data_6X5X # _model_server_result.job_id SU0g43sLPQ1VoRbYjxEujg _model_server_result.datetime_utc '2024-10-12 12:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6X5X # _exptl.entry_id 6X5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X5X _cell.length_a 70.344 _cell.length_b 70.344 _cell.length_c 97.205 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 116 1_555 A SG CYS 195 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 155 A CYS 155 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 157 A CYS 157 1_555 A SG CYS 162 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc1 A OE1 GLU 8 A GLU 8 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A OD1 ASP 92 A ASP 92 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 A OD2 ASP 92 A ASP 92 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc4 A NE2 HIS 141 A HIS 141 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc5 A NE2 HIS 145 A HIS 145 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc6 A NE2 HIS 151 A HIS 151 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc7 A O CYS 195 A CYS 195 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 A OD1 ASN 198 A ASN 198 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc9 B CA CA . A CA 301 1_555 G O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc10 B CA CA . A CA 301 1_555 G O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc11 C ZN ZN . A ZN 302 1_555 G O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc12 C ZN ZN . A ZN 302 1_555 G O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6X5X _atom_sites.fract_transf_matrix[1][1] 0.014216 _atom_sites.fract_transf_matrix[1][2] 0.008208 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 ZN A 1 302 1 ZN ZN . D 4 PG4 A 1 303 1 PG4 PG4 . E 5 SO4 A 1 304 1 SO4 SO4 . F 5 SO4 A 1 305 2 SO4 SO4 . G 6 HOH A 1 401 165 HOH HOH . G 6 HOH A 2 402 174 HOH HOH . G 6 HOH A 3 403 62 HOH HOH . G 6 HOH A 4 404 156 HOH HOH . G 6 HOH A 5 405 210 HOH HOH . G 6 HOH A 6 406 94 HOH HOH . G 6 HOH A 7 407 3 HOH HOH . G 6 HOH A 8 408 28 HOH HOH . G 6 HOH A 9 409 96 HOH HOH . G 6 HOH A 10 410 10 HOH HOH . G 6 HOH A 11 411 159 HOH HOH . G 6 HOH A 12 412 65 HOH HOH . G 6 HOH A 13 413 54 HOH HOH . G 6 HOH A 14 414 145 HOH HOH . G 6 HOH A 15 415 196 HOH HOH . G 6 HOH A 16 416 87 HOH HOH . G 6 HOH A 17 417 33 HOH HOH . G 6 HOH A 18 418 20 HOH HOH . G 6 HOH A 19 419 188 HOH HOH . G 6 HOH A 20 420 11 HOH HOH . G 6 HOH A 21 421 50 HOH HOH . G 6 HOH A 22 422 30 HOH HOH . G 6 HOH A 23 423 6 HOH HOH . G 6 HOH A 24 424 1 HOH HOH . G 6 HOH A 25 425 131 HOH HOH . G 6 HOH A 26 426 14 HOH HOH . G 6 HOH A 27 427 71 HOH HOH . G 6 HOH A 28 428 16 HOH HOH . G 6 HOH A 29 429 38 HOH HOH . G 6 HOH A 30 430 134 HOH HOH . G 6 HOH A 31 431 15 HOH HOH . G 6 HOH A 32 432 93 HOH HOH . G 6 HOH A 33 433 4 HOH HOH . G 6 HOH A 34 434 64 HOH HOH . G 6 HOH A 35 435 140 HOH HOH . G 6 HOH A 36 436 116 HOH HOH . G 6 HOH A 37 437 154 HOH HOH . G 6 HOH A 38 438 128 HOH HOH . G 6 HOH A 39 439 52 HOH HOH . G 6 HOH A 40 440 40 HOH HOH . G 6 HOH A 41 441 45 HOH HOH . G 6 HOH A 42 442 121 HOH HOH . G 6 HOH A 43 443 161 HOH HOH . G 6 HOH A 44 444 109 HOH HOH . G 6 HOH A 45 445 23 HOH HOH . G 6 HOH A 46 446 88 HOH HOH . G 6 HOH A 47 447 72 HOH HOH . G 6 HOH A 48 448 67 HOH HOH . G 6 HOH A 49 449 120 HOH HOH . G 6 HOH A 50 450 227 HOH HOH . G 6 HOH A 51 451 18 HOH HOH . G 6 HOH A 52 452 9 HOH HOH . G 6 HOH A 53 453 85 HOH HOH . G 6 HOH A 54 454 2 HOH HOH . G 6 HOH A 55 455 43 HOH HOH . G 6 HOH A 56 456 83 HOH HOH . G 6 HOH A 57 457 204 HOH HOH . G 6 HOH A 58 458 66 HOH HOH . G 6 HOH A 59 459 113 HOH HOH . G 6 HOH A 60 460 182 HOH HOH . G 6 HOH A 61 461 102 HOH HOH . G 6 HOH A 62 462 224 HOH HOH . G 6 HOH A 63 463 22 HOH HOH . G 6 HOH A 64 464 68 HOH HOH . G 6 HOH A 65 465 49 HOH HOH . G 6 HOH A 66 466 84 HOH HOH . G 6 HOH A 67 467 112 HOH HOH . G 6 HOH A 68 468 146 HOH HOH . G 6 HOH A 69 469 8 HOH HOH . G 6 HOH A 70 470 77 HOH HOH . G 6 HOH A 71 471 221 HOH HOH . G 6 HOH A 72 472 51 HOH HOH . G 6 HOH A 73 473 148 HOH HOH . G 6 HOH A 74 474 46 HOH HOH . G 6 HOH A 75 475 206 HOH HOH . G 6 HOH A 76 476 13 HOH HOH . G 6 HOH A 77 477 153 HOH HOH . G 6 HOH A 78 478 228 HOH HOH . G 6 HOH A 79 479 12 HOH HOH . G 6 HOH A 80 480 60 HOH HOH . G 6 HOH A 81 481 25 HOH HOH . G 6 HOH A 82 482 73 HOH HOH . G 6 HOH A 83 483 32 HOH HOH . G 6 HOH A 84 484 163 HOH HOH . G 6 HOH A 85 485 226 HOH HOH . G 6 HOH A 86 486 111 HOH HOH . G 6 HOH A 87 487 139 HOH HOH . G 6 HOH A 88 488 55 HOH HOH . G 6 HOH A 89 489 21 HOH HOH . G 6 HOH A 90 490 144 HOH HOH . G 6 HOH A 91 491 103 HOH HOH . G 6 HOH A 92 492 39 HOH HOH . G 6 HOH A 93 493 7 HOH HOH . G 6 HOH A 94 494 31 HOH HOH . G 6 HOH A 95 495 44 HOH HOH . G 6 HOH A 96 496 108 HOH HOH . G 6 HOH A 97 497 147 HOH HOH . G 6 HOH A 98 498 29 HOH HOH . G 6 HOH A 99 499 186 HOH HOH . G 6 HOH A 100 500 114 HOH HOH . G 6 HOH A 101 501 126 HOH HOH . G 6 HOH A 102 502 168 HOH HOH . G 6 HOH A 103 503 17 HOH HOH . G 6 HOH A 104 504 78 HOH HOH . G 6 HOH A 105 505 214 HOH HOH . G 6 HOH A 106 506 80 HOH HOH . G 6 HOH A 107 507 56 HOH HOH . G 6 HOH A 108 508 24 HOH HOH . G 6 HOH A 109 509 86 HOH HOH . G 6 HOH A 110 510 27 HOH HOH . G 6 HOH A 111 511 193 HOH HOH . G 6 HOH A 112 512 35 HOH HOH . G 6 HOH A 113 513 36 HOH HOH . G 6 HOH A 114 514 92 HOH HOH . G 6 HOH A 115 515 91 HOH HOH . G 6 HOH A 116 516 164 HOH HOH . G 6 HOH A 117 517 37 HOH HOH . G 6 HOH A 118 518 59 HOH HOH . G 6 HOH A 119 519 34 HOH HOH . G 6 HOH A 120 520 58 HOH HOH . G 6 HOH A 121 521 122 HOH HOH . G 6 HOH A 122 522 194 HOH HOH . G 6 HOH A 123 523 190 HOH HOH . G 6 HOH A 124 524 149 HOH HOH . G 6 HOH A 125 525 82 HOH HOH . G 6 HOH A 126 526 125 HOH HOH . G 6 HOH A 127 527 137 HOH HOH . G 6 HOH A 128 528 53 HOH HOH . G 6 HOH A 129 529 176 HOH HOH . G 6 HOH A 130 530 115 HOH HOH . G 6 HOH A 131 531 19 HOH HOH . G 6 HOH A 132 532 124 HOH HOH . G 6 HOH A 133 533 89 HOH HOH . G 6 HOH A 134 534 216 HOH HOH . G 6 HOH A 135 535 133 HOH HOH . G 6 HOH A 136 536 104 HOH HOH . G 6 HOH A 137 537 135 HOH HOH . G 6 HOH A 138 538 136 HOH HOH . G 6 HOH A 139 539 61 HOH HOH . G 6 HOH A 140 540 47 HOH HOH . G 6 HOH A 141 541 229 HOH HOH . G 6 HOH A 142 542 205 HOH HOH . G 6 HOH A 143 543 197 HOH HOH . G 6 HOH A 144 544 173 HOH HOH . G 6 HOH A 145 545 41 HOH HOH . G 6 HOH A 146 546 171 HOH HOH . G 6 HOH A 147 547 170 HOH HOH . G 6 HOH A 148 548 26 HOH HOH . G 6 HOH A 149 549 48 HOH HOH . G 6 HOH A 150 550 81 HOH HOH . G 6 HOH A 151 551 123 HOH HOH . G 6 HOH A 152 552 178 HOH HOH . G 6 HOH A 153 553 5 HOH HOH . G 6 HOH A 154 554 132 HOH HOH . G 6 HOH A 155 555 217 HOH HOH . G 6 HOH A 156 556 160 HOH HOH . G 6 HOH A 157 557 155 HOH HOH . G 6 HOH A 158 558 209 HOH HOH . G 6 HOH A 159 559 234 HOH HOH . G 6 HOH A 160 560 142 HOH HOH . G 6 HOH A 161 561 166 HOH HOH . G 6 HOH A 162 562 95 HOH HOH . G 6 HOH A 163 563 152 HOH HOH . G 6 HOH A 164 564 219 HOH HOH . G 6 HOH A 165 565 74 HOH HOH . G 6 HOH A 166 566 107 HOH HOH . G 6 HOH A 167 567 101 HOH HOH . G 6 HOH A 168 568 200 HOH HOH . G 6 HOH A 169 569 232 HOH HOH . G 6 HOH A 170 570 184 HOH HOH . G 6 HOH A 171 571 225 HOH HOH . G 6 HOH A 172 572 167 HOH HOH . G 6 HOH A 173 573 150 HOH HOH . G 6 HOH A 174 574 220 HOH HOH . G 6 HOH A 175 575 130 HOH HOH . G 6 HOH A 176 576 199 HOH HOH . G 6 HOH A 177 577 69 HOH HOH . G 6 HOH A 178 578 99 HOH HOH . G 6 HOH A 179 579 105 HOH HOH . G 6 HOH A 180 580 151 HOH HOH . G 6 HOH A 181 581 208 HOH HOH . G 6 HOH A 182 582 187 HOH HOH . G 6 HOH A 183 583 223 HOH HOH . G 6 HOH A 184 584 90 HOH HOH . G 6 HOH A 185 585 70 HOH HOH . G 6 HOH A 186 586 42 HOH HOH . G 6 HOH A 187 587 79 HOH HOH . G 6 HOH A 188 588 162 HOH HOH . G 6 HOH A 189 589 212 HOH HOH . G 6 HOH A 190 590 141 HOH HOH . G 6 HOH A 191 591 75 HOH HOH . G 6 HOH A 192 592 100 HOH HOH . G 6 HOH A 193 593 207 HOH HOH . G 6 HOH A 194 594 189 HOH HOH . G 6 HOH A 195 595 231 HOH HOH . G 6 HOH A 196 596 222 HOH HOH . G 6 HOH A 197 597 110 HOH HOH . G 6 HOH A 198 598 230 HOH HOH . G 6 HOH A 199 599 218 HOH HOH . G 6 HOH A 200 600 127 HOH HOH . G 6 HOH A 201 601 233 HOH HOH . G 6 HOH A 202 602 198 HOH HOH . G 6 HOH A 203 603 211 HOH HOH . G 6 HOH A 204 604 183 HOH HOH . G 6 HOH A 205 605 180 HOH HOH . G 6 HOH A 206 606 138 HOH HOH . G 6 HOH A 207 607 179 HOH HOH . G 6 HOH A 208 608 118 HOH HOH . G 6 HOH A 209 609 106 HOH HOH . G 6 HOH A 210 610 98 HOH HOH . G 6 HOH A 211 611 181 HOH HOH . G 6 HOH A 212 612 97 HOH HOH . G 6 HOH A 213 613 76 HOH HOH . G 6 HOH A 214 614 202 HOH HOH . G 6 HOH A 215 615 175 HOH HOH . G 6 HOH A 216 616 117 HOH HOH . G 6 HOH A 217 617 213 HOH HOH . G 6 HOH A 218 618 157 HOH HOH . G 6 HOH A 219 619 215 HOH HOH . G 6 HOH A 220 620 143 HOH HOH . G 6 HOH A 221 621 158 HOH HOH . G 6 HOH A 222 622 185 HOH HOH . G 6 HOH A 223 623 129 HOH HOH . G 6 HOH A 224 624 119 HOH HOH . G 6 HOH A 225 625 172 HOH HOH . G 6 HOH A 226 626 203 HOH HOH . G 6 HOH A 227 627 201 HOH HOH . G 6 HOH A 228 628 195 HOH HOH . G 6 HOH A 229 629 169 HOH HOH . G 6 HOH A 230 630 63 HOH HOH . G 6 HOH A 231 631 177 HOH HOH . G 6 HOH A 232 632 192 HOH HOH . G 6 HOH A 233 633 57 HOH HOH . G 6 HOH A 234 634 191 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.151 _atom_site.Cartn_y -27.651 _atom_site.Cartn_z 6.525 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #