data_6X4J # _model_server_result.job_id Qp1qeKn6mqt-DqGp2WqauA _model_server_result.datetime_utc '2025-07-08 17:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6X4J # _exptl.entry_id 6X4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X4J _cell.length_a 98.428 _cell.length_b 98.428 _cell.length_c 68.922 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -45.948 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 401 1_555 C O3G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 B MG MG . A MG 401 1_555 C O1B ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 B MG MG . A MG 401 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc4 B MG MG . A MG 401 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc5 B MG MG . A MG 401 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc6 B MG MG . A MG 401 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 133 n n C1 C2 EDO sing 134 n n C1 H11 EDO sing 135 n n C1 H12 EDO sing 136 n n O1 HO1 EDO sing 137 n n C2 O2 EDO sing 138 n n C2 H21 EDO sing 139 n n C2 H22 EDO sing 140 n n O2 HO2 EDO sing 141 n n # _atom_sites.entry_id 6X4J _atom_sites.fract_transf_matrix[1][1] 0.01016 _atom_sites.fract_transf_matrix[1][2] 0.005866 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 3 ANP A 1 402 501 ANP ANP . D 4 UOM A 1 403 1 UOM Y84 . E 5 EDO A 1 404 1 EDO EDO . F 6 HOH A 1 501 2 HOH HOH . F 6 HOH A 2 502 1 HOH HOH . F 6 HOH A 3 503 78 HOH HOH . F 6 HOH A 4 504 81 HOH HOH . F 6 HOH A 5 505 27 HOH HOH . F 6 HOH A 6 506 83 HOH HOH . F 6 HOH A 7 507 57 HOH HOH . F 6 HOH A 8 508 197 HOH HOH . F 6 HOH A 9 509 183 HOH HOH . F 6 HOH A 10 510 125 HOH HOH . F 6 HOH A 11 511 19 HOH HOH . F 6 HOH A 12 512 61 HOH HOH . F 6 HOH A 13 513 5 HOH HOH . F 6 HOH A 14 514 198 HOH HOH . F 6 HOH A 15 515 3 HOH HOH . F 6 HOH A 16 516 28 HOH HOH . F 6 HOH A 17 517 189 HOH HOH . F 6 HOH A 18 518 10 HOH HOH . F 6 HOH A 19 519 17 HOH HOH . F 6 HOH A 20 520 58 HOH HOH . F 6 HOH A 21 521 178 HOH HOH . F 6 HOH A 22 522 182 HOH HOH . F 6 HOH A 23 523 155 HOH HOH . F 6 HOH A 24 524 79 HOH HOH . F 6 HOH A 25 525 94 HOH HOH . F 6 HOH A 26 526 4 HOH HOH . F 6 HOH A 27 527 20 HOH HOH . F 6 HOH A 28 528 185 HOH HOH . F 6 HOH A 29 529 180 HOH HOH . F 6 HOH A 30 530 39 HOH HOH . F 6 HOH A 31 531 184 HOH HOH . F 6 HOH A 32 532 190 HOH HOH . F 6 HOH A 33 533 179 HOH HOH . F 6 HOH A 34 534 176 HOH HOH . F 6 HOH A 35 535 194 HOH HOH . F 6 HOH A 36 536 29 HOH HOH . F 6 HOH A 37 537 186 HOH HOH . F 6 HOH A 38 538 75 HOH HOH . F 6 HOH A 39 539 164 HOH HOH . F 6 HOH A 40 540 191 HOH HOH . F 6 HOH A 41 541 15 HOH HOH . F 6 HOH A 42 542 37 HOH HOH . F 6 HOH A 43 543 193 HOH HOH . F 6 HOH A 44 544 175 HOH HOH . F 6 HOH A 45 545 41 HOH HOH . F 6 HOH A 46 546 166 HOH HOH . F 6 HOH A 47 547 173 HOH HOH . F 6 HOH A 48 548 153 HOH HOH . F 6 HOH A 49 549 85 HOH HOH . F 6 HOH A 50 550 147 HOH HOH . F 6 HOH A 51 551 6 HOH HOH . F 6 HOH A 52 552 168 HOH HOH . F 6 HOH A 53 553 132 HOH HOH . F 6 HOH A 54 554 163 HOH HOH . F 6 HOH A 55 555 32 HOH HOH . F 6 HOH A 56 556 165 HOH HOH . F 6 HOH A 57 557 172 HOH HOH . F 6 HOH A 58 558 199 HOH HOH . F 6 HOH A 59 559 195 HOH HOH . F 6 HOH A 60 560 93 HOH HOH . F 6 HOH A 61 561 16 HOH HOH . F 6 HOH A 62 562 77 HOH HOH . F 6 HOH A 63 563 192 HOH HOH . F 6 HOH A 64 564 188 HOH HOH . F 6 HOH A 65 565 82 HOH HOH . F 6 HOH A 66 566 196 HOH HOH . F 6 HOH A 67 567 187 HOH HOH . F 6 HOH A 68 568 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 19.573 -9.42 -2.902 1 71.65 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 5 19.067 -8.369 -3.733 1 71.7 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 5 20.754 -10.092 -3.591 1 71.16 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 5 20.949 -11.395 -3.033 1 70.89 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #