data_6X5Y # _model_server_result.job_id Ux5Hv20mCAOzYIvShlO7DQ _model_server_result.datetime_utc '2024-11-05 13:36:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6X5Y # _exptl.entry_id 6X5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-fluoro-N-{1-[5-(2-methylpyrimidin-4-yl)-5,6,7,8-tetrahydro-1,5-naphthyridin-2-yl]cyclopropyl}benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X5Y _cell.length_a 84.94 _cell.length_b 92.157 _cell.length_c 130.126 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 299 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 308 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 299 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 308 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.023 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H22 F N5 O' _chem_comp.formula_weight 403.452 _chem_comp.id URJ _chem_comp.mon_nstd_flag . _chem_comp.name 4-fluoro-N-{1-[5-(2-methylpyrimidin-4-yl)-5,6,7,8-tetrahydro-1,5-naphthyridin-2-yl]cyclopropyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 URJ sing 358 n n C21 C22 URJ sing 359 n n C21 C20 URJ sing 360 n n C28 N30 URJ doub 361 n y C28 N27 URJ sing 362 n y C22 N23 URJ sing 363 n n N30 C24 URJ sing 364 n y C20 C18 URJ sing 365 n n N27 C26 URJ doub 366 n y C24 N23 URJ sing 367 n n C24 C25 URJ doub 368 n y N23 C17 URJ sing 369 n n C18 C17 URJ doub 370 n y C18 N19 URJ sing 371 n y C26 C25 URJ sing 372 n y C17 C16 URJ sing 373 n y N19 C14 URJ doub 374 n y C16 C15 URJ doub 375 n y C14 C15 URJ sing 376 n y C14 C11 URJ sing 377 n n C7 C6 URJ doub 378 n y C7 C2 URJ sing 379 n y C6 C5 URJ sing 380 n y N10 C11 URJ sing 381 n n N10 C8 URJ sing 382 n n C11 C12 URJ sing 383 n n C11 C13 URJ sing 384 n n F1 C2 URJ sing 385 n n C2 C3 URJ doub 386 n y C5 C8 URJ sing 387 n n C5 C4 URJ doub 388 n y C12 C13 URJ sing 389 n n C8 O9 URJ doub 390 n n C3 C4 URJ sing 391 n y C3 H1 URJ sing 392 n n C4 H2 URJ sing 393 n n C6 H3 URJ sing 394 n n C7 H4 URJ sing 395 n n N10 H5 URJ sing 396 n n C12 H6 URJ sing 397 n n C12 H7 URJ sing 398 n n C15 H8 URJ sing 399 n n C16 H9 URJ sing 400 n n C21 H10 URJ sing 401 n n C21 H11 URJ sing 402 n n C13 H12 URJ sing 403 n n C13 H13 URJ sing 404 n n C20 H14 URJ sing 405 n n C20 H15 URJ sing 406 n n C22 H16 URJ sing 407 n n C22 H17 URJ sing 408 n n C25 H18 URJ sing 409 n n C26 H19 URJ sing 410 n n C29 H20 URJ sing 411 n n C29 H21 URJ sing 412 n n C29 H22 URJ sing 413 n n # _atom_sites.entry_id 6X5Y _atom_sites.fract_transf_matrix[1][1] 0.011773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 URJ A 1 501 1 URJ INX . D 2 URJ B 1 501 2 URJ INX . E 3 HOH A 1 601 5 HOH HOH . E 3 HOH A 2 602 6 HOH HOH . E 3 HOH A 3 603 11 HOH HOH . E 3 HOH A 4 604 56 HOH HOH . E 3 HOH A 5 605 48 HOH HOH . E 3 HOH A 6 606 1 HOH HOH . E 3 HOH A 7 607 20 HOH HOH . F 3 HOH B 1 601 52 HOH HOH . F 3 HOH B 2 602 54 HOH HOH . F 3 HOH B 3 603 4 HOH HOH . F 3 HOH B 4 604 50 HOH HOH . F 3 HOH B 5 605 22 HOH HOH . F 3 HOH B 6 606 36 HOH HOH . F 3 HOH B 7 607 49 HOH HOH . F 3 HOH B 8 608 12 HOH HOH . F 3 HOH B 9 609 19 HOH HOH . F 3 HOH B 10 610 3 HOH HOH . F 3 HOH B 11 611 55 HOH HOH . F 3 HOH B 12 612 53 HOH HOH . F 3 HOH B 13 613 8 HOH HOH . F 3 HOH B 14 614 16 HOH HOH . F 3 HOH B 15 615 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 URJ . . . C 2 76.687 16.988 31.347 1 66.86 ? C2 URJ 501 A 1 HETATM 2 C C3 URJ . . . C 2 75.753 17.022 32.388 1 66.26 ? C3 URJ 501 A 1 HETATM 3 C C4 URJ . . . C 2 74.755 16.056 32.469 1 64.65 ? C4 URJ 501 A 1 HETATM 4 C C5 URJ . . . C 2 74.676 15.022 31.502 1 65.36 ? C5 URJ 501 A 1 HETATM 5 C C6 URJ . . . C 2 75.622 15.011 30.449 1 65.22 ? C6 URJ 501 A 1 HETATM 6 C C7 URJ . . . C 2 76.618 15.98 30.384 1 66.43 ? C7 URJ 501 A 1 HETATM 7 C C8 URJ . . . C 2 73.602 13.996 31.572 1 64.42 ? C8 URJ 501 A 1 HETATM 8 O O9 URJ . . . C 2 72.516 14.377 31.981 1 67.09 ? O9 URJ 501 A 1 HETATM 9 N N10 URJ . . . C 2 73.819 12.696 31.19 1 65.32 ? N10 URJ 501 A 1 HETATM 10 C C11 URJ . . . C 2 72.77 11.656 31.209 1 67.97 ? C11 URJ 501 A 1 HETATM 11 C C12 URJ . . . C 2 73.174 10.217 31.541 1 65.06 ? C12 URJ 501 A 1 HETATM 12 C C15 URJ . . . C 2 70.525 12.527 30.513 1 71.89 ? C15 URJ 501 A 1 HETATM 13 C C16 URJ . . . C 2 69.558 12.78 29.538 1 74.21 ? C16 URJ 501 A 1 HETATM 14 C C17 URJ . . . C 2 69.795 12.365 28.212 1 72.66 ? C17 URJ 501 A 1 HETATM 15 C C18 URJ . . . C 2 71.03 11.752 27.925 1 70.91 ? C18 URJ 501 A 1 HETATM 16 C C21 URJ . . . C 2 70.539 12.033 25.414 1 70.94 ? C21 URJ 501 A 1 HETATM 17 C C24 URJ . . . C 2 67.509 12.258 27.11 1 72.58 ? C24 URJ 501 A 1 HETATM 18 F F1 URJ . . . C 2 77.654 17.924 31.265 1 66.35 ? F1 URJ 501 A 1 HETATM 19 C C13 URJ . . . C 2 72.35 11.032 32.542 1 66.99 ? C13 URJ 501 A 1 HETATM 20 C C14 URJ . . . C 2 71.715 11.893 30.155 1 69.7 ? C14 URJ 501 A 1 HETATM 21 N N19 URJ . . . C 2 71.934 11.541 28.891 1 71.32 ? N19 URJ 501 A 1 HETATM 22 C C20 URJ . . . C 2 71.357 11.314 26.512 1 71.67 ? C20 URJ 501 A 1 HETATM 23 C C22 URJ . . . C 2 69.609 13.144 25.954 1 71.5 ? C22 URJ 501 A 1 HETATM 24 N N23 URJ . . . C 2 68.894 12.578 27.134 1 74.19 ? N23 URJ 501 A 1 HETATM 25 C C25 URJ . . . C 2 66.769 11.748 28.218 1 70.8 ? C25 URJ 501 A 1 HETATM 26 C C26 URJ . . . C 2 65.413 11.474 28.064 1 73.13 ? C26 URJ 501 A 1 HETATM 27 N N27 URJ . . . C 2 64.807 11.678 26.891 1 74.08 ? N27 URJ 501 A 1 HETATM 28 C C28 URJ . . . C 2 65.496 12.147 25.861 1 74.16 ? C28 URJ 501 A 1 HETATM 29 C C29 URJ . . . C 2 64.786 12.36 24.551 1 72.42 ? C29 URJ 501 A 1 HETATM 30 N N30 URJ . . . C 2 66.797 12.422 25.967 1 74.67 ? N30 URJ 501 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #