data_6X4J
#
_model_server_result.job_id            7nlDmIfxbv4WXJORRsKAng 
_model_server_result.datetime_utc      '2025-07-19 17:22:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6X4J 
#
_exptl.entry_id    6X4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6X4J 
_cell.length_a            98.428 
_cell.length_b            98.428 
_cell.length_c            68.922 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -45.948 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MG MG . A MG 401 1_555 C O3G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc2 B MG MG . A MG 401 1_555 C O1B ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc3 B MG MG . A MG 401 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc4 B MG MG . A MG 401 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc5 B MG MG . A MG 401 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc6 B MG MG . A MG 401 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     6X4J 
_atom_sites.fract_transf_matrix[1][1]    0.01016 
_atom_sites.fract_transf_matrix[1][2]    0.005866 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011731 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014509 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 1 MG MG . 
C 3 ANP A 1 402 501 ANP ANP . 
D 4 UOM A 1 403 1 UOM Y84 . 
E 5 EDO A 1 404 1 EDO EDO . 
F 6 HOH A 1 501 2 HOH HOH . 
F 6 HOH A 2 502 1 HOH HOH . 
F 6 HOH A 3 503 78 HOH HOH . 
F 6 HOH A 4 504 81 HOH HOH . 
F 6 HOH A 5 505 27 HOH HOH . 
F 6 HOH A 6 506 83 HOH HOH . 
F 6 HOH A 7 507 57 HOH HOH . 
F 6 HOH A 8 508 197 HOH HOH . 
F 6 HOH A 9 509 183 HOH HOH . 
F 6 HOH A 10 510 125 HOH HOH . 
F 6 HOH A 11 511 19 HOH HOH . 
F 6 HOH A 12 512 61 HOH HOH . 
F 6 HOH A 13 513 5 HOH HOH . 
F 6 HOH A 14 514 198 HOH HOH . 
F 6 HOH A 15 515 3 HOH HOH . 
F 6 HOH A 16 516 28 HOH HOH . 
F 6 HOH A 17 517 189 HOH HOH . 
F 6 HOH A 18 518 10 HOH HOH . 
F 6 HOH A 19 519 17 HOH HOH . 
F 6 HOH A 20 520 58 HOH HOH . 
F 6 HOH A 21 521 178 HOH HOH . 
F 6 HOH A 22 522 182 HOH HOH . 
F 6 HOH A 23 523 155 HOH HOH . 
F 6 HOH A 24 524 79 HOH HOH . 
F 6 HOH A 25 525 94 HOH HOH . 
F 6 HOH A 26 526 4 HOH HOH . 
F 6 HOH A 27 527 20 HOH HOH . 
F 6 HOH A 28 528 185 HOH HOH . 
F 6 HOH A 29 529 180 HOH HOH . 
F 6 HOH A 30 530 39 HOH HOH . 
F 6 HOH A 31 531 184 HOH HOH . 
F 6 HOH A 32 532 190 HOH HOH . 
F 6 HOH A 33 533 179 HOH HOH . 
F 6 HOH A 34 534 176 HOH HOH . 
F 6 HOH A 35 535 194 HOH HOH . 
F 6 HOH A 36 536 29 HOH HOH . 
F 6 HOH A 37 537 186 HOH HOH . 
F 6 HOH A 38 538 75 HOH HOH . 
F 6 HOH A 39 539 164 HOH HOH . 
F 6 HOH A 40 540 191 HOH HOH . 
F 6 HOH A 41 541 15 HOH HOH . 
F 6 HOH A 42 542 37 HOH HOH . 
F 6 HOH A 43 543 193 HOH HOH . 
F 6 HOH A 44 544 175 HOH HOH . 
F 6 HOH A 45 545 41 HOH HOH . 
F 6 HOH A 46 546 166 HOH HOH . 
F 6 HOH A 47 547 173 HOH HOH . 
F 6 HOH A 48 548 153 HOH HOH . 
F 6 HOH A 49 549 85 HOH HOH . 
F 6 HOH A 50 550 147 HOH HOH . 
F 6 HOH A 51 551 6 HOH HOH . 
F 6 HOH A 52 552 168 HOH HOH . 
F 6 HOH A 53 553 132 HOH HOH . 
F 6 HOH A 54 554 163 HOH HOH . 
F 6 HOH A 55 555 32 HOH HOH . 
F 6 HOH A 56 556 165 HOH HOH . 
F 6 HOH A 57 557 172 HOH HOH . 
F 6 HOH A 58 558 199 HOH HOH . 
F 6 HOH A 59 559 195 HOH HOH . 
F 6 HOH A 60 560 93 HOH HOH . 
F 6 HOH A 61 561 16 HOH HOH . 
F 6 HOH A 62 562 77 HOH HOH . 
F 6 HOH A 63 563 192 HOH HOH . 
F 6 HOH A 64 564 188 HOH HOH . 
F 6 HOH A 65 565 82 HOH HOH . 
F 6 HOH A 66 566 196 HOH HOH . 
F 6 HOH A 67 567 187 HOH HOH . 
F 6 HOH A 68 568 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 26.569 -17.542 -13.218 1 44.1 ? PG ANP 402 A 1 
HETATM 2 O O1G ANP . . . C 3 25.953 -18.316 -14.347 1 44.41 ? O1G ANP 402 A 1 
HETATM 3 O O2G ANP . . . C 3 27.717 -16.638 -13.805 1 43.06 ? O2G ANP 402 A 1 
HETATM 4 O O3G ANP . . . C 3 27.183 -18.574 -12.188 1 48.14 ? O3G ANP 402 A 1 
HETATM 5 P PB ANP . . . C 3 25.298 -16.582 -10.828 1 38.93 ? PB ANP 402 A 1 
HETATM 6 O O1B ANP . . . C 3 26.521 -17.23 -10.262 1 41.68 ? O1B ANP 402 A 1 
HETATM 7 O O2B ANP . . . C 3 25.181 -15.126 -10.292 1 37.44 ? O2B ANP 402 A 1 
HETATM 8 N N3B ANP . . . C 3 25.388 -16.546 -12.506 1 41.55 ? N3B ANP 402 A 1 
HETATM 9 P PA ANP . . . C 3 23.502 -17.735 -8.998 1 32.66 ? PA ANP 402 A 1 
HETATM 10 O O1A ANP . . . C 3 23.956 -16.754 -7.985 1 32.47 ? O1A ANP 402 A 1 
HETATM 11 O O2A ANP . . . C 3 23.873 -19.191 -8.697 1 30.26 ? O2A ANP 402 A 1 
HETATM 12 O O3A ANP . . . C 3 24.02 -17.392 -10.464 1 35.63 ? O3A ANP 402 A 1 
HETATM 13 O O5' ANP . . . C 3 21.942 -17.593 -9.162 1 30.68 ? O5' ANP 402 A 1 
HETATM 14 C C5' ANP . . . C 3 21.374 -16.596 -10.034 1 29.45 ? C5' ANP 402 A 1 
HETATM 15 C C4' ANP . . . C 3 19.88 -16.793 -10.088 1 28.55 ? C4' ANP 402 A 1 
HETATM 16 O O4' ANP . . . C 3 19.352 -16.877 -8.753 1 28.48 ? O4' ANP 402 A 1 
HETATM 17 C C3' ANP . . . C 3 19.104 -15.662 -10.748 1 28.1 ? C3' ANP 402 A 1 
HETATM 18 O O3' ANP . . . C 3 19.043 -15.872 -12.153 1 27.47 ? O3' ANP 402 A 1 
HETATM 19 C C2' ANP . . . C 3 17.719 -15.778 -10.103 1 28.9 ? C2' ANP 402 A 1 
HETATM 20 O O2' ANP . . . C 3 16.874 -16.643 -10.847 1 28.72 ? O2' ANP 402 A 1 
HETATM 21 C C1' ANP . . . C 3 18.033 -16.363 -8.718 1 29.32 ? C1' ANP 402 A 1 
HETATM 22 N N9 ANP . . . C 3 17.934 -15.429 -7.596 1 30.34 ? N9 ANP 402 A 1 
HETATM 23 C C8 ANP . . . C 3 17.612 -15.761 -6.305 1 32.16 ? C8 ANP 402 A 1 
HETATM 24 N N7 ANP . . . C 3 17.61 -14.747 -5.475 1 31.91 ? N7 ANP 402 A 1 
HETATM 25 C C5 ANP . . . C 3 17.96 -13.67 -6.272 1 31.73 ? C5 ANP 402 A 1 
HETATM 26 C C6 ANP . . . C 3 18.135 -12.299 -5.992 1 32.02 ? C6 ANP 402 A 1 
HETATM 27 N N6 ANP . . . C 3 17.968 -11.764 -4.78 1 32.56 ? N6 ANP 402 A 1 
HETATM 28 N N1 ANP . . . C 3 18.492 -11.489 -7.012 1 32.91 ? N1 ANP 402 A 1 
HETATM 29 C C2 ANP . . . C 3 18.659 -12.021 -8.226 1 32.56 ? C2 ANP 402 A 1 
HETATM 30 N N3 ANP . . . C 3 18.524 -13.292 -8.61 1 32.43 ? N3 ANP 402 A 1 
HETATM 31 C C4 ANP . . . C 3 18.171 -14.071 -7.58 1 31.46 ? C4 ANP 402 A 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#