data_6X5U # _model_server_result.job_id ggl-61JpeggfuBGA6EmRLw _model_server_result.datetime_utc '2025-08-30 23:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":600}' # _entry.id 6X5U # _exptl.entry_id 6X5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X5U _cell.length_a 154.02 _cell.length_b 154.02 _cell.length_c 466.92 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q,R,S,AA,BA 1 1 C,D,K,L,T,U,V,CA,DA 2 1 G,O,Y,GA 3 1 E,M,W,EA 3 2 H,P,Z,HA 4 1 F,N,X,FA 4 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_445 x-1,y-1,z 1 0 0 0 1 0 0 0 1 -77.01 -133.385233 0 3 'crystal symmetry operation' 6_654 x-y+1,x,z-1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 154.02 0 -77.82 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Q N N ? 6 S N N ? 6 T N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 3 2 1 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 3 3 2 MAN BMA C1 O1 . O3 HO3 . sing 8 ? 3 4 3 NAG MAN C1 O1 . O2 HO2 . sing 9 ? 3 5 2 MAN BMA C1 O1 . O6 HO6 . sing 10 ? 4 2 1 BMA NAG C1 O1 . O4 HO4 . sing 11 ? 4 3 2 MAN BMA C1 O1 . O3 HO3 . sing 12 ? 4 4 3 NAG MAN C1 O1 . O2 HO2 . sing 13 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 14 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 15 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 16 ? 5 5 4 NAG MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n I NAG 1 I 1 NAG A 701 NAG 2 n I NAG 2 I 2 NAG A 702 NAG 2 n I BMA 3 I 3 BMA A 703 BMA 2 n I MAN 4 I 4 MAN A 704 MAN 2 n I NAG 5 I 5 NAG A 705 NAG 2 n I MAN 6 I 6 MAN A 706 MAN 3 n J NAG 1 J 1 NAG B 702 NAG 3 n J BMA 2 J 2 BMA B 703 BMA 3 n J MAN 3 J 3 MAN B 704 MAN 3 n J NAG 4 J 4 NAG B 705 NAG 3 n J MAN 5 J 5 MAN B 706 MAN 2 n K NAG 1 K 1 NAG C 701 NAG 2 n K NAG 2 K 2 NAG C 702 NAG 2 n K BMA 3 K 3 BMA C 703 BMA 2 n K MAN 4 K 4 MAN C 704 MAN 2 n K NAG 5 K 5 NAG C 705 NAG 2 n K MAN 6 K 6 MAN C 706 MAN 3 n L NAG 1 L 1 NAG D 702 NAG 3 n L BMA 2 L 2 BMA D 703 BMA 3 n L MAN 3 L 3 MAN D 704 MAN 3 n L NAG 4 L 4 NAG D 705 NAG 3 n L MAN 5 L 5 MAN D 706 MAN 4 n M NAG 1 M 1 NAG E 702 NAG 4 n M BMA 2 M 2 BMA E 703 BMA 4 n M MAN 3 M 3 MAN E 704 MAN 4 n M NAG 4 M 4 NAG E 705 NAG 3 n N NAG 1 N 1 NAG F 702 NAG 3 n N BMA 2 N 2 BMA F 703 BMA 3 n N MAN 3 N 3 MAN F 704 MAN 3 n N NAG 4 N 4 NAG F 705 NAG 3 n N MAN 5 N 5 MAN F 706 MAN 5 n O NAG 1 O 1 NAG G 701 NAG 5 n O NAG 2 O 2 NAG G 702 NAG 5 n O BMA 3 O 3 BMA G 703 BMA 5 n O MAN 4 O 4 MAN G 704 MAN 5 n O NAG 5 O 5 NAG G 705 NAG 2 n P NAG 1 P 1 NAG H 701 NAG 2 n P NAG 2 P 2 NAG H 702 NAG 2 n P BMA 3 P 3 BMA H 703 BMA 2 n P MAN 4 P 4 MAN H 704 MAN 2 n P NAG 5 P 5 NAG H 705 NAG 2 n P MAN 6 P 6 MAN H 706 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 164 A CYS 204 1_555 A SG CYS 226 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 172 A CYS 212 1_555 A SG CYS 190 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 178 A CYS 218 1_555 A SG CYS 182 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 425 A CYS 465 1_555 A SG CYS 432 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 B SG CYS 164 B CYS 204 1_555 B SG CYS 226 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 172 B CYS 212 1_555 B SG CYS 190 B CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 178 B CYS 218 1_555 B SG CYS 182 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 425 B CYS 465 1_555 B SG CYS 432 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 164 C CYS 204 1_555 C SG CYS 226 C CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 C SG CYS 172 C CYS 212 1_555 C SG CYS 190 C CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 C SG CYS 178 C CYS 218 1_555 C SG CYS 182 C CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 C SG CYS 425 C CYS 465 1_555 C SG CYS 432 C CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf13 D SG CYS 164 D CYS 204 1_555 D SG CYS 226 D CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 D SG CYS 172 D CYS 212 1_555 D SG CYS 190 D CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 D SG CYS 178 D CYS 218 1_555 D SG CYS 182 D CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 D SG CYS 425 D CYS 465 1_555 D SG CYS 432 D CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf17 E SG CYS 164 E CYS 204 1_555 E SG CYS 226 E CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 E SG CYS 172 E CYS 212 1_555 E SG CYS 190 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 E SG CYS 178 E CYS 218 1_555 E SG CYS 182 E CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 E SG CYS 425 E CYS 465 1_555 E SG CYS 432 E CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf21 F SG CYS 164 F CYS 204 1_555 F SG CYS 226 F CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf22 F SG CYS 172 F CYS 212 1_555 F SG CYS 190 F CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf23 F SG CYS 178 F CYS 218 1_555 F SG CYS 182 F CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 F SG CYS 425 F CYS 465 1_555 F SG CYS 432 F CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf25 G SG CYS 164 G CYS 204 1_555 G SG CYS 226 G CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf26 G SG CYS 172 G CYS 212 1_555 G SG CYS 190 G CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf27 G SG CYS 178 G CYS 218 1_555 G SG CYS 182 G CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf28 G SG CYS 425 G CYS 465 1_555 G SG CYS 432 G CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf29 H SG CYS 164 H CYS 204 1_555 H SG CYS 226 H CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf30 H SG CYS 172 H CYS 212 1_555 H SG CYS 190 H CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf31 H SG CYS 178 H CYS 218 1_555 H SG CYS 182 H CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf32 H SG CYS 425 H CYS 465 1_555 H SG CYS 432 H CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 R ND2 ASN . A ASN 700 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 U ND2 ASN . C ASN 700 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 I O3 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 I O6 BMA . I BMA 3 1_555 I C1 MAN . I MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 I O2 MAN . I MAN 4 1_555 I C1 NAG . I NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 J O4 NAG . J NAG 1 1_555 J C1 BMA . J BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 J O3 BMA . J BMA 2 1_555 J C1 MAN . J MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 J O6 BMA . J BMA 2 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 J O2 MAN . J MAN 3 1_555 J C1 NAG . J NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale14 K O3 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale16 K O2 MAN . K MAN 4 1_555 K C1 NAG . K NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale17 L O4 NAG . L NAG 1 1_555 L C1 BMA . L BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 L O3 BMA . L BMA 2 1_555 L C1 MAN . L MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale19 L O6 BMA . L BMA 2 1_555 L C1 MAN . L MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale20 L O2 MAN . L MAN 3 1_555 L C1 NAG . L NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale21 M O4 NAG . M NAG 1 1_555 M C1 BMA . M BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale22 M O3 BMA . M BMA 2 1_555 M C1 MAN . M MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale23 M O2 MAN . M MAN 3 1_555 M C1 NAG . M NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale24 N O4 NAG . N NAG 1 1_555 N C1 BMA . N BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale25 N O3 BMA . N BMA 2 1_555 N C1 MAN . N MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale26 N O6 BMA . N BMA 2 1_555 N C1 MAN . N MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale27 N O2 MAN . N MAN 3 1_555 N C1 NAG . N NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale28 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale29 O O4 NAG . O NAG 2 1_555 O C1 BMA . O BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale30 O O3 BMA . O BMA 3 1_555 O C1 MAN . O MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale31 O O2 MAN . O MAN 4 1_555 O C1 NAG . O NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale32 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale33 P O4 NAG . P NAG 2 1_555 P C1 BMA . P BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale34 P O3 BMA . P BMA 3 1_555 P C1 MAN . P MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale35 P O6 BMA . P BMA 3 1_555 P C1 MAN . P MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale36 P O2 MAN . P MAN 4 1_555 P C1 NAG . P NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 107 n n PB O2B GDP sing 108 n n PB O3B GDP sing 109 n n PB O3A GDP sing 110 n n O2B HOB2 GDP sing 111 n n O3B HOB3 GDP sing 112 n n O3A PA GDP sing 113 n n PA O1A GDP doub 114 n n PA O2A GDP sing 115 n n PA O5' GDP sing 116 n n O2A HOA2 GDP sing 117 n n O5' C5' GDP sing 118 n n C5' C4' GDP sing 119 n n C5' H5' GDP sing 120 n n C5' "H5''" GDP sing 121 n n C4' O4' GDP sing 122 n n C4' C3' GDP sing 123 n n C4' H4' GDP sing 124 n n O4' C1' GDP sing 125 n n C3' O3' GDP sing 126 n n C3' C2' GDP sing 127 n n C3' H3' GDP sing 128 n n O3' HO3' GDP sing 129 n n C2' O2' GDP sing 130 n n C2' C1' GDP sing 131 n n C2' H2' GDP sing 132 n n O2' HO2' GDP sing 133 n n C1' N9 GDP sing 134 n n C1' H1' GDP sing 135 n n N9 C8 GDP sing 136 n y N9 C4 GDP sing 137 n y C8 N7 GDP doub 138 n y C8 H8 GDP sing 139 n n N7 C5 GDP sing 140 n y C5 C6 GDP sing 141 n n C5 C4 GDP doub 142 n y C6 O6 GDP doub 143 n n C6 N1 GDP sing 144 n n N1 C2 GDP sing 145 n n N1 HN1 GDP sing 146 n n C2 N2 GDP sing 147 n n C2 N3 GDP doub 148 n n N2 HN21 GDP sing 149 n n N2 HN22 GDP sing 150 n n N3 C4 GDP sing 151 n n # _atom_sites.entry_id 6X5U _atom_sites.fract_transf_matrix[1][1] 0.006493 _atom_sites.fract_transf_matrix[1][2] 0.003749 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 6 GDP A 1 600 600 GDP GDP . R 7 ASN A 1 700 700 ASN ASN . S 6 GDP B 1 600 600 GDP GDP . T 6 GDP C 1 600 600 GDP GDP . U 7 ASN C 1 700 700 ASN ASN . V 6 GDP D 1 600 600 GDP GDP . W 6 GDP E 1 600 600 GDP GDP . X 6 GDP F 1 600 600 GDP GDP . Y 6 GDP G 1 600 600 GDP GDP . Z 6 GDP H 1 600 600 GDP GDP . AA 8 HOH A 1 801 128 HOH HOH . AA 8 HOH A 2 802 216 HOH HOH . AA 8 HOH A 3 803 151 HOH HOH . AA 8 HOH A 4 804 101 HOH HOH . AA 8 HOH A 5 805 33 HOH HOH . AA 8 HOH A 6 806 207 HOH HOH . AA 8 HOH A 7 807 28 HOH HOH . AA 8 HOH A 8 808 255 HOH HOH . AA 8 HOH A 9 809 184 HOH HOH . AA 8 HOH A 10 810 46 HOH HOH . AA 8 HOH A 11 811 108 HOH HOH . AA 8 HOH A 12 812 4 HOH HOH . AA 8 HOH A 13 813 113 HOH HOH . AA 8 HOH A 14 814 95 HOH HOH . AA 8 HOH A 15 815 94 HOH HOH . AA 8 HOH A 16 816 119 HOH HOH . AA 8 HOH A 17 817 18 HOH HOH . AA 8 HOH A 18 818 3 HOH HOH . AA 8 HOH A 19 819 251 HOH HOH . AA 8 HOH A 20 820 112 HOH HOH . AA 8 HOH A 21 821 53 HOH HOH . AA 8 HOH A 22 822 114 HOH HOH . AA 8 HOH A 23 823 261 HOH HOH . AA 8 HOH A 24 824 220 HOH HOH . AA 8 HOH A 25 825 197 HOH HOH . AA 8 HOH A 26 826 57 HOH HOH . AA 8 HOH A 27 827 13 HOH HOH . AA 8 HOH A 28 828 135 HOH HOH . AA 8 HOH A 29 829 35 HOH HOH . AA 8 HOH A 30 830 204 HOH HOH . AA 8 HOH A 31 831 167 HOH HOH . AA 8 HOH A 32 832 226 HOH HOH . AA 8 HOH A 33 833 131 HOH HOH . AA 8 HOH A 34 834 166 HOH HOH . BA 8 HOH B 1 801 157 HOH HOH . BA 8 HOH B 2 802 156 HOH HOH . BA 8 HOH B 3 803 77 HOH HOH . BA 8 HOH B 4 804 7 HOH HOH . BA 8 HOH B 5 805 181 HOH HOH . BA 8 HOH B 6 806 175 HOH HOH . BA 8 HOH B 7 807 225 HOH HOH . BA 8 HOH B 8 808 118 HOH HOH . BA 8 HOH B 9 809 68 HOH HOH . BA 8 HOH B 10 810 215 HOH HOH . BA 8 HOH B 11 811 16 HOH HOH . BA 8 HOH B 12 812 174 HOH HOH . BA 8 HOH B 13 813 147 HOH HOH . BA 8 HOH B 14 814 52 HOH HOH . BA 8 HOH B 15 815 2 HOH HOH . BA 8 HOH B 16 816 123 HOH HOH . BA 8 HOH B 17 817 17 HOH HOH . BA 8 HOH B 18 818 31 HOH HOH . BA 8 HOH B 19 819 171 HOH HOH . BA 8 HOH B 20 820 64 HOH HOH . BA 8 HOH B 21 821 84 HOH HOH . BA 8 HOH B 22 822 265 HOH HOH . BA 8 HOH B 23 823 40 HOH HOH . BA 8 HOH B 24 824 191 HOH HOH . BA 8 HOH B 25 825 182 HOH HOH . BA 8 HOH B 26 826 230 HOH HOH . BA 8 HOH B 27 827 194 HOH HOH . BA 8 HOH B 28 828 129 HOH HOH . BA 8 HOH B 29 829 24 HOH HOH . BA 8 HOH B 30 830 170 HOH HOH . BA 8 HOH B 31 831 224 HOH HOH . BA 8 HOH B 32 832 267 HOH HOH . BA 8 HOH B 33 833 210 HOH HOH . BA 8 HOH B 34 834 161 HOH HOH . CA 8 HOH C 1 801 6 HOH HOH . CA 8 HOH C 2 802 91 HOH HOH . CA 8 HOH C 3 803 132 HOH HOH . CA 8 HOH C 4 804 8 HOH HOH . CA 8 HOH C 5 805 63 HOH HOH . CA 8 HOH C 6 806 146 HOH HOH . CA 8 HOH C 7 807 234 HOH HOH . CA 8 HOH C 8 808 99 HOH HOH . CA 8 HOH C 9 809 188 HOH HOH . CA 8 HOH C 10 810 58 HOH HOH . CA 8 HOH C 11 811 29 HOH HOH . CA 8 HOH C 12 812 70 HOH HOH . CA 8 HOH C 13 813 66 HOH HOH . CA 8 HOH C 14 814 85 HOH HOH . CA 8 HOH C 15 815 103 HOH HOH . CA 8 HOH C 16 816 115 HOH HOH . CA 8 HOH C 17 817 102 HOH HOH . CA 8 HOH C 18 818 139 HOH HOH . CA 8 HOH C 19 819 137 HOH HOH . CA 8 HOH C 20 820 5 HOH HOH . CA 8 HOH C 21 821 100 HOH HOH . CA 8 HOH C 22 822 54 HOH HOH . CA 8 HOH C 23 823 110 HOH HOH . CA 8 HOH C 24 824 249 HOH HOH . CA 8 HOH C 25 825 55 HOH HOH . CA 8 HOH C 26 826 196 HOH HOH . CA 8 HOH C 27 827 257 HOH HOH . CA 8 HOH C 28 828 227 HOH HOH . CA 8 HOH C 29 829 246 HOH HOH . CA 8 HOH C 30 830 60 HOH HOH . CA 8 HOH C 31 831 260 HOH HOH . CA 8 HOH C 32 832 143 HOH HOH . CA 8 HOH C 33 833 78 HOH HOH . DA 8 HOH D 1 801 233 HOH HOH . DA 8 HOH D 2 802 88 HOH HOH . DA 8 HOH D 3 803 254 HOH HOH . DA 8 HOH D 4 804 193 HOH HOH . DA 8 HOH D 5 805 15 HOH HOH . DA 8 HOH D 6 806 120 HOH HOH . DA 8 HOH D 7 807 111 HOH HOH . DA 8 HOH D 8 808 212 HOH HOH . DA 8 HOH D 9 809 253 HOH HOH . DA 8 HOH D 10 810 71 HOH HOH . DA 8 HOH D 11 811 106 HOH HOH . DA 8 HOH D 12 812 87 HOH HOH . DA 8 HOH D 13 813 205 HOH HOH . DA 8 HOH D 14 814 169 HOH HOH . DA 8 HOH D 15 815 195 HOH HOH . DA 8 HOH D 16 816 76 HOH HOH . DA 8 HOH D 17 817 42 HOH HOH . DA 8 HOH D 18 818 148 HOH HOH . DA 8 HOH D 19 819 192 HOH HOH . DA 8 HOH D 20 820 152 HOH HOH . DA 8 HOH D 21 821 9 HOH HOH . DA 8 HOH D 22 822 21 HOH HOH . DA 8 HOH D 23 823 241 HOH HOH . DA 8 HOH D 24 824 122 HOH HOH . DA 8 HOH D 25 825 199 HOH HOH . DA 8 HOH D 26 826 59 HOH HOH . DA 8 HOH D 27 827 263 HOH HOH . DA 8 HOH D 28 828 153 HOH HOH . DA 8 HOH D 29 829 89 HOH HOH . DA 8 HOH D 30 830 43 HOH HOH . DA 8 HOH D 31 831 159 HOH HOH . EA 8 HOH E 1 801 245 HOH HOH . EA 8 HOH E 2 802 154 HOH HOH . EA 8 HOH E 3 803 127 HOH HOH . EA 8 HOH E 4 804 140 HOH HOH . EA 8 HOH E 5 805 19 HOH HOH . EA 8 HOH E 6 806 138 HOH HOH . EA 8 HOH E 7 807 80 HOH HOH . EA 8 HOH E 8 808 83 HOH HOH . EA 8 HOH E 9 809 259 HOH HOH . EA 8 HOH E 10 810 93 HOH HOH . EA 8 HOH E 11 811 74 HOH HOH . EA 8 HOH E 12 812 221 HOH HOH . EA 8 HOH E 13 813 134 HOH HOH . EA 8 HOH E 14 814 92 HOH HOH . EA 8 HOH E 15 815 243 HOH HOH . EA 8 HOH E 16 816 190 HOH HOH . EA 8 HOH E 17 817 179 HOH HOH . EA 8 HOH E 18 818 213 HOH HOH . EA 8 HOH E 19 819 209 HOH HOH . EA 8 HOH E 20 820 201 HOH HOH . EA 8 HOH E 21 821 252 HOH HOH . EA 8 HOH E 22 822 150 HOH HOH . EA 8 HOH E 23 823 90 HOH HOH . EA 8 HOH E 24 824 160 HOH HOH . EA 8 HOH E 25 825 165 HOH HOH . EA 8 HOH E 26 826 223 HOH HOH . EA 8 HOH E 27 827 237 HOH HOH . EA 8 HOH E 28 828 198 HOH HOH . FA 8 HOH F 1 801 27 HOH HOH . FA 8 HOH F 2 802 219 HOH HOH . FA 8 HOH F 3 803 177 HOH HOH . FA 8 HOH F 4 804 262 HOH HOH . FA 8 HOH F 5 805 37 HOH HOH . FA 8 HOH F 6 806 178 HOH HOH . FA 8 HOH F 7 807 47 HOH HOH . FA 8 HOH F 8 808 149 HOH HOH . FA 8 HOH F 9 809 97 HOH HOH . FA 8 HOH F 10 810 79 HOH HOH . FA 8 HOH F 11 811 173 HOH HOH . FA 8 HOH F 12 812 75 HOH HOH . FA 8 HOH F 13 813 126 HOH HOH . FA 8 HOH F 14 814 98 HOH HOH . FA 8 HOH F 15 815 10 HOH HOH . FA 8 HOH F 16 816 121 HOH HOH . FA 8 HOH F 17 817 155 HOH HOH . FA 8 HOH F 18 818 176 HOH HOH . FA 8 HOH F 19 819 69 HOH HOH . FA 8 HOH F 20 820 107 HOH HOH . FA 8 HOH F 21 821 238 HOH HOH . FA 8 HOH F 22 822 20 HOH HOH . FA 8 HOH F 23 823 168 HOH HOH . FA 8 HOH F 24 824 34 HOH HOH . FA 8 HOH F 25 825 183 HOH HOH . FA 8 HOH F 26 826 228 HOH HOH . FA 8 HOH F 27 827 211 HOH HOH . FA 8 HOH F 28 828 264 HOH HOH . FA 8 HOH F 29 829 239 HOH HOH . FA 8 HOH F 30 830 158 HOH HOH . FA 8 HOH F 31 831 25 HOH HOH . FA 8 HOH F 32 832 96 HOH HOH . FA 8 HOH F 33 833 82 HOH HOH . FA 8 HOH F 34 834 67 HOH HOH . FA 8 HOH F 35 835 164 HOH HOH . FA 8 HOH F 36 836 30 HOH HOH . FA 8 HOH F 37 837 208 HOH HOH . FA 8 HOH F 38 838 56 HOH HOH . FA 8 HOH F 39 839 51 HOH HOH . FA 8 HOH F 40 840 236 HOH HOH . GA 8 HOH G 1 801 38 HOH HOH . GA 8 HOH G 2 802 231 HOH HOH . GA 8 HOH G 3 803 11 HOH HOH . GA 8 HOH G 4 804 73 HOH HOH . GA 8 HOH G 5 805 187 HOH HOH . GA 8 HOH G 6 806 32 HOH HOH . GA 8 HOH G 7 807 116 HOH HOH . GA 8 HOH G 8 808 180 HOH HOH . GA 8 HOH G 9 809 124 HOH HOH . GA 8 HOH G 10 810 1 HOH HOH . GA 8 HOH G 11 811 185 HOH HOH . GA 8 HOH G 12 812 45 HOH HOH . GA 8 HOH G 13 813 229 HOH HOH . GA 8 HOH G 14 814 50 HOH HOH . GA 8 HOH G 15 815 145 HOH HOH . GA 8 HOH G 16 816 136 HOH HOH . GA 8 HOH G 17 817 23 HOH HOH . GA 8 HOH G 18 818 232 HOH HOH . GA 8 HOH G 19 819 162 HOH HOH . GA 8 HOH G 20 820 117 HOH HOH . GA 8 HOH G 21 821 12 HOH HOH . GA 8 HOH G 22 822 218 HOH HOH . GA 8 HOH G 23 823 62 HOH HOH . GA 8 HOH G 24 824 163 HOH HOH . GA 8 HOH G 25 825 36 HOH HOH . HA 8 HOH H 1 801 41 HOH HOH . HA 8 HOH H 2 802 142 HOH HOH . HA 8 HOH H 3 803 214 HOH HOH . HA 8 HOH H 4 804 235 HOH HOH . HA 8 HOH H 5 805 22 HOH HOH . HA 8 HOH H 6 806 65 HOH HOH . HA 8 HOH H 7 807 186 HOH HOH . HA 8 HOH H 8 808 81 HOH HOH . HA 8 HOH H 9 809 203 HOH HOH . HA 8 HOH H 10 810 109 HOH HOH . HA 8 HOH H 11 811 125 HOH HOH . HA 8 HOH H 12 812 250 HOH HOH . HA 8 HOH H 13 813 49 HOH HOH . HA 8 HOH H 14 814 244 HOH HOH . HA 8 HOH H 15 815 144 HOH HOH . HA 8 HOH H 16 816 172 HOH HOH . HA 8 HOH H 17 817 61 HOH HOH . HA 8 HOH H 18 818 14 HOH HOH . HA 8 HOH H 19 819 72 HOH HOH . HA 8 HOH H 20 820 242 HOH HOH . HA 8 HOH H 21 821 222 HOH HOH . HA 8 HOH H 22 822 266 HOH HOH . HA 8 HOH H 23 823 86 HOH HOH . HA 8 HOH H 24 824 48 HOH HOH . HA 8 HOH H 25 825 105 HOH HOH . HA 8 HOH H 26 826 104 HOH HOH . HA 8 HOH H 27 827 200 HOH HOH . HA 8 HOH H 28 828 256 HOH HOH . HA 8 HOH H 29 829 248 HOH HOH . HA 8 HOH H 30 830 26 HOH HOH . HA 8 HOH H 31 831 217 HOH HOH . HA 8 HOH H 32 832 189 HOH HOH . HA 8 HOH H 33 833 247 HOH HOH . HA 8 HOH H 34 834 39 HOH HOH . HA 8 HOH H 35 835 130 HOH HOH . HA 8 HOH H 36 836 258 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . W 6 4.431 150.649 -29.04 1 55.86 ? PB GDP 600 E 1 HETATM 2 O O1B GDP . . . W 6 2.99 150.582 -29.756 1 55.9 ? O1B GDP 600 E 1 HETATM 3 O O2B GDP . . . W 6 4.863 152.191 -28.902 1 55.97 ? O2B GDP 600 E 1 HETATM 4 O O3B GDP . . . W 6 4.338 150.039 -27.695 1 53.11 ? O3B GDP 600 E 1 HETATM 5 O O3A GDP . . . W 6 5.526 149.866 -29.923 1 56.27 ? O3A GDP 600 E 1 HETATM 6 P PA GDP . . . W 6 5.498 148.568 -30.878 1 59.62 ? PA GDP 600 E 1 HETATM 7 O O1A GDP . . . W 6 6.846 148.378 -31.455 1 57 ? O1A GDP 600 E 1 HETATM 8 O O2A GDP . . . W 6 5.094 147.265 -30.024 1 61.62 ? O2A GDP 600 E 1 HETATM 9 O O5' GDP . . . W 6 4.43 148.762 -32.068 1 63.23 ? O5' GDP 600 E 1 HETATM 10 C C5' GDP . . . W 6 4.09 150.03 -32.635 1 65.34 ? C5' GDP 600 E 1 HETATM 11 C C4' GDP . . . W 6 4.253 149.974 -34.154 1 65.1 ? C4' GDP 600 E 1 HETATM 12 O O4' GDP . . . W 6 3.701 151.161 -34.751 1 65 ? O4' GDP 600 E 1 HETATM 13 C C3' GDP . . . W 6 5.744 149.983 -34.502 1 63.66 ? C3' GDP 600 E 1 HETATM 14 O O3' GDP . . . W 6 6.26 148.655 -34.526 1 58.95 ? O3' GDP 600 E 1 HETATM 15 C C2' GDP . . . W 6 5.715 150.574 -35.915 1 66.9 ? C2' GDP 600 E 1 HETATM 16 O O2' GDP . . . W 6 5.352 149.569 -36.863 1 69.13 ? O2' GDP 600 E 1 HETATM 17 C C1' GDP . . . W 6 4.599 151.632 -35.781 1 65.83 ? C1' GDP 600 E 1 HETATM 18 N N9 GDP . . . W 6 5.175 152.906 -35.355 1 65.05 ? N9 GDP 600 E 1 HETATM 19 C C8 GDP . . . W 6 4.875 153.559 -34.196 1 65.16 ? C8 GDP 600 E 1 HETATM 20 N N7 GDP . . . W 6 5.563 154.658 -34.116 1 64.39 ? N7 GDP 600 E 1 HETATM 21 C C5 GDP . . . W 6 6.345 154.77 -35.216 1 66.53 ? C5 GDP 600 E 1 HETATM 22 C C6 GDP . . . W 6 7.274 155.721 -35.669 1 67.6 ? C6 GDP 600 E 1 HETATM 23 O O6 GDP . . . W 6 7.513 156.711 -35.001 1 68.67 ? O6 GDP 600 E 1 HETATM 24 N N1 GDP . . . W 6 7.895 155.519 -36.849 1 65.87 ? N1 GDP 600 E 1 HETATM 25 C C2 GDP . . . W 6 7.625 154.408 -37.591 1 66.19 ? C2 GDP 600 E 1 HETATM 26 N N2 GDP . . . W 6 8.27 154.232 -38.787 1 65.04 ? N2 GDP 600 E 1 HETATM 27 N N3 GDP . . . W 6 6.756 153.505 -37.18 1 68.19 ? N3 GDP 600 E 1 HETATM 28 C C4 GDP . . . W 6 6.107 153.651 -36.017 1 66.9 ? C4 GDP 600 E 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 87 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #