data_6X4J
#
_model_server_result.job_id            Qp1qeKn6mqt-DqGp2WqauA 
_model_server_result.datetime_utc      '2025-07-08 17:35:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x4j 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
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_entry.id    6X4J 
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_exptl.entry_id    6X4J 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6X4J 
_cell.length_a            98.428 
_cell.length_b            98.428 
_cell.length_c            68.922 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6X4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -45.948 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MG MG . A MG 401 1_555 C O3G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc2 B MG MG . A MG 401 1_555 C O1B ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc3 B MG MG . A MG 401 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc4 B MG MG . A MG 401 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc5 B MG MG . A MG 401 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc6 B MG MG . A MG 401 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 133 n n 
C1 C2 EDO sing 134 n n 
C1 H11 EDO sing 135 n n 
C1 H12 EDO sing 136 n n 
O1 HO1 EDO sing 137 n n 
C2 O2 EDO sing 138 n n 
C2 H21 EDO sing 139 n n 
C2 H22 EDO sing 140 n n 
O2 HO2 EDO sing 141 n n 
#
_atom_sites.entry_id                     6X4J 
_atom_sites.fract_transf_matrix[1][1]    0.01016 
_atom_sites.fract_transf_matrix[1][2]    0.005866 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011731 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014509 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 1 MG MG . 
C 3 ANP A 1 402 501 ANP ANP . 
D 4 UOM A 1 403 1 UOM Y84 . 
E 5 EDO A 1 404 1 EDO EDO . 
F 6 HOH A 1 501 2 HOH HOH . 
F 6 HOH A 2 502 1 HOH HOH . 
F 6 HOH A 3 503 78 HOH HOH . 
F 6 HOH A 4 504 81 HOH HOH . 
F 6 HOH A 5 505 27 HOH HOH . 
F 6 HOH A 6 506 83 HOH HOH . 
F 6 HOH A 7 507 57 HOH HOH . 
F 6 HOH A 8 508 197 HOH HOH . 
F 6 HOH A 9 509 183 HOH HOH . 
F 6 HOH A 10 510 125 HOH HOH . 
F 6 HOH A 11 511 19 HOH HOH . 
F 6 HOH A 12 512 61 HOH HOH . 
F 6 HOH A 13 513 5 HOH HOH . 
F 6 HOH A 14 514 198 HOH HOH . 
F 6 HOH A 15 515 3 HOH HOH . 
F 6 HOH A 16 516 28 HOH HOH . 
F 6 HOH A 17 517 189 HOH HOH . 
F 6 HOH A 18 518 10 HOH HOH . 
F 6 HOH A 19 519 17 HOH HOH . 
F 6 HOH A 20 520 58 HOH HOH . 
F 6 HOH A 21 521 178 HOH HOH . 
F 6 HOH A 22 522 182 HOH HOH . 
F 6 HOH A 23 523 155 HOH HOH . 
F 6 HOH A 24 524 79 HOH HOH . 
F 6 HOH A 25 525 94 HOH HOH . 
F 6 HOH A 26 526 4 HOH HOH . 
F 6 HOH A 27 527 20 HOH HOH . 
F 6 HOH A 28 528 185 HOH HOH . 
F 6 HOH A 29 529 180 HOH HOH . 
F 6 HOH A 30 530 39 HOH HOH . 
F 6 HOH A 31 531 184 HOH HOH . 
F 6 HOH A 32 532 190 HOH HOH . 
F 6 HOH A 33 533 179 HOH HOH . 
F 6 HOH A 34 534 176 HOH HOH . 
F 6 HOH A 35 535 194 HOH HOH . 
F 6 HOH A 36 536 29 HOH HOH . 
F 6 HOH A 37 537 186 HOH HOH . 
F 6 HOH A 38 538 75 HOH HOH . 
F 6 HOH A 39 539 164 HOH HOH . 
F 6 HOH A 40 540 191 HOH HOH . 
F 6 HOH A 41 541 15 HOH HOH . 
F 6 HOH A 42 542 37 HOH HOH . 
F 6 HOH A 43 543 193 HOH HOH . 
F 6 HOH A 44 544 175 HOH HOH . 
F 6 HOH A 45 545 41 HOH HOH . 
F 6 HOH A 46 546 166 HOH HOH . 
F 6 HOH A 47 547 173 HOH HOH . 
F 6 HOH A 48 548 153 HOH HOH . 
F 6 HOH A 49 549 85 HOH HOH . 
F 6 HOH A 50 550 147 HOH HOH . 
F 6 HOH A 51 551 6 HOH HOH . 
F 6 HOH A 52 552 168 HOH HOH . 
F 6 HOH A 53 553 132 HOH HOH . 
F 6 HOH A 54 554 163 HOH HOH . 
F 6 HOH A 55 555 32 HOH HOH . 
F 6 HOH A 56 556 165 HOH HOH . 
F 6 HOH A 57 557 172 HOH HOH . 
F 6 HOH A 58 558 199 HOH HOH . 
F 6 HOH A 59 559 195 HOH HOH . 
F 6 HOH A 60 560 93 HOH HOH . 
F 6 HOH A 61 561 16 HOH HOH . 
F 6 HOH A 62 562 77 HOH HOH . 
F 6 HOH A 63 563 192 HOH HOH . 
F 6 HOH A 64 564 188 HOH HOH . 
F 6 HOH A 65 565 82 HOH HOH . 
F 6 HOH A 66 566 196 HOH HOH . 
F 6 HOH A 67 567 187 HOH HOH . 
F 6 HOH A 68 568 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 5 19.573 -9.42 -2.902 1 71.65 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . E 5 19.067 -8.369 -3.733 1 71.7 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . E 5 20.754 -10.092 -3.591 1 71.16 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . E 5 20.949 -11.395 -3.033 1 70.89 ? O2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#