data_6X5L
#
_model_server_result.job_id            XEZ-f4Uvzi2oRs-QJNLIdg 
_model_server_result.datetime_utc      '2024-12-21 12:50:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x5l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":308}' 
#
_entry.id    6X5L 
#
_exptl.entry_id    6X5L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6X5L 
_cell.length_a            100.56 
_cell.length_b            100.56 
_cell.length_c            98.202 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X5L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 41 1_555 A SG CYS 42 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 A SG CYS 109 A CYS 124 1_555 B SG CYS 49 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 A SG CYS 156 A CYS 171 1_555 A SG CYS 170 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf4 A SG CYS 181 A CYS 196 1_555 A SG CYS 209 A CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf5 B SG CYS 5 B CYS 88 1_555 B SG CYS 16 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 12 B CYS 95 1_555 B SG CYS 26 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 B SG CYS 28 B CYS 111 1_555 B SG CYS 41 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc1 A OE1 GLU 55 A GLU 70 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc2 A O ASN 57 A ASN 72 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc3 A O GLU 60 A GLU 75 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 A OE1 GLU 62 A GLU 77 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc5 A OE1 GLU 65 A GLU 80 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc6 D NA NA . A NA 302 1_555 K O HOH . A HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     6X5L 
_atom_sites.fract_transf_matrix[1][1]    0.009944 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009944 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 UQG A 1 301 250 UQG UNL . 
D 4 NA A 1 302 251 NA NA . 
E 5 CIT A 1 303 252 CIT CIT . 
F 5 CIT A 1 304 253 CIT CIT . 
G 5 CIT A 1 305 254 CIT CIT . 
H 5 CIT A 1 306 255 CIT CIT . 
I 6 GOL A 1 307 256 GOL GOL . 
J 6 GOL A 1 308 257 GOL GOL . 
K 7 HOH A 1 401 1345 HOH HOH . 
K 7 HOH A 2 402 1310 HOH HOH . 
K 7 HOH A 3 403 1320 HOH HOH . 
K 7 HOH A 4 404 1266 HOH HOH . 
K 7 HOH A 5 405 1288 HOH HOH . 
K 7 HOH A 6 406 1337 HOH HOH . 
K 7 HOH A 7 407 1339 HOH HOH . 
K 7 HOH A 8 408 1308 HOH HOH . 
K 7 HOH A 9 409 1301 HOH HOH . 
K 7 HOH A 10 410 1298 HOH HOH . 
K 7 HOH A 11 411 1268 HOH HOH . 
K 7 HOH A 12 412 1270 HOH HOH . 
K 7 HOH A 13 413 1264 HOH HOH . 
K 7 HOH A 14 414 1295 HOH HOH . 
K 7 HOH A 15 415 1286 HOH HOH . 
K 7 HOH A 16 416 1289 HOH HOH . 
K 7 HOH A 17 417 1302 HOH HOH . 
K 7 HOH A 18 418 1262 HOH HOH . 
K 7 HOH A 19 419 1322 HOH HOH . 
K 7 HOH A 20 420 1278 HOH HOH . 
K 7 HOH A 21 421 1276 HOH HOH . 
K 7 HOH A 22 422 1284 HOH HOH . 
K 7 HOH A 23 423 1364 HOH HOH . 
K 7 HOH A 24 424 1312 HOH HOH . 
K 7 HOH A 25 425 1336 HOH HOH . 
K 7 HOH A 26 426 1283 HOH HOH . 
K 7 HOH A 27 427 1279 HOH HOH . 
K 7 HOH A 28 428 1323 HOH HOH . 
K 7 HOH A 29 429 1349 HOH HOH . 
K 7 HOH A 30 430 1317 HOH HOH . 
K 7 HOH A 31 431 1277 HOH HOH . 
K 7 HOH A 32 432 1272 HOH HOH . 
K 7 HOH A 33 433 1285 HOH HOH . 
K 7 HOH A 34 434 1265 HOH HOH . 
K 7 HOH A 35 435 1354 HOH HOH . 
K 7 HOH A 36 436 1313 HOH HOH . 
K 7 HOH A 37 437 1271 HOH HOH . 
K 7 HOH A 38 438 1267 HOH HOH . 
K 7 HOH A 39 439 1330 HOH HOH . 
K 7 HOH A 40 440 1261 HOH HOH . 
K 7 HOH A 41 441 1257 HOH HOH . 
K 7 HOH A 42 442 1355 HOH HOH . 
K 7 HOH A 43 443 1314 HOH HOH . 
K 7 HOH A 44 444 1293 HOH HOH . 
K 7 HOH A 45 445 1357 HOH HOH . 
K 7 HOH A 46 446 1291 HOH HOH . 
K 7 HOH A 47 447 1299 HOH HOH . 
K 7 HOH A 48 448 1287 HOH HOH . 
K 7 HOH A 49 449 1369 HOH HOH . 
K 7 HOH A 50 450 1344 HOH HOH . 
K 7 HOH A 51 451 1269 HOH HOH . 
K 7 HOH A 52 452 1258 HOH HOH . 
K 7 HOH A 53 453 1334 HOH HOH . 
K 7 HOH A 54 454 1300 HOH HOH . 
K 7 HOH A 55 455 1275 HOH HOH . 
K 7 HOH A 56 456 1328 HOH HOH . 
K 7 HOH A 57 457 1324 HOH HOH . 
K 7 HOH A 58 458 1296 HOH HOH . 
K 7 HOH A 59 459 1315 HOH HOH . 
K 7 HOH A 60 460 1305 HOH HOH . 
K 7 HOH A 61 461 1259 HOH HOH . 
K 7 HOH A 62 462 1319 HOH HOH . 
K 7 HOH A 63 463 1281 HOH HOH . 
K 7 HOH A 64 464 1342 HOH HOH . 
K 7 HOH A 65 465 1366 HOH HOH . 
K 7 HOH A 66 466 1316 HOH HOH . 
K 7 HOH A 67 467 1346 HOH HOH . 
K 7 HOH A 68 468 1273 HOH HOH . 
K 7 HOH A 69 469 1318 HOH HOH . 
K 7 HOH A 70 470 1348 HOH HOH . 
K 7 HOH A 71 471 1263 HOH HOH . 
K 7 HOH A 72 472 1329 HOH HOH . 
K 7 HOH A 73 473 1304 HOH HOH . 
K 7 HOH A 74 474 1358 HOH HOH . 
K 7 HOH A 75 475 1321 HOH HOH . 
K 7 HOH A 76 476 1309 HOH HOH . 
K 7 HOH A 77 477 1306 HOH HOH . 
K 7 HOH A 78 478 1368 HOH HOH . 
K 7 HOH A 79 479 1294 HOH HOH . 
K 7 HOH A 80 480 1326 HOH HOH . 
K 7 HOH A 81 481 1353 HOH HOH . 
K 7 HOH A 82 482 1274 HOH HOH . 
K 7 HOH A 83 483 1343 HOH HOH . 
K 7 HOH A 84 484 1365 HOH HOH . 
K 7 HOH A 85 485 1359 HOH HOH . 
K 7 HOH A 86 486 1327 HOH HOH . 
K 7 HOH A 87 487 1351 HOH HOH . 
K 7 HOH A 88 488 1341 HOH HOH . 
K 7 HOH A 89 489 1297 HOH HOH . 
K 7 HOH A 90 490 1338 HOH HOH . 
K 7 HOH A 91 491 1290 HOH HOH . 
K 7 HOH A 92 492 1360 HOH HOH . 
K 7 HOH A 93 493 1335 HOH HOH . 
K 7 HOH A 94 494 1378 HOH HOH . 
K 7 HOH A 95 495 1371 HOH HOH . 
K 7 HOH A 96 496 1260 HOH HOH . 
K 7 HOH A 97 497 1325 HOH HOH . 
K 7 HOH A 98 498 1340 HOH HOH . 
K 7 HOH A 99 499 1332 HOH HOH . 
K 7 HOH A 100 500 1307 HOH HOH . 
K 7 HOH A 101 501 1379 HOH HOH . 
K 7 HOH A 102 502 1311 HOH HOH . 
K 7 HOH A 103 503 1303 HOH HOH . 
K 7 HOH A 104 504 1363 HOH HOH . 
K 7 HOH A 105 505 1352 HOH HOH . 
K 7 HOH A 106 506 1333 HOH HOH . 
K 7 HOH A 107 507 1362 HOH HOH . 
K 7 HOH A 108 508 1356 HOH HOH . 
K 7 HOH A 109 509 1370 HOH HOH . 
K 7 HOH A 110 510 1282 HOH HOH . 
K 7 HOH A 111 511 1377 HOH HOH . 
K 7 HOH A 112 512 1372 HOH HOH . 
K 7 HOH A 113 513 1376 HOH HOH . 
K 7 HOH A 114 514 1361 HOH HOH . 
K 7 HOH A 115 515 1380 HOH HOH . 
K 7 HOH A 116 516 1347 HOH HOH . 
K 7 HOH A 117 517 1375 HOH HOH . 
K 7 HOH A 118 518 1350 HOH HOH . 
K 7 HOH A 119 519 1149 HOH HOH . 
K 7 HOH A 120 520 1373 HOH HOH . 
K 7 HOH A 121 521 1367 HOH HOH . 
L 7 HOH B 1 201 1145 HOH HOH . 
L 7 HOH B 2 202 1148 HOH HOH . 
L 7 HOH B 3 203 1141 HOH HOH . 
L 7 HOH B 4 204 1142 HOH HOH . 
L 7 HOH B 5 205 1144 HOH HOH . 
L 7 HOH B 6 206 1140 HOH HOH . 
L 7 HOH B 7 207 1374 HOH HOH . 
L 7 HOH B 8 208 1143 HOH HOH . 
L 7 HOH B 9 209 1146 HOH HOH . 
L 7 HOH B 10 210 1147 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 6 29.268 -7.752 21.884 1 49.78 ? C1 GOL 308 A 1 
HETATM 2 O O1 GOL . . . J 6 29.412 -6.785 22.91 1 49.57 ? O1 GOL 308 A 1 
HETATM 3 C C2 GOL . . . J 6 28.307 -7.283 20.815 1 49.86 ? C2 GOL 308 A 1 
HETATM 4 O O2 GOL . . . J 6 28.669 -5.976 20.347 1 48.63 ? O2 GOL 308 A 1 
HETATM 5 C C3 GOL . . . J 6 28.375 -8.274 19.676 1 50.79 ? C3 GOL 308 A 1 
HETATM 6 O O3 GOL . . . J 6 27.36 -8.002 18.73 1 51.71 ? O3 GOL 308 A 1 
HETATM 7 H H11 GOL . . . J 6 28.944 -8.705 22.299 0 63.6 ? H11 GOL 308 A 1 
HETATM 8 H H12 GOL . . . J 6 30.242 -7.951 21.438 0 61.61 ? H12 GOL 308 A 1 
HETATM 9 H HO1 GOL . . . J 6 28.624 -6.9 23.503 0 62.07 ? HO1 GOL 308 A 1 
HETATM 10 H H2 GOL . . . J 6 27.296 -7.137 21.19 0 62.56 ? H2 GOL 308 A 1 
HETATM 11 H HO2 GOL . . . J 6 29.636 -5.837 20.524 0 57.94 ? HO2 GOL 308 A 1 
HETATM 12 H H31 GOL . . . J 6 28.289 -9.295 20.045 0 65.12 ? H31 GOL 308 A 1 
HETATM 13 H H32 GOL . . . J 6 29.349 -8.217 19.192 0 62.93 ? H32 GOL 308 A 1 
HETATM 14 H HO3 GOL . . . J 6 27.586 -7.12 18.333 0 63.68 ? HO3 GOL 308 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#