data_6X5L # _model_server_result.job_id odshb_LBEpZMfRoG2cmwJQ _model_server_result.datetime_utc '2024-11-05 18:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6X5L # _exptl.entry_id 6X5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X5L _cell.length_a 100.56 _cell.length_b 100.56 _cell.length_c 98.202 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 41 1_555 A SG CYS 42 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 109 A CYS 124 1_555 B SG CYS 49 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 156 A CYS 171 1_555 A SG CYS 170 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 A SG CYS 181 A CYS 196 1_555 A SG CYS 209 A CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 B SG CYS 5 B CYS 88 1_555 B SG CYS 16 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 12 B CYS 95 1_555 B SG CYS 26 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 28 B CYS 111 1_555 B SG CYS 41 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A OE1 GLU 55 A GLU 70 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A O ASN 57 A ASN 72 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 A O GLU 60 A GLU 75 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A OE1 GLU 62 A GLU 77 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc5 A OE1 GLU 65 A GLU 80 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc6 D NA NA . A NA 302 1_555 K O HOH . A HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6X5L _atom_sites.fract_transf_matrix[1][1] 0.009944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UQG A 1 301 250 UQG UNL . D 4 NA A 1 302 251 NA NA . E 5 CIT A 1 303 252 CIT CIT . F 5 CIT A 1 304 253 CIT CIT . G 5 CIT A 1 305 254 CIT CIT . H 5 CIT A 1 306 255 CIT CIT . I 6 GOL A 1 307 256 GOL GOL . J 6 GOL A 1 308 257 GOL GOL . K 7 HOH A 1 401 1345 HOH HOH . K 7 HOH A 2 402 1310 HOH HOH . K 7 HOH A 3 403 1320 HOH HOH . K 7 HOH A 4 404 1266 HOH HOH . K 7 HOH A 5 405 1288 HOH HOH . K 7 HOH A 6 406 1337 HOH HOH . K 7 HOH A 7 407 1339 HOH HOH . K 7 HOH A 8 408 1308 HOH HOH . K 7 HOH A 9 409 1301 HOH HOH . K 7 HOH A 10 410 1298 HOH HOH . K 7 HOH A 11 411 1268 HOH HOH . K 7 HOH A 12 412 1270 HOH HOH . K 7 HOH A 13 413 1264 HOH HOH . K 7 HOH A 14 414 1295 HOH HOH . K 7 HOH A 15 415 1286 HOH HOH . K 7 HOH A 16 416 1289 HOH HOH . K 7 HOH A 17 417 1302 HOH HOH . K 7 HOH A 18 418 1262 HOH HOH . K 7 HOH A 19 419 1322 HOH HOH . K 7 HOH A 20 420 1278 HOH HOH . K 7 HOH A 21 421 1276 HOH HOH . K 7 HOH A 22 422 1284 HOH HOH . K 7 HOH A 23 423 1364 HOH HOH . K 7 HOH A 24 424 1312 HOH HOH . K 7 HOH A 25 425 1336 HOH HOH . K 7 HOH A 26 426 1283 HOH HOH . K 7 HOH A 27 427 1279 HOH HOH . K 7 HOH A 28 428 1323 HOH HOH . K 7 HOH A 29 429 1349 HOH HOH . K 7 HOH A 30 430 1317 HOH HOH . K 7 HOH A 31 431 1277 HOH HOH . K 7 HOH A 32 432 1272 HOH HOH . K 7 HOH A 33 433 1285 HOH HOH . K 7 HOH A 34 434 1265 HOH HOH . K 7 HOH A 35 435 1354 HOH HOH . K 7 HOH A 36 436 1313 HOH HOH . K 7 HOH A 37 437 1271 HOH HOH . K 7 HOH A 38 438 1267 HOH HOH . K 7 HOH A 39 439 1330 HOH HOH . K 7 HOH A 40 440 1261 HOH HOH . K 7 HOH A 41 441 1257 HOH HOH . K 7 HOH A 42 442 1355 HOH HOH . K 7 HOH A 43 443 1314 HOH HOH . K 7 HOH A 44 444 1293 HOH HOH . K 7 HOH A 45 445 1357 HOH HOH . K 7 HOH A 46 446 1291 HOH HOH . K 7 HOH A 47 447 1299 HOH HOH . K 7 HOH A 48 448 1287 HOH HOH . K 7 HOH A 49 449 1369 HOH HOH . K 7 HOH A 50 450 1344 HOH HOH . K 7 HOH A 51 451 1269 HOH HOH . K 7 HOH A 52 452 1258 HOH HOH . K 7 HOH A 53 453 1334 HOH HOH . K 7 HOH A 54 454 1300 HOH HOH . K 7 HOH A 55 455 1275 HOH HOH . K 7 HOH A 56 456 1328 HOH HOH . K 7 HOH A 57 457 1324 HOH HOH . K 7 HOH A 58 458 1296 HOH HOH . K 7 HOH A 59 459 1315 HOH HOH . K 7 HOH A 60 460 1305 HOH HOH . K 7 HOH A 61 461 1259 HOH HOH . K 7 HOH A 62 462 1319 HOH HOH . K 7 HOH A 63 463 1281 HOH HOH . K 7 HOH A 64 464 1342 HOH HOH . K 7 HOH A 65 465 1366 HOH HOH . K 7 HOH A 66 466 1316 HOH HOH . K 7 HOH A 67 467 1346 HOH HOH . K 7 HOH A 68 468 1273 HOH HOH . K 7 HOH A 69 469 1318 HOH HOH . K 7 HOH A 70 470 1348 HOH HOH . K 7 HOH A 71 471 1263 HOH HOH . K 7 HOH A 72 472 1329 HOH HOH . K 7 HOH A 73 473 1304 HOH HOH . K 7 HOH A 74 474 1358 HOH HOH . K 7 HOH A 75 475 1321 HOH HOH . K 7 HOH A 76 476 1309 HOH HOH . K 7 HOH A 77 477 1306 HOH HOH . K 7 HOH A 78 478 1368 HOH HOH . K 7 HOH A 79 479 1294 HOH HOH . K 7 HOH A 80 480 1326 HOH HOH . K 7 HOH A 81 481 1353 HOH HOH . K 7 HOH A 82 482 1274 HOH HOH . K 7 HOH A 83 483 1343 HOH HOH . K 7 HOH A 84 484 1365 HOH HOH . K 7 HOH A 85 485 1359 HOH HOH . K 7 HOH A 86 486 1327 HOH HOH . K 7 HOH A 87 487 1351 HOH HOH . K 7 HOH A 88 488 1341 HOH HOH . K 7 HOH A 89 489 1297 HOH HOH . K 7 HOH A 90 490 1338 HOH HOH . K 7 HOH A 91 491 1290 HOH HOH . K 7 HOH A 92 492 1360 HOH HOH . K 7 HOH A 93 493 1335 HOH HOH . K 7 HOH A 94 494 1378 HOH HOH . K 7 HOH A 95 495 1371 HOH HOH . K 7 HOH A 96 496 1260 HOH HOH . K 7 HOH A 97 497 1325 HOH HOH . K 7 HOH A 98 498 1340 HOH HOH . K 7 HOH A 99 499 1332 HOH HOH . K 7 HOH A 100 500 1307 HOH HOH . K 7 HOH A 101 501 1379 HOH HOH . K 7 HOH A 102 502 1311 HOH HOH . K 7 HOH A 103 503 1303 HOH HOH . K 7 HOH A 104 504 1363 HOH HOH . K 7 HOH A 105 505 1352 HOH HOH . K 7 HOH A 106 506 1333 HOH HOH . K 7 HOH A 107 507 1362 HOH HOH . K 7 HOH A 108 508 1356 HOH HOH . K 7 HOH A 109 509 1370 HOH HOH . K 7 HOH A 110 510 1282 HOH HOH . K 7 HOH A 111 511 1377 HOH HOH . K 7 HOH A 112 512 1372 HOH HOH . K 7 HOH A 113 513 1376 HOH HOH . K 7 HOH A 114 514 1361 HOH HOH . K 7 HOH A 115 515 1380 HOH HOH . K 7 HOH A 116 516 1347 HOH HOH . K 7 HOH A 117 517 1375 HOH HOH . K 7 HOH A 118 518 1350 HOH HOH . K 7 HOH A 119 519 1149 HOH HOH . K 7 HOH A 120 520 1373 HOH HOH . K 7 HOH A 121 521 1367 HOH HOH . L 7 HOH B 1 201 1145 HOH HOH . L 7 HOH B 2 202 1148 HOH HOH . L 7 HOH B 3 203 1141 HOH HOH . L 7 HOH B 4 204 1142 HOH HOH . L 7 HOH B 5 205 1144 HOH HOH . L 7 HOH B 6 206 1140 HOH HOH . L 7 HOH B 7 207 1374 HOH HOH . L 7 HOH B 8 208 1143 HOH HOH . L 7 HOH B 9 209 1146 HOH HOH . L 7 HOH B 10 210 1147 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 21.19 _atom_site.Cartn_y 28.118 _atom_site.Cartn_z 14.593 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.4 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #