data_6X4L # _model_server_result.job_id zYdjiT7rFY4q8rQxNIeiYw _model_server_result.datetime_utc '2025-07-07 13:51:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6X4L # _exptl.entry_id 6X4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X4L _cell.length_a 98.514 _cell.length_b 98.514 _cell.length_c 68.82 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -22.94 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O3G ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc2 C O1B ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc3 D MG MG . A MG 403 1_555 H O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 D MG MG . A MG 403 1_555 H O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc5 D MG MG . A MG 403 1_555 H O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc6 D MG MG . A MG 403 1_555 H O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6X4L _atom_sites.fract_transf_matrix[1][1] 0.010151 _atom_sites.fract_transf_matrix[1][2] 0.005861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UOS A 1 401 1 UOS Y86 . C 3 ANP A 1 402 501 ANP ANP . D 4 MG A 1 403 1 MG MG . E 5 EDO A 1 404 1 EDO EDO . F 5 EDO A 1 405 2 EDO EDO . G 6 CL A 1 406 1 CL CL . H 7 HOH A 1 501 182 HOH HOH . H 7 HOH A 2 502 19 HOH HOH . H 7 HOH A 3 503 220 HOH HOH . H 7 HOH A 4 504 57 HOH HOH . H 7 HOH A 5 505 113 HOH HOH . H 7 HOH A 6 506 8 HOH HOH . H 7 HOH A 7 507 46 HOH HOH . H 7 HOH A 8 508 54 HOH HOH . H 7 HOH A 9 509 5 HOH HOH . H 7 HOH A 10 510 70 HOH HOH . H 7 HOH A 11 511 62 HOH HOH . H 7 HOH A 12 512 20 HOH HOH . H 7 HOH A 13 513 10 HOH HOH . H 7 HOH A 14 514 78 HOH HOH . H 7 HOH A 15 515 59 HOH HOH . H 7 HOH A 16 516 29 HOH HOH . H 7 HOH A 17 517 235 HOH HOH . H 7 HOH A 18 518 40 HOH HOH . H 7 HOH A 19 519 55 HOH HOH . H 7 HOH A 20 520 204 HOH HOH . H 7 HOH A 21 521 51 HOH HOH . H 7 HOH A 22 522 2 HOH HOH . H 7 HOH A 23 523 192 HOH HOH . H 7 HOH A 24 524 36 HOH HOH . H 7 HOH A 25 525 227 HOH HOH . H 7 HOH A 26 526 50 HOH HOH . H 7 HOH A 27 527 193 HOH HOH . H 7 HOH A 28 528 26 HOH HOH . H 7 HOH A 29 529 7 HOH HOH . H 7 HOH A 30 530 6 HOH HOH . H 7 HOH A 31 531 152 HOH HOH . H 7 HOH A 32 532 228 HOH HOH . H 7 HOH A 33 533 21 HOH HOH . H 7 HOH A 34 534 211 HOH HOH . H 7 HOH A 35 535 225 HOH HOH . H 7 HOH A 36 536 203 HOH HOH . H 7 HOH A 37 537 11 HOH HOH . H 7 HOH A 38 538 47 HOH HOH . H 7 HOH A 39 539 48 HOH HOH . H 7 HOH A 40 540 226 HOH HOH . H 7 HOH A 41 541 200 HOH HOH . H 7 HOH A 42 542 27 HOH HOH . H 7 HOH A 43 543 221 HOH HOH . H 7 HOH A 44 544 23 HOH HOH . H 7 HOH A 45 545 34 HOH HOH . H 7 HOH A 46 546 4 HOH HOH . H 7 HOH A 47 547 18 HOH HOH . H 7 HOH A 48 548 194 HOH HOH . H 7 HOH A 49 549 66 HOH HOH . H 7 HOH A 50 550 93 HOH HOH . H 7 HOH A 51 551 199 HOH HOH . H 7 HOH A 52 552 60 HOH HOH . H 7 HOH A 53 553 42 HOH HOH . H 7 HOH A 54 554 56 HOH HOH . H 7 HOH A 55 555 189 HOH HOH . H 7 HOH A 56 556 38 HOH HOH . H 7 HOH A 57 557 195 HOH HOH . H 7 HOH A 58 558 236 HOH HOH . H 7 HOH A 59 559 230 HOH HOH . H 7 HOH A 60 560 179 HOH HOH . H 7 HOH A 61 561 37 HOH HOH . H 7 HOH A 62 562 65 HOH HOH . H 7 HOH A 63 563 188 HOH HOH . H 7 HOH A 64 564 153 HOH HOH . H 7 HOH A 65 565 206 HOH HOH . H 7 HOH A 66 566 234 HOH HOH . H 7 HOH A 67 567 76 HOH HOH . H 7 HOH A 68 568 16 HOH HOH . H 7 HOH A 69 569 35 HOH HOH . H 7 HOH A 70 570 210 HOH HOH . H 7 HOH A 71 571 162 HOH HOH . H 7 HOH A 72 572 49 HOH HOH . H 7 HOH A 73 573 184 HOH HOH . H 7 HOH A 74 574 33 HOH HOH . H 7 HOH A 75 575 82 HOH HOH . H 7 HOH A 76 576 214 HOH HOH . H 7 HOH A 77 577 61 HOH HOH . H 7 HOH A 78 578 202 HOH HOH . H 7 HOH A 79 579 198 HOH HOH . H 7 HOH A 80 580 218 HOH HOH . H 7 HOH A 81 581 161 HOH HOH . H 7 HOH A 82 582 219 HOH HOH . H 7 HOH A 83 583 213 HOH HOH . H 7 HOH A 84 584 197 HOH HOH . H 7 HOH A 85 585 216 HOH HOH . H 7 HOH A 86 586 208 HOH HOH . H 7 HOH A 87 587 103 HOH HOH . H 7 HOH A 88 588 231 HOH HOH . H 7 HOH A 89 589 127 HOH HOH . H 7 HOH A 90 590 205 HOH HOH . H 7 HOH A 91 591 196 HOH HOH . H 7 HOH A 92 592 209 HOH HOH . H 7 HOH A 93 593 237 HOH HOH . H 7 HOH A 94 594 215 HOH HOH . H 7 HOH A 95 595 122 HOH HOH . H 7 HOH A 96 596 233 HOH HOH . H 7 HOH A 97 597 156 HOH HOH . H 7 HOH A 98 598 217 HOH HOH . H 7 HOH A 99 599 58 HOH HOH . H 7 HOH A 100 600 207 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -30.06 _atom_site.Cartn_y -14.392 _atom_site.Cartn_z 1.064 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #