data_6X72 # _model_server_result.job_id -AxIoKE0SjV7-zUOMMmSxw _model_server_result.datetime_utc '2024-11-07 15:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":804}' # _entry.id 6X72 # _exptl.entry_id 6X72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X72 _cell.length_a 62.408 _cell.length_b 73.814 _cell.length_c 117.147 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O ASP 244 A ASP 548 1_555 F MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc2 C O VAL 249 A VAL 553 1_555 F MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? hydrog 'DG-DC PAIR' hydrog1 A N2 DG 1 P DG 1 1_555 B N3 DC 17 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 2 P DG 2 1_555 B N3 DC 16 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 2 P DG 2 1_555 B O2 DC 16 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 2 P DG 2 1_555 B N4 DC 16 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DG 3 P DG 3 1_555 B N3 DC 15 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N2 DG 3 P DG 3 1_555 B O2 DC 15 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O6 DG 3 P DG 3 1_555 B N4 DC 15 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 4 P DG 4 1_555 B N3 DC 14 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 4 P DG 4 1_555 B O2 DC 14 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 4 P DG 4 1_555 B N4 DC 14 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 5 P DT 5 1_555 B N1 DA 13 T DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 5 P DT 5 1_555 B N6 DA 13 T DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 P DG 6 1_555 B N3 DC 12 T DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 P DG 6 1_555 B O2 DC 12 T DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 P DG 6 1_555 B N4 DC 12 T DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 7 P DT 7 1_555 B N1 DA 11 T DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 7 P DT 7 1_555 B N6 DA 11 T DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 8 P DG 8 1_555 B N3 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 8 P DG 8 1_555 B O2 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 8 P DG 8 1_555 B N4 DC 10 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DG 9 P DG 9 1_555 B N3 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 DG 9 P DG 9 1_555 B O2 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 DG 9 P DG 9 1_555 B N4 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DT 10 P DT 10 1_555 B N1 DA 8 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O4 DT 10 P DT 10 1_555 B N6 DA 8 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DA 11 P DA 11 1_555 B N3 DT 7 T DT 7 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 DA 11 P DA 11 1_555 B N3 DT 7 T DT 7 1_555 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N6 DA 11 P DA 11 1_555 B O4 DT 7 T DT 7 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N6 DA 11 P DA 11 1_555 B O4 DT 7 T DT 7 1_555 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 P DG 12 1_555 B N3 DC 6 T DC 6 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N1 DG 12 P DG 12 1_555 B N3 DC 6 T DC 6 1_555 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N2 DG 12 P DG 12 1_555 B O2 DC 6 T DC 6 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N2 DG 12 P DG 12 1_555 B O2 DC 6 T DC 6 1_555 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O6 DG 12 P DG 12 1_555 B N4 DC 6 T DC 6 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O6 DG 12 P DG 12 1_555 B N4 DC 6 T DC 6 1_555 ? B ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 278 n n C1 C2 GOL sing 279 n n C1 H11 GOL sing 280 n n C1 H12 GOL sing 281 n n O1 HO1 GOL sing 282 n n C2 O2 GOL sing 283 n n C2 C3 GOL sing 284 n n C2 H2 GOL sing 285 n n O2 HO2 GOL sing 286 n n C3 O3 GOL sing 287 n n C3 H31 GOL sing 288 n n C3 H32 GOL sing 289 n n O3 HO3 GOL sing 290 n n # _atom_sites.entry_id 6X72 _atom_sites.fract_transf_matrix[1][1] 0.016024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PO4 A 1 801 1 PO4 PO4 . E 4 PO4 A 1 802 2 PO4 PO4 . F 5 MG A 1 803 101 MG MG . G 6 GOL A 1 804 805 GOL GOL . H 7 HOH P 1 101 88 HOH HOH . H 7 HOH P 2 102 13 HOH HOH . H 7 HOH P 3 103 35 HOH HOH . H 7 HOH P 4 104 59 HOH HOH . H 7 HOH P 5 105 63 HOH HOH . H 7 HOH P 6 106 127 HOH HOH . H 7 HOH P 7 107 97 HOH HOH . I 7 HOH T 1 101 21 HOH HOH . I 7 HOH T 2 102 5 HOH HOH . I 7 HOH T 3 103 2 HOH HOH . I 7 HOH T 4 104 17 HOH HOH . I 7 HOH T 5 105 71 HOH HOH . I 7 HOH T 6 106 96 HOH HOH . I 7 HOH T 7 107 125 HOH HOH . I 7 HOH T 8 108 118 HOH HOH . I 7 HOH T 9 109 94 HOH HOH . I 7 HOH T 10 110 140 HOH HOH . J 7 HOH A 1 901 57 HOH HOH . J 7 HOH A 2 902 130 HOH HOH . J 7 HOH A 3 903 102 HOH HOH . J 7 HOH A 4 904 90 HOH HOH . J 7 HOH A 5 905 50 HOH HOH . J 7 HOH A 6 906 76 HOH HOH . J 7 HOH A 7 907 72 HOH HOH . J 7 HOH A 8 908 49 HOH HOH . J 7 HOH A 9 909 9 HOH HOH . J 7 HOH A 10 910 78 HOH HOH . J 7 HOH A 11 911 56 HOH HOH . J 7 HOH A 12 912 77 HOH HOH . J 7 HOH A 13 913 27 HOH HOH . J 7 HOH A 14 914 22 HOH HOH . J 7 HOH A 15 915 132 HOH HOH . J 7 HOH A 16 916 15 HOH HOH . J 7 HOH A 17 917 73 HOH HOH . J 7 HOH A 18 918 52 HOH HOH . J 7 HOH A 19 919 7 HOH HOH . J 7 HOH A 20 920 93 HOH HOH . J 7 HOH A 21 921 66 HOH HOH . J 7 HOH A 22 922 115 HOH HOH . J 7 HOH A 23 923 64 HOH HOH . J 7 HOH A 24 924 131 HOH HOH . J 7 HOH A 25 925 11 HOH HOH . J 7 HOH A 26 926 79 HOH HOH . J 7 HOH A 27 927 46 HOH HOH . J 7 HOH A 28 928 91 HOH HOH . J 7 HOH A 29 929 135 HOH HOH . J 7 HOH A 30 930 3 HOH HOH . J 7 HOH A 31 931 20 HOH HOH . J 7 HOH A 32 932 68 HOH HOH . J 7 HOH A 33 933 24 HOH HOH . J 7 HOH A 34 934 67 HOH HOH . J 7 HOH A 35 935 48 HOH HOH . J 7 HOH A 36 936 30 HOH HOH . J 7 HOH A 37 937 69 HOH HOH . J 7 HOH A 38 938 1 HOH HOH . J 7 HOH A 39 939 37 HOH HOH . J 7 HOH A 40 940 84 HOH HOH . J 7 HOH A 41 941 32 HOH HOH . J 7 HOH A 42 942 19 HOH HOH . J 7 HOH A 43 943 119 HOH HOH . J 7 HOH A 44 944 29 HOH HOH . J 7 HOH A 45 945 58 HOH HOH . J 7 HOH A 46 946 60 HOH HOH . J 7 HOH A 47 947 31 HOH HOH . J 7 HOH A 48 948 8 HOH HOH . J 7 HOH A 49 949 6 HOH HOH . J 7 HOH A 50 950 95 HOH HOH . J 7 HOH A 51 951 44 HOH HOH . J 7 HOH A 52 952 55 HOH HOH . J 7 HOH A 53 953 65 HOH HOH . J 7 HOH A 54 954 53 HOH HOH . J 7 HOH A 55 955 10 HOH HOH . J 7 HOH A 56 956 113 HOH HOH . J 7 HOH A 57 957 114 HOH HOH . J 7 HOH A 58 958 28 HOH HOH . J 7 HOH A 59 959 4 HOH HOH . J 7 HOH A 60 960 110 HOH HOH . J 7 HOH A 61 961 34 HOH HOH . J 7 HOH A 62 962 40 HOH HOH . J 7 HOH A 63 963 123 HOH HOH . J 7 HOH A 64 964 41 HOH HOH . J 7 HOH A 65 965 33 HOH HOH . J 7 HOH A 66 966 14 HOH HOH . J 7 HOH A 67 967 16 HOH HOH . J 7 HOH A 68 968 137 HOH HOH . J 7 HOH A 69 969 25 HOH HOH . J 7 HOH A 70 970 43 HOH HOH . J 7 HOH A 71 971 23 HOH HOH . J 7 HOH A 72 972 47 HOH HOH . J 7 HOH A 73 973 42 HOH HOH . J 7 HOH A 74 974 136 HOH HOH . J 7 HOH A 75 975 85 HOH HOH . J 7 HOH A 76 976 117 HOH HOH . J 7 HOH A 77 977 129 HOH HOH . J 7 HOH A 78 978 61 HOH HOH . J 7 HOH A 79 979 122 HOH HOH . J 7 HOH A 80 980 100 HOH HOH . J 7 HOH A 81 981 38 HOH HOH . J 7 HOH A 82 982 81 HOH HOH . J 7 HOH A 83 983 128 HOH HOH . J 7 HOH A 84 984 106 HOH HOH . J 7 HOH A 85 985 87 HOH HOH . J 7 HOH A 86 986 103 HOH HOH . J 7 HOH A 87 987 109 HOH HOH . J 7 HOH A 88 988 26 HOH HOH . J 7 HOH A 89 989 133 HOH HOH . J 7 HOH A 90 990 54 HOH HOH . J 7 HOH A 91 991 18 HOH HOH . J 7 HOH A 92 992 70 HOH HOH . J 7 HOH A 93 993 12 HOH HOH . J 7 HOH A 94 994 139 HOH HOH . J 7 HOH A 95 995 83 HOH HOH . J 7 HOH A 96 996 104 HOH HOH . J 7 HOH A 97 997 39 HOH HOH . J 7 HOH A 98 998 75 HOH HOH . J 7 HOH A 99 999 99 HOH HOH . J 7 HOH A 100 1000 36 HOH HOH . J 7 HOH A 101 1001 120 HOH HOH . J 7 HOH A 102 1002 74 HOH HOH . J 7 HOH A 103 1003 82 HOH HOH . J 7 HOH A 104 1004 134 HOH HOH . J 7 HOH A 105 1005 107 HOH HOH . J 7 HOH A 106 1006 89 HOH HOH . J 7 HOH A 107 1007 138 HOH HOH . J 7 HOH A 108 1008 116 HOH HOH . J 7 HOH A 109 1009 51 HOH HOH . J 7 HOH A 110 1010 111 HOH HOH . J 7 HOH A 111 1011 86 HOH HOH . J 7 HOH A 112 1012 62 HOH HOH . J 7 HOH A 113 1013 141 HOH HOH . J 7 HOH A 114 1014 80 HOH HOH . J 7 HOH A 115 1015 142 HOH HOH . J 7 HOH A 116 1016 98 HOH HOH . J 7 HOH A 117 1017 105 HOH HOH . J 7 HOH A 118 1018 101 HOH HOH . J 7 HOH A 119 1019 92 HOH HOH . J 7 HOH A 120 1020 126 HOH HOH . J 7 HOH A 121 1021 121 HOH HOH . J 7 HOH A 122 1022 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -5.629 11.852 5.922 1 47.84 ? C1 GOL 804 A 1 HETATM 2 O O1 GOL . . . G 6 -4.795 12.37 6.912 1 55.06 ? O1 GOL 804 A 1 HETATM 3 C C2 GOL . . . G 6 -6.964 12.657 6.009 1 55.24 ? C2 GOL 804 A 1 HETATM 4 O O2 GOL . . . G 6 -7.05 13.63 4.977 1 50.71 ? O2 GOL 804 A 1 HETATM 5 C C3 GOL . . . G 6 -8.072 11.525 5.923 1 44.63 ? C3 GOL 804 A 1 HETATM 6 O O3 GOL . . . G 6 -9.209 11.902 6.686 1 49.77 ? O3 GOL 804 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #