data_6X4K
#
_model_server_result.job_id            '_KUU5qyCoI8PqafyTD-ybg' 
_model_server_result.datetime_utc      '2025-07-17 02:59:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x4k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6X4K 
#
_exptl.entry_id    6X4K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6X4K 
_cell.length_a            98.485 
_cell.length_b            98.485 
_cell.length_c            69.016 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X4K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -46.010667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O3G ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc2 C O2B ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 D MG MG . A MG 403 1_555 H O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc4 D MG MG . A MG 403 1_555 H O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc5 D MG MG . A MG 403 1_555 H O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 D MG MG . A MG 403 1_555 H O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     6X4K 
_atom_sites.fract_transf_matrix[1][1]    0.010154 
_atom_sites.fract_transf_matrix[1][2]    0.005862 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014489 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UOP A 1 401 1 UOP Y85 . 
C 3 ANP A 1 402 501 ANP ANP . 
D 4 MG A 1 403 502 MG MG . 
E 5 EDO A 1 404 503 EDO EDO . 
F 5 EDO A 1 405 504 EDO EDO . 
G 6 CL A 1 406 1 CL CL . 
H 7 HOH A 1 501 6 HOH HOH . 
H 7 HOH A 2 502 3 HOH HOH . 
H 7 HOH A 3 503 102 HOH HOH . 
H 7 HOH A 4 504 4 HOH HOH . 
H 7 HOH A 5 505 1 HOH HOH . 
H 7 HOH A 6 506 10 HOH HOH . 
H 7 HOH A 7 507 5 HOH HOH . 
H 7 HOH A 8 508 99 HOH HOH . 
H 7 HOH A 9 509 21 HOH HOH . 
H 7 HOH A 10 510 52 HOH HOH . 
H 7 HOH A 11 511 38 HOH HOH . 
H 7 HOH A 12 512 14 HOH HOH . 
H 7 HOH A 13 513 41 HOH HOH . 
H 7 HOH A 14 514 28 HOH HOH . 
H 7 HOH A 15 515 23 HOH HOH . 
H 7 HOH A 16 516 18 HOH HOH . 
H 7 HOH A 17 517 16 HOH HOH . 
H 7 HOH A 18 518 24 HOH HOH . 
H 7 HOH A 19 519 33 HOH HOH . 
H 7 HOH A 20 520 31 HOH HOH . 
H 7 HOH A 21 521 27 HOH HOH . 
H 7 HOH A 22 522 20 HOH HOH . 
H 7 HOH A 23 523 13 HOH HOH . 
H 7 HOH A 24 524 62 HOH HOH . 
H 7 HOH A 25 525 46 HOH HOH . 
H 7 HOH A 26 526 67 HOH HOH . 
H 7 HOH A 27 527 12 HOH HOH . 
H 7 HOH A 28 528 106 HOH HOH . 
H 7 HOH A 29 529 40 HOH HOH . 
H 7 HOH A 30 530 49 HOH HOH . 
H 7 HOH A 31 531 39 HOH HOH . 
H 7 HOH A 32 532 9 HOH HOH . 
H 7 HOH A 33 533 8 HOH HOH . 
H 7 HOH A 34 534 44 HOH HOH . 
H 7 HOH A 35 535 26 HOH HOH . 
H 7 HOH A 36 536 36 HOH HOH . 
H 7 HOH A 37 537 37 HOH HOH . 
H 7 HOH A 38 538 45 HOH HOH . 
H 7 HOH A 39 539 34 HOH HOH . 
H 7 HOH A 40 540 35 HOH HOH . 
H 7 HOH A 41 541 68 HOH HOH . 
H 7 HOH A 42 542 47 HOH HOH . 
H 7 HOH A 43 543 7 HOH HOH . 
H 7 HOH A 44 544 101 HOH HOH . 
H 7 HOH A 45 545 66 HOH HOH . 
H 7 HOH A 46 546 11 HOH HOH . 
H 7 HOH A 47 547 53 HOH HOH . 
H 7 HOH A 48 548 72 HOH HOH . 
H 7 HOH A 49 549 32 HOH HOH . 
H 7 HOH A 50 550 22 HOH HOH . 
H 7 HOH A 51 551 61 HOH HOH . 
H 7 HOH A 52 552 54 HOH HOH . 
H 7 HOH A 53 553 50 HOH HOH . 
H 7 HOH A 54 554 73 HOH HOH . 
H 7 HOH A 55 555 58 HOH HOH . 
H 7 HOH A 56 556 56 HOH HOH . 
H 7 HOH A 57 557 78 HOH HOH . 
H 7 HOH A 58 558 71 HOH HOH . 
H 7 HOH A 59 559 84 HOH HOH . 
H 7 HOH A 60 560 65 HOH HOH . 
H 7 HOH A 61 561 59 HOH HOH . 
H 7 HOH A 62 562 74 HOH HOH . 
H 7 HOH A 63 563 17 HOH HOH . 
H 7 HOH A 64 564 30 HOH HOH . 
H 7 HOH A 65 565 94 HOH HOH . 
H 7 HOH A 66 566 48 HOH HOH . 
H 7 HOH A 67 567 51 HOH HOH . 
H 7 HOH A 68 568 60 HOH HOH . 
H 7 HOH A 69 569 91 HOH HOH . 
H 7 HOH A 70 570 70 HOH HOH . 
H 7 HOH A 71 571 25 HOH HOH . 
H 7 HOH A 72 572 57 HOH HOH . 
H 7 HOH A 73 573 42 HOH HOH . 
H 7 HOH A 74 574 96 HOH HOH . 
H 7 HOH A 75 575 81 HOH HOH . 
H 7 HOH A 76 576 69 HOH HOH . 
H 7 HOH A 77 577 77 HOH HOH . 
H 7 HOH A 78 578 75 HOH HOH . 
H 7 HOH A 79 579 83 HOH HOH . 
H 7 HOH A 80 580 63 HOH HOH . 
H 7 HOH A 81 581 80 HOH HOH . 
H 7 HOH A 82 582 104 HOH HOH . 
H 7 HOH A 83 583 79 HOH HOH . 
H 7 HOH A 84 584 82 HOH HOH . 
H 7 HOH A 85 585 85 HOH HOH . 
H 7 HOH A 86 586 55 HOH HOH . 
H 7 HOH A 87 587 29 HOH HOH . 
H 7 HOH A 88 588 64 HOH HOH . 
H 7 HOH A 89 589 76 HOH HOH . 
H 7 HOH A 90 590 86 HOH HOH . 
H 7 HOH A 91 591 97 HOH HOH . 
H 7 HOH A 92 592 87 HOH HOH . 
H 7 HOH A 93 593 103 HOH HOH . 
H 7 HOH A 94 594 89 HOH HOH . 
H 7 HOH A 95 595 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 -26.503 17.542 -13.272 1 33.52 ? PG ANP 402 A 1 
HETATM 2 O O1G ANP . . . C 3 -25.846 18.235 -14.456 1 36.69 ? O1G ANP 402 A 1 
HETATM 3 O O2G ANP . . . C 3 -27.57 16.527 -13.834 1 29.91 ? O2G ANP 402 A 1 
HETATM 4 O O3G ANP . . . C 3 -27.151 18.663 -12.354 1 34.92 ? O3G ANP 402 A 1 
HETATM 5 P PB ANP . . . C 3 -25.291 16.54 -10.82 1 27.6 ? PB ANP 402 A 1 
HETATM 6 O O1B ANP . . . C 3 -25.129 15.107 -10.457 1 25.76 ? O1B ANP 402 A 1 
HETATM 7 O O2B ANP . . . C 3 -26.538 17.147 -10.111 1 29.85 ? O2B ANP 402 A 1 
HETATM 8 N N3B ANP . . . C 3 -25.296 16.67 -12.476 1 24.82 ? N3B ANP 402 A 1 
HETATM 9 P PA ANP . . . C 3 -23.465 17.725 -8.976 1 27.74 ? PA ANP 402 A 1 
HETATM 10 O O1A ANP . . . C 3 -23.75 19.144 -8.589 1 28.87 ? O1A ANP 402 A 1 
HETATM 11 O O2A ANP . . . C 3 -23.913 16.707 -7.921 1 26.69 ? O2A ANP 402 A 1 
HETATM 12 O O3A ANP . . . C 3 -24.002 17.315 -10.417 1 26.25 ? O3A ANP 402 A 1 
HETATM 13 O O5' ANP . . . C 3 -21.882 17.666 -9.242 1 25.94 ? O5' ANP 402 A 1 
HETATM 14 C C5' ANP . . . C 3 -21.293 16.544 -9.911 1 25.43 ? C5' ANP 402 A 1 
HETATM 15 C C4' ANP . . . C 3 -19.815 16.782 -10.085 1 27.08 ? C4' ANP 402 A 1 
HETATM 16 O O4' ANP . . . C 3 -19.194 16.934 -8.794 1 29.47 ? O4' ANP 402 A 1 
HETATM 17 C C3' ANP . . . C 3 -19.048 15.661 -10.782 1 25.65 ? C3' ANP 402 A 1 
HETATM 18 O O3' ANP . . . C 3 -19.036 15.906 -12.186 1 24.76 ? O3' ANP 402 A 1 
HETATM 19 C C2' ANP . . . C 3 -17.631 15.814 -10.208 1 31.79 ? C2' ANP 402 A 1 
HETATM 20 O O2' ANP . . . C 3 -16.898 16.8 -10.925 1 27.77 ? O2' ANP 402 A 1 
HETATM 21 C C1' ANP . . . C 3 -17.894 16.377 -8.803 1 29.71 ? C1' ANP 402 A 1 
HETATM 22 N N9 ANP . . . C 3 -17.823 15.417 -7.711 1 26.07 ? N9 ANP 402 A 1 
HETATM 23 C C8 ANP . . . C 3 -17.535 15.737 -6.412 1 25.34 ? C8 ANP 402 A 1 
HETATM 24 N N7 ANP . . . C 3 -17.561 14.723 -5.586 1 27.89 ? N7 ANP 402 A 1 
HETATM 25 C C5 ANP . . . C 3 -17.897 13.655 -6.402 1 28.07 ? C5 ANP 402 A 1 
HETATM 26 C C6 ANP . . . C 3 -18.08 12.283 -6.128 1 31.57 ? C6 ANP 402 A 1 
HETATM 27 N N6 ANP . . . C 3 -17.945 11.747 -4.912 1 34.24 ? N6 ANP 402 A 1 
HETATM 28 N N1 ANP . . . C 3 -18.418 11.476 -7.167 1 31.33 ? N1 ANP 402 A 1 
HETATM 29 C C2 ANP . . . C 3 -18.559 12.014 -8.382 1 29.74 ? C2 ANP 402 A 1 
HETATM 30 N N3 ANP . . . C 3 -18.412 13.291 -8.753 1 29.61 ? N3 ANP 402 A 1 
HETATM 31 C C4 ANP . . . C 3 -18.079 14.064 -7.708 1 23.08 ? C4 ANP 402 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#