data_6X5Q # _model_server_result.job_id ZnbFwHjMXNV17SahQRhSww _model_server_result.datetime_utc '2024-11-22 14:58:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 6X5Q # _exptl.entry_id 6X5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X5Q _cell.length_a 42.629 _cell.length_b 57.456 _cell.length_c 107.707 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6X5Q _atom_sites.fract_transf_matrix[1][1] 0.023458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 2 GOL GOL . D 3 GOL A 1 302 3 GOL GOL . E 3 GOL B 1 901 1 GOL GOL . F 4 HOH A 1 401 80 HOH HOH . F 4 HOH A 2 402 94 HOH HOH . F 4 HOH A 3 403 110 HOH HOH . F 4 HOH A 4 404 62 HOH HOH . F 4 HOH A 5 405 16 HOH HOH . F 4 HOH A 6 406 35 HOH HOH . F 4 HOH A 7 407 70 HOH HOH . F 4 HOH A 8 408 82 HOH HOH . F 4 HOH A 9 409 49 HOH HOH . F 4 HOH A 10 410 92 HOH HOH . F 4 HOH A 11 411 3 HOH HOH . F 4 HOH A 12 412 61 HOH HOH . F 4 HOH A 13 413 39 HOH HOH . F 4 HOH A 14 414 4 HOH HOH . F 4 HOH A 15 415 7 HOH HOH . F 4 HOH A 16 416 81 HOH HOH . F 4 HOH A 17 417 56 HOH HOH . F 4 HOH A 18 418 101 HOH HOH . F 4 HOH A 19 419 55 HOH HOH . F 4 HOH A 20 420 60 HOH HOH . F 4 HOH A 21 421 87 HOH HOH . F 4 HOH A 22 422 37 HOH HOH . F 4 HOH A 23 423 108 HOH HOH . F 4 HOH A 24 424 44 HOH HOH . F 4 HOH A 25 425 11 HOH HOH . F 4 HOH A 26 426 84 HOH HOH . F 4 HOH A 27 427 9 HOH HOH . F 4 HOH A 28 428 27 HOH HOH . F 4 HOH A 29 429 19 HOH HOH . F 4 HOH A 30 430 96 HOH HOH . F 4 HOH A 31 431 99 HOH HOH . F 4 HOH A 32 432 104 HOH HOH . F 4 HOH A 33 433 45 HOH HOH . F 4 HOH A 34 434 14 HOH HOH . F 4 HOH A 35 435 18 HOH HOH . F 4 HOH A 36 436 47 HOH HOH . F 4 HOH A 37 437 98 HOH HOH . F 4 HOH A 38 438 102 HOH HOH . F 4 HOH A 39 439 32 HOH HOH . F 4 HOH A 40 440 30 HOH HOH . F 4 HOH A 41 441 85 HOH HOH . F 4 HOH A 42 442 40 HOH HOH . F 4 HOH A 43 443 76 HOH HOH . F 4 HOH A 44 444 21 HOH HOH . F 4 HOH A 45 445 86 HOH HOH . F 4 HOH A 46 446 38 HOH HOH . F 4 HOH A 47 447 88 HOH HOH . F 4 HOH A 48 448 8 HOH HOH . F 4 HOH A 49 449 77 HOH HOH . F 4 HOH A 50 450 24 HOH HOH . F 4 HOH A 51 451 48 HOH HOH . F 4 HOH A 52 452 71 HOH HOH . F 4 HOH A 53 453 34 HOH HOH . F 4 HOH A 54 454 97 HOH HOH . F 4 HOH A 55 455 42 HOH HOH . F 4 HOH A 56 456 41 HOH HOH . F 4 HOH A 57 457 51 HOH HOH . F 4 HOH A 58 458 2 HOH HOH . F 4 HOH A 59 459 78 HOH HOH . F 4 HOH A 60 460 23 HOH HOH . F 4 HOH A 61 461 15 HOH HOH . F 4 HOH A 62 462 17 HOH HOH . F 4 HOH A 63 463 89 HOH HOH . F 4 HOH A 64 464 28 HOH HOH . F 4 HOH A 65 465 20 HOH HOH . F 4 HOH A 66 466 79 HOH HOH . F 4 HOH A 67 467 64 HOH HOH . F 4 HOH A 68 468 12 HOH HOH . F 4 HOH A 69 469 93 HOH HOH . F 4 HOH A 70 470 106 HOH HOH . F 4 HOH A 71 471 46 HOH HOH . F 4 HOH A 72 472 29 HOH HOH . F 4 HOH A 73 473 25 HOH HOH . F 4 HOH A 74 474 103 HOH HOH . F 4 HOH A 75 475 65 HOH HOH . F 4 HOH A 76 476 67 HOH HOH . F 4 HOH A 77 477 83 HOH HOH . F 4 HOH A 78 478 72 HOH HOH . F 4 HOH A 79 479 33 HOH HOH . F 4 HOH A 80 480 109 HOH HOH . F 4 HOH A 81 481 68 HOH HOH . F 4 HOH A 82 482 59 HOH HOH . F 4 HOH A 83 483 73 HOH HOH . F 4 HOH A 84 484 107 HOH HOH . F 4 HOH A 85 485 69 HOH HOH . G 4 HOH B 1 1001 90 HOH HOH . G 4 HOH B 2 1002 95 HOH HOH . G 4 HOH B 3 1003 13 HOH HOH . G 4 HOH B 4 1004 6 HOH HOH . G 4 HOH B 5 1005 5 HOH HOH . G 4 HOH B 6 1006 91 HOH HOH . G 4 HOH B 7 1007 36 HOH HOH . G 4 HOH B 8 1008 57 HOH HOH . G 4 HOH B 9 1009 100 HOH HOH . G 4 HOH B 10 1010 26 HOH HOH . G 4 HOH B 11 1011 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -3.898 -8.778 31.427 1 23.41 ? C1 GOL 901 B 1 HETATM 2 O O1 GOL . . . E 3 -3.952 -7.602 32.223 1 23.73 ? O1 GOL 901 B 1 HETATM 3 C C2 GOL . . . E 3 -3.272 -8.512 30.074 1 21.53 ? C2 GOL 901 B 1 HETATM 4 O O2 GOL . . . E 3 -4.173 -7.71 29.311 1 18.73 ? O2 GOL 901 B 1 HETATM 5 C C3 GOL . . . E 3 -1.908 -7.863 30.191 1 23.1 ? C3 GOL 901 B 1 HETATM 6 O O3 GOL . . . E 3 -1.233 -7.702 28.946 1 21.63 ? O3 GOL 901 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #