10-20 03:28:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":805}' # _entry.id 6X4H # _exptl.entry_id 6X4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.389 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methyl-N-(6-phenoxypyridine-3-carbonyl)-L-leucine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127 _cell.angle_gamma 90 _cell.entry_id 6X4H _cell.length_a 161.458 _cell.length_b 79.444 _cell.length_c 111.545 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 801 NAG 2 n B NAG 2 B 2 NAG A 802 NAG 2 n C NAG 1 C 1 NAG A 901 NAG 2 n C NAG 2 C 2 NAG A 902 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 363 A CYS 415 1_555 A SG CYS 373 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? disulf ? disulf2 A SG CYS 527 A CYS 579 1_555 A SG CYS 566 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? disulf ? disulf3 A SG CYS 549 A CYS 601 1_555 A SG CYS 581 A CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? disulf ? disulf4 A SG CYS 583 A CYS 635 1_555 A SG CYS 638 A CYS 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? covale ? covale1 A ND2 ASN 321 A ASN 373 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 497 A ASN 549 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C19 H22 N2 O4' _chem_comp.formula_weight 342.389 _chem_comp.id UOY _chem_comp.mon_nstd_flag . _chem_comp.name 4-methyl-N-(6-phenoxypyridine-3-carbonyl)-L-leucine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C15 UOY sing 401 n n O3 C UOY doub 402 n n C14 C15 UOY sing 403 n n C14 C1 UOY sing 404 n n O2 C UOY sing 405 n n C C1 UOY sing 406 n n C15 C16 UOY sing 407 n n C15 C17 UOY sing 408 n n C1 N UOY sing 409 n n N C2 UOY sing 410 n n C2 O1 UOY doub 411 n n C2 C3 UOY sing 412 n n C3 C13 UOY doub 413 n y C3 C4 UOY sing 414 n y C13 N1 UOY sing 415 n y N1 C6 UOY doub 416 n y C4 C5 UOY doub 417 n y C6 C5 UOY sing 418 n y C6 O UOY sing 419 n n C8 C9 UOY doub 420 n y C8 C7 UOY sing 421 n y O C7 UOY sing 422 n n C9 C10 UOY sing 423 n y C7 C12 UOY doub 424 n y C10 C11 UOY doub 425 n y C12 C11 UOY sing 426 n y C5 H1 UOY sing 427 n n C9 H2 UOY sing 428 n n C10 H3 UOY sing 429 n n C11 H4 UOY sing 430 n n C12 H5 UOY sing 431 n n C13 H6 UOY sing 432 n n C18 H7 UOY sing 433 n n C18 H8 UOY sing 434 n n C18 H9 UOY sing 435 n n O2 H10 UOY sing 436 n n C1 H11 UOY sing 437 n n C14 H12 UOY sing 438 n n C14 H13 UOY sing 439 n n C17 H14 UOY sing 440 n n C17 H15 UOY sing 441 n n C17 H16 UOY sing 442 n n C16 H17 UOY sing 443 n n C16 H18 UOY sing 444 n n C16 H19 UOY sing 445 n n N H20 UOY sing 446 n n C4 H21 UOY sing 447 n n C8 H22 UOY sing 448 n n # _atom_sites.entry_id 6X4H _atom_sites.fract_transf_matrix[1][1] 0.006194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004667 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 UOY A 1 805 1 UOY MRK . E 4 GOL A 1 806 1 GOL GOL . F 5 HOH A 1 901 4 HOH HOH . F 5 HOH A 2 902 2 HOH HOH . F 5 HOH A 3 903 7 HOH HOH . F 5 HOH A 4 904 1 HOH HOH . F 5 HOH A 5 905 10 HOH HOH . F 5 HOH A 6 906 3 HOH HOH . F 5 HOH A 7 907 5 HOH HOH . F 5 HOH A 8 908 8 HOH HOH . F 5 HOH A 9 909 9 HOH HOH . F 5 HOH A 10 910 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UOY . . . D 3 -33.169 39.427 16.05 1 82.79 ? C2 UOY 805 A 1 HETATM 2 C C3 UOY . . . D 3 -33.211 38.039 16.613 1 75.77 ? C3 UOY 805 A 1 HETATM 3 C C5 UOY . . . D 3 -34.586 36.347 17.635 1 70.13 ? C5 UOY 805 A 1 HETATM 4 C C7 UOY . . . D 3 -34.865 33.801 18.619 1 74.05 ? C7 UOY 805 A 1 HETATM 5 C C9 UOY . . . D 3 -37.127 33.033 18.419 1 67.75 ? C9 UOY 805 A 1 HETATM 6 C C10 UOY . . . D 3 -37.271 33.098 19.788 1 70.53 ? C10 UOY 805 A 1 HETATM 7 C C11 UOY . . . D 3 -36.211 33.498 20.582 1 72.8 ? C11 UOY 805 A 1 HETATM 8 C C12 UOY . . . D 3 -34.998 33.849 20.006 1 75.41 ? C12 UOY 805 A 1 HETATM 9 C C13 UOY . . . D 3 -32.156 37.133 16.643 1 71.98 ? C13 UOY 805 A 1 HETATM 10 C C15 UOY . . . D 3 -29.747 41.223 13.737 1 82.01 ? C15 UOY 805 A 1 HETATM 11 C C18 UOY . . . D 3 -28.917 41.701 12.578 1 81.73 ? C18 UOY 805 A 1 HETATM 12 O O3 UOY . . . D 3 -33.965 42.077 12.921 1 81.36 ? O3 UOY 805 A 1 HETATM 13 C C UOY . . . D 3 -33.673 40.978 13.456 1 81.47 ? C UOY 805 A 1 HETATM 14 O O2 UOY . . . D 3 -34.394 39.946 13.433 1 81.77 -1 O2 UOY 805 A 1 HETATM 15 C C1 UOY . . . D 3 -32.335 40.883 14.222 1 81.17 ? C1 UOY 805 A 1 HETATM 16 C C14 UOY . . . D 3 -31.167 40.889 13.231 1 81.09 ? C14 UOY 805 A 1 HETATM 17 C C17 UOY . . . D 3 -29.752 42.328 14.765 1 82.87 ? C17 UOY 805 A 1 HETATM 18 C C16 UOY . . . D 3 -29.056 39.997 14.325 1 82.39 ? C16 UOY 805 A 1 HETATM 19 N N UOY . . . D 3 -32.294 39.667 15.052 1 82.9 ? N UOY 805 A 1 HETATM 20 O O1 UOY . . . D 3 -33.949 40.296 16.469 1 87.38 ? O1 UOY 805 A 1 HETATM 21 N N1 UOY . . . D 3 -32.27 35.868 17.125 1 71.86 ? N1 UOY 805 A 1 HETATM 22 C C6 UOY . . . D 3 -33.469 35.508 17.591 1 71.78 ? C6 UOY 805 A 1 HETATM 23 C C4 UOY . . . D 3 -34.434 37.619 17.133 1 73.71 ? C4 UOY 805 A 1 HETATM 24 O O UOY . . . D 3 -33.66 34.221 18.012 1 74.44 ? O UOY 805 A 1 HETATM 25 C C8 UOY . . . D 3 -35.926 33.379 17.827 1 70.62 ? C8 UOY 805 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #