data_6X5Y
#
_model_server_result.job_id            gaacoRZ1edm8Z0vemShmBQ 
_model_server_result.datetime_utc      '2024-11-05 14:06:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x5y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6X5Y 
#
_exptl.entry_id    6X5Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              403.452 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-fluoro-N-{1-[5-(2-methylpyrimidin-4-yl)-5,6,7,8-tetrahydro-1,5-naphthyridin-2-yl]cyclopropyl}benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6X5Y 
_cell.length_a            84.94 
_cell.length_b            92.157 
_cell.length_c            130.126 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X5Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             299 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              308 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             299 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              308 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.023 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C23 H22 F N5 O' 
_chem_comp.formula_weight    403.452 
_chem_comp.id                URJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-fluoro-N-{1-[5-(2-methylpyrimidin-4-yl)-5,6,7,8-tetrahydro-1,5-naphthyridin-2-yl]cyclopropyl}benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C29 C28 URJ sing 358 n n 
C21 C22 URJ sing 359 n n 
C21 C20 URJ sing 360 n n 
C28 N30 URJ doub 361 n y 
C28 N27 URJ sing 362 n y 
C22 N23 URJ sing 363 n n 
N30 C24 URJ sing 364 n y 
C20 C18 URJ sing 365 n n 
N27 C26 URJ doub 366 n y 
C24 N23 URJ sing 367 n n 
C24 C25 URJ doub 368 n y 
N23 C17 URJ sing 369 n n 
C18 C17 URJ doub 370 n y 
C18 N19 URJ sing 371 n y 
C26 C25 URJ sing 372 n y 
C17 C16 URJ sing 373 n y 
N19 C14 URJ doub 374 n y 
C16 C15 URJ doub 375 n y 
C14 C15 URJ sing 376 n y 
C14 C11 URJ sing 377 n n 
C7 C6 URJ doub 378 n y 
C7 C2 URJ sing 379 n y 
C6 C5 URJ sing 380 n y 
N10 C11 URJ sing 381 n n 
N10 C8 URJ sing 382 n n 
C11 C12 URJ sing 383 n n 
C11 C13 URJ sing 384 n n 
F1 C2 URJ sing 385 n n 
C2 C3 URJ doub 386 n y 
C5 C8 URJ sing 387 n n 
C5 C4 URJ doub 388 n y 
C12 C13 URJ sing 389 n n 
C8 O9 URJ doub 390 n n 
C3 C4 URJ sing 391 n y 
C3 H1 URJ sing 392 n n 
C4 H2 URJ sing 393 n n 
C6 H3 URJ sing 394 n n 
C7 H4 URJ sing 395 n n 
N10 H5 URJ sing 396 n n 
C12 H6 URJ sing 397 n n 
C12 H7 URJ sing 398 n n 
C15 H8 URJ sing 399 n n 
C16 H9 URJ sing 400 n n 
C21 H10 URJ sing 401 n n 
C21 H11 URJ sing 402 n n 
C13 H12 URJ sing 403 n n 
C13 H13 URJ sing 404 n n 
C20 H14 URJ sing 405 n n 
C20 H15 URJ sing 406 n n 
C22 H16 URJ sing 407 n n 
C22 H17 URJ sing 408 n n 
C25 H18 URJ sing 409 n n 
C26 H19 URJ sing 410 n n 
C29 H20 URJ sing 411 n n 
C29 H21 URJ sing 412 n n 
C29 H22 URJ sing 413 n n 
#
_atom_sites.entry_id                     6X5Y 
_atom_sites.fract_transf_matrix[1][1]    0.011773 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010851 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007685 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 URJ A 1 501 1 URJ INX . 
D 2 URJ B 1 501 2 URJ INX . 
E 3 HOH A 1 601 5 HOH HOH . 
E 3 HOH A 2 602 6 HOH HOH . 
E 3 HOH A 3 603 11 HOH HOH . 
E 3 HOH A 4 604 56 HOH HOH . 
E 3 HOH A 5 605 48 HOH HOH . 
E 3 HOH A 6 606 1 HOH HOH . 
E 3 HOH A 7 607 20 HOH HOH . 
F 3 HOH B 1 601 52 HOH HOH . 
F 3 HOH B 2 602 54 HOH HOH . 
F 3 HOH B 3 603 4 HOH HOH . 
F 3 HOH B 4 604 50 HOH HOH . 
F 3 HOH B 5 605 22 HOH HOH . 
F 3 HOH B 6 606 36 HOH HOH . 
F 3 HOH B 7 607 49 HOH HOH . 
F 3 HOH B 8 608 12 HOH HOH . 
F 3 HOH B 9 609 19 HOH HOH . 
F 3 HOH B 10 610 3 HOH HOH . 
F 3 HOH B 11 611 55 HOH HOH . 
F 3 HOH B 12 612 53 HOH HOH . 
F 3 HOH B 13 613 8 HOH HOH . 
F 3 HOH B 14 614 16 HOH HOH . 
F 3 HOH B 15 615 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 URJ . . . D 2 55.895 49.176 19.627 1 57.3 ? C2 URJ 501 B 1 
HETATM 2 C C3 URJ . . . D 2 56.87 49.647 20.512 1 57.41 ? C3 URJ 501 B 1 
HETATM 3 C C4 URJ . . . D 2 57.963 50.362 20.039 1 57.03 ? C4 URJ 501 B 1 
HETATM 4 C C5 URJ . . . D 2 58.101 50.622 18.654 1 57.36 ? C5 URJ 501 B 1 
HETATM 5 C C6 URJ . . . D 2 57.11 50.127 17.773 1 55.8 ? C6 URJ 501 B 1 
HETATM 6 C C7 URJ . . . D 2 56.018 49.423 18.26 1 55.44 ? C7 URJ 501 B 1 
HETATM 7 C C8 URJ . . . D 2 59.275 51.369 18.136 1 59.84 ? C8 URJ 501 B 1 
HETATM 8 O O9 URJ . . . D 2 60.341 51.189 18.705 1 64.89 ? O9 URJ 501 B 1 
HETATM 9 N N10 URJ . . . D 2 59.159 52.211 17.063 1 59.96 ? N10 URJ 501 B 1 
HETATM 10 C C11 URJ . . . D 2 60.282 52.958 16.476 1 60.97 ? C11 URJ 501 B 1 
HETATM 11 C C12 URJ . . . D 2 59.914 54.318 15.882 1 60.31 ? C12 URJ 501 B 1 
HETATM 12 C C15 URJ . . . D 2 62.445 51.688 16.483 1 64.43 ? C15 URJ 501 B 1 
HETATM 13 C C16 URJ . . . D 2 63.368 50.827 15.885 1 63.95 ? C16 URJ 501 B 1 
HETATM 14 C C17 URJ . . . D 2 63.124 50.359 14.578 1 63.91 ? C17 URJ 501 B 1 
HETATM 15 C C18 URJ . . . D 2 61.924 50.751 13.954 1 63.88 ? C18 URJ 501 B 1 
HETATM 16 C C21 URJ . . . D 2 62.334 48.958 12.149 1 62.92 ? C21 URJ 501 B 1 
HETATM 17 C C24 URJ . . . D 2 65.385 49.603 13.694 1 61.68 ? C24 URJ 501 B 1 
HETATM 18 F F1 URJ . . . D 2 54.835 48.484 20.083 1 60.82 ? F1 URJ 501 B 1 
HETATM 19 C C13 URJ . . . D 2 60.796 54.243 17.132 1 60.05 ? C13 URJ 501 B 1 
HETATM 20 C C14 URJ . . . D 2 61.286 52.054 15.793 1 64.3 ? C14 URJ 501 B 1 
HETATM 21 N N19 URJ . . . D 2 61.06 51.57 14.572 1 64.44 ? N19 URJ 501 B 1 
HETATM 22 C C20 URJ . . . D 2 61.597 50.253 12.562 1 64.46 ? C20 URJ 501 B 1 
HETATM 23 C C22 URJ . . . D 2 63.202 48.35 13.273 1 63.57 ? C22 URJ 501 B 1 
HETATM 24 N N23 URJ . . . D 2 63.982 49.469 13.874 1 64.13 ? N23 URJ 501 B 1 
HETATM 25 C C25 URJ . . . D 2 66.176 50.65 14.248 1 59.48 ? C25 URJ 501 B 1 
HETATM 26 C C26 URJ . . . D 2 67.545 50.671 13.999 1 62.03 ? C26 URJ 501 B 1 
HETATM 27 N N27 URJ . . . D 2 68.117 49.73 13.242 1 60.73 ? N27 URJ 501 B 1 
HETATM 28 C C28 URJ . . . D 2 67.381 48.759 12.724 1 60.74 ? C28 URJ 501 B 1 
HETATM 29 C C29 URJ . . . D 2 68.056 47.716 11.875 1 60.35 ? C29 URJ 501 B 1 
HETATM 30 N N30 URJ . . . D 2 66.065 48.701 12.939 1 62.02 ? N30 URJ 501 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#