data_6X4J # _model_server_result.job_id Zr4BJqeeUdydUlFzpZ6tAQ _model_server_result.datetime_utc '2025-07-14 15:45:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6X4J # _exptl.entry_id 6X4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.441 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(4-{[4-(propan-2-yl)phenyl]acetyl}piperazin-1-yl)pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X4J _cell.length_a 98.428 _cell.length_b 98.428 _cell.length_c 68.922 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -45.948 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 401 1_555 C O3G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 B MG MG . A MG 401 1_555 C O1B ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 B MG MG . A MG 401 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc4 B MG MG . A MG 401 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc5 B MG MG . A MG 401 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc6 B MG MG . A MG 401 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? # _chem_comp.formula 'C21 H24 N4 O' _chem_comp.formula_weight 348.441 _chem_comp.id UOM _chem_comp.mon_nstd_flag . _chem_comp.name 6-(4-{[4-(propan-2-yl)phenyl]acetyl}piperazin-1-yl)pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N19 C18 UOM trip 417 n n C18 C17 UOM sing 418 n n C17 C20 UOM doub 419 n y C17 C16 UOM sing 420 n y C20 C21 UOM sing 421 n y C16 N15 UOM doub 422 n y C21 C14 UOM doub 423 n y N15 C14 UOM sing 424 n y C14 N13 UOM sing 425 n n N13 C12 UOM sing 426 n n N13 C22 UOM sing 427 n n C12 C11 UOM sing 428 n n C22 C23 UOM sing 429 n n C11 N10 UOM sing 430 n n C23 N10 UOM sing 431 n n N10 C09 UOM sing 432 n n C09 C08 UOM sing 433 n n C09 O24 UOM doub 434 n n C08 C07 UOM sing 435 n n C06 C07 UOM doub 436 n y C06 C05 UOM sing 437 n y C07 C25 UOM sing 438 n y C05 C04 UOM doub 439 n y C25 C26 UOM doub 440 n y C04 C26 UOM sing 441 n y C04 C02 UOM sing 442 n n C01 C02 UOM sing 443 n n C02 C03 UOM sing 444 n n C01 H1 UOM sing 445 n n C01 H2 UOM sing 446 n n C01 H3 UOM sing 447 n n C02 H4 UOM sing 448 n n C03 H5 UOM sing 449 n n C03 H6 UOM sing 450 n n C03 H7 UOM sing 451 n n C05 H8 UOM sing 452 n n C06 H9 UOM sing 453 n n C08 H10 UOM sing 454 n n C08 H11 UOM sing 455 n n C11 H12 UOM sing 456 n n C11 H13 UOM sing 457 n n C12 H14 UOM sing 458 n n C12 H15 UOM sing 459 n n C16 H16 UOM sing 460 n n C20 H17 UOM sing 461 n n C21 H18 UOM sing 462 n n C22 H19 UOM sing 463 n n C22 H20 UOM sing 464 n n C23 H21 UOM sing 465 n n C23 H22 UOM sing 466 n n C25 H23 UOM sing 467 n n C26 H24 UOM sing 468 n n # _atom_sites.entry_id 6X4J _atom_sites.fract_transf_matrix[1][1] 0.01016 _atom_sites.fract_transf_matrix[1][2] 0.005866 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 3 ANP A 1 402 501 ANP ANP . D 4 UOM A 1 403 1 UOM Y84 . E 5 EDO A 1 404 1 EDO EDO . F 6 HOH A 1 501 2 HOH HOH . F 6 HOH A 2 502 1 HOH HOH . F 6 HOH A 3 503 78 HOH HOH . F 6 HOH A 4 504 81 HOH HOH . F 6 HOH A 5 505 27 HOH HOH . F 6 HOH A 6 506 83 HOH HOH . F 6 HOH A 7 507 57 HOH HOH . F 6 HOH A 8 508 197 HOH HOH . F 6 HOH A 9 509 183 HOH HOH . F 6 HOH A 10 510 125 HOH HOH . F 6 HOH A 11 511 19 HOH HOH . F 6 HOH A 12 512 61 HOH HOH . F 6 HOH A 13 513 5 HOH HOH . F 6 HOH A 14 514 198 HOH HOH . F 6 HOH A 15 515 3 HOH HOH . F 6 HOH A 16 516 28 HOH HOH . F 6 HOH A 17 517 189 HOH HOH . F 6 HOH A 18 518 10 HOH HOH . F 6 HOH A 19 519 17 HOH HOH . F 6 HOH A 20 520 58 HOH HOH . F 6 HOH A 21 521 178 HOH HOH . F 6 HOH A 22 522 182 HOH HOH . F 6 HOH A 23 523 155 HOH HOH . F 6 HOH A 24 524 79 HOH HOH . F 6 HOH A 25 525 94 HOH HOH . F 6 HOH A 26 526 4 HOH HOH . F 6 HOH A 27 527 20 HOH HOH . F 6 HOH A 28 528 185 HOH HOH . F 6 HOH A 29 529 180 HOH HOH . F 6 HOH A 30 530 39 HOH HOH . F 6 HOH A 31 531 184 HOH HOH . F 6 HOH A 32 532 190 HOH HOH . F 6 HOH A 33 533 179 HOH HOH . F 6 HOH A 34 534 176 HOH HOH . F 6 HOH A 35 535 194 HOH HOH . F 6 HOH A 36 536 29 HOH HOH . F 6 HOH A 37 537 186 HOH HOH . F 6 HOH A 38 538 75 HOH HOH . F 6 HOH A 39 539 164 HOH HOH . F 6 HOH A 40 540 191 HOH HOH . F 6 HOH A 41 541 15 HOH HOH . F 6 HOH A 42 542 37 HOH HOH . F 6 HOH A 43 543 193 HOH HOH . F 6 HOH A 44 544 175 HOH HOH . F 6 HOH A 45 545 41 HOH HOH . F 6 HOH A 46 546 166 HOH HOH . F 6 HOH A 47 547 173 HOH HOH . F 6 HOH A 48 548 153 HOH HOH . F 6 HOH A 49 549 85 HOH HOH . F 6 HOH A 50 550 147 HOH HOH . F 6 HOH A 51 551 6 HOH HOH . F 6 HOH A 52 552 168 HOH HOH . F 6 HOH A 53 553 132 HOH HOH . F 6 HOH A 54 554 163 HOH HOH . F 6 HOH A 55 555 32 HOH HOH . F 6 HOH A 56 556 165 HOH HOH . F 6 HOH A 57 557 172 HOH HOH . F 6 HOH A 58 558 199 HOH HOH . F 6 HOH A 59 559 195 HOH HOH . F 6 HOH A 60 560 93 HOH HOH . F 6 HOH A 61 561 16 HOH HOH . F 6 HOH A 62 562 77 HOH HOH . F 6 HOH A 63 563 192 HOH HOH . F 6 HOH A 64 564 188 HOH HOH . F 6 HOH A 65 565 82 HOH HOH . F 6 HOH A 66 566 196 HOH HOH . F 6 HOH A 67 567 187 HOH HOH . F 6 HOH A 68 568 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 UOM . . . D 4 28.381 -18.942 -17.105 1 52.59 ? C01 UOM 403 A 1 HETATM 2 C C02 UOM . . . D 4 28.186 -20.446 -16.969 1 52.73 ? C02 UOM 403 A 1 HETATM 3 C C03 UOM . . . D 4 29.516 -21.161 -16.753 1 51.44 ? C03 UOM 403 A 1 HETATM 4 C C04 UOM . . . D 4 27.453 -21.008 -18.187 1 54.49 ? C04 UOM 403 A 1 HETATM 5 C C05 UOM . . . D 4 28.027 -20.901 -19.444 1 54.27 ? C05 UOM 403 A 1 HETATM 6 C C06 UOM . . . D 4 27.365 -21.411 -20.55 1 55.23 ? C06 UOM 403 A 1 HETATM 7 C C07 UOM . . . D 4 26.131 -22.025 -20.392 1 56.44 ? C07 UOM 403 A 1 HETATM 8 C C08 UOM . . . D 4 25.404 -22.592 -21.606 1 56.95 ? C08 UOM 403 A 1 HETATM 9 C C09 UOM . . . D 4 26.179 -23.78 -22.159 1 56.41 ? C09 UOM 403 A 1 HETATM 10 C C11 UOM . . . D 4 25.07 -23.49 -24.373 1 55.97 ? C11 UOM 403 A 1 HETATM 11 C C12 UOM . . . D 4 24.134 -24.432 -25.115 1 55.5 ? C12 UOM 403 A 1 HETATM 12 C C14 UOM . . . D 4 24.491 -25.975 -27.147 1 52.24 ? C14 UOM 403 A 1 HETATM 13 C C16 UOM . . . D 4 24.399 -27.861 -28.471 1 50.68 ? C16 UOM 403 A 1 HETATM 14 C C17 UOM . . . D 4 23.667 -27.182 -29.427 1 50.63 ? C17 UOM 403 A 1 HETATM 15 C C18 UOM . . . D 4 23.233 -27.913 -30.689 1 50.62 ? C18 UOM 403 A 1 HETATM 16 C C20 UOM . . . D 4 23.343 -25.846 -29.228 1 50.85 ? C20 UOM 403 A 1 HETATM 17 C C21 UOM . . . D 4 23.765 -25.229 -28.06 1 51.26 ? C21 UOM 403 A 1 HETATM 18 C C22 UOM . . . D 4 25.785 -26.165 -24.963 1 54.07 ? C22 UOM 403 A 1 HETATM 19 C C23 UOM . . . D 4 26.662 -25.257 -24.115 1 54.26 ? C23 UOM 403 A 1 HETATM 20 C C25 UOM . . . D 4 25.56 -22.137 -19.136 1 56.29 ? C25 UOM 403 A 1 HETATM 21 C C26 UOM . . . D 4 26.222 -21.625 -18.032 1 55.97 ? C26 UOM 403 A 1 HETATM 22 N N10 UOM . . . D 4 25.97 -24.176 -23.531 1 55.72 ? N10 UOM 403 A 1 HETATM 23 N N13 UOM . . . D 4 24.959 -25.374 -25.921 1 54.14 ? N13 UOM 403 A 1 HETATM 24 N N15 UOM . . . D 4 24.779 -27.239 -27.378 1 51.35 ? N15 UOM 403 A 1 HETATM 25 N N19 UOM . . . D 4 22.916 -28.466 -31.625 1 51.05 ? N19 UOM 403 A 1 HETATM 26 O O24 UOM . . . D 4 26.946 -24.374 -21.478 1 57.62 ? O24 UOM 403 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 446 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #