data_6X7B # _model_server_result.job_id b3VJR79TN45K-VQzv37kIQ _model_server_result.datetime_utc '2024-10-19 03:52:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6X7B # _exptl.entry_id 6X7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.558 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[7-oxo-5-(piperazin-1-yl)-7H-thieno[3,2-b]pyran-3-yl]-N-[(pyridin-3-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.01 _cell.angle_gamma 90 _cell.entry_id 6X7B _cell.length_a 56.241 _cell.length_b 39.452 _cell.length_c 62.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H24 N4 O5 S' _chem_comp.formula_weight 504.558 _chem_comp.id ZVP _chem_comp.mon_nstd_flag . _chem_comp.name 7-[7-oxo-5-(piperazin-1-yl)-7H-thieno[3,2-b]pyran-3-yl]-N-[(pyridin-3-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C04 ZVP sing 376 n n O01 C05 ZVP sing 377 n n C04 C03 ZVP sing 378 n n C29 S25 ZVP sing 379 n y C29 C28 ZVP doub 380 n y S25 C26 ZVP sing 381 n y C10 C05 ZVP doub 382 n y C10 C09 ZVP sing 383 n y C05 C06 ZVP sing 384 n y C28 C09 ZVP sing 385 n n C28 C27 ZVP sing 386 n y C03 O02 ZVP sing 387 n n C09 C08 ZVP doub 388 n y C26 C27 ZVP doub 389 n y C26 C22 ZVP sing 390 n n O36 C22 ZVP doub 391 n n C06 O02 ZVP sing 392 n n C06 C07 ZVP doub 393 n y C27 O21 ZVP sing 394 n n C22 C23 ZVP sing 395 n n C08 C07 ZVP sing 396 n y C07 C11 ZVP sing 397 n n O21 C24 ZVP sing 398 n n C23 C24 ZVP doub 399 n n C24 N35 ZVP sing 400 n n C11 N13 ZVP sing 401 n n C11 O12 ZVP doub 402 n n N13 C14 ZVP sing 403 n n N35 C30 ZVP sing 404 n n N35 C34 ZVP sing 405 n n C30 C31 ZVP sing 406 n n C16 N15 ZVP doub 407 n y C16 C17 ZVP sing 408 n y N15 C20 ZVP sing 409 n y C14 C17 ZVP sing 410 n n C17 C18 ZVP doub 411 n y C34 C33 ZVP sing 412 n n C20 C19 ZVP doub 413 n y C18 C19 ZVP sing 414 n y C31 N32 ZVP sing 415 n n C33 N32 ZVP sing 416 n n C03 H1 ZVP sing 417 n n C03 H2 ZVP sing 418 n n C04 H3 ZVP sing 419 n n C04 H4 ZVP sing 420 n n C08 H5 ZVP sing 421 n n C10 H6 ZVP sing 422 n n C14 H7 ZVP sing 423 n n C14 H8 ZVP sing 424 n n C16 H9 ZVP sing 425 n n C18 H10 ZVP sing 426 n n C19 H11 ZVP sing 427 n n C20 H12 ZVP sing 428 n n C23 H13 ZVP sing 429 n n C29 H14 ZVP sing 430 n n C30 H15 ZVP sing 431 n n C30 H16 ZVP sing 432 n n C31 H17 ZVP sing 433 n n C31 H18 ZVP sing 434 n n C33 H19 ZVP sing 435 n n C33 H20 ZVP sing 436 n n C34 H21 ZVP sing 437 n n C34 H22 ZVP sing 438 n n N13 H23 ZVP sing 439 n n N32 H24 ZVP sing 440 n n # _atom_sites.entry_id 6X7B _atom_sites.fract_transf_matrix[1][1] 0.017781 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005781 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZVP A 1 201 1 ZVP ZVP . D 2 ZVP B 1 201 2 ZVP ZVP . E 3 HOH A 1 301 166 HOH HOH . E 3 HOH A 2 302 84 HOH HOH . E 3 HOH A 3 303 158 HOH HOH . E 3 HOH A 4 304 181 HOH HOH . E 3 HOH A 5 305 130 HOH HOH . E 3 HOH A 6 306 142 HOH HOH . E 3 HOH A 7 307 34 HOH HOH . E 3 HOH A 8 308 36 HOH HOH . E 3 HOH A 9 309 146 HOH HOH . E 3 HOH A 10 310 131 HOH HOH . E 3 HOH A 11 311 61 HOH HOH . E 3 HOH A 12 312 73 HOH HOH . E 3 HOH A 13 313 141 HOH HOH . E 3 HOH A 14 314 17 HOH HOH . E 3 HOH A 15 315 175 HOH HOH . E 3 HOH A 16 316 85 HOH HOH . E 3 HOH A 17 317 80 HOH HOH . E 3 HOH A 18 318 156 HOH HOH . E 3 HOH A 19 319 20 HOH HOH . E 3 HOH A 20 320 19 HOH HOH . E 3 HOH A 21 321 65 HOH HOH . E 3 HOH A 22 322 189 HOH HOH . E 3 HOH A 23 323 165 HOH HOH . E 3 HOH A 24 324 38 HOH HOH . E 3 HOH A 25 325 67 HOH HOH . E 3 HOH A 26 326 33 HOH HOH . E 3 HOH A 27 327 116 HOH HOH . E 3 HOH A 28 328 101 HOH HOH . E 3 HOH A 29 329 122 HOH HOH . E 3 HOH A 30 330 138 HOH HOH . E 3 HOH A 31 331 9 HOH HOH . E 3 HOH A 32 332 5 HOH HOH . E 3 HOH A 33 333 55 HOH HOH . E 3 HOH A 34 334 134 HOH HOH . E 3 HOH A 35 335 100 HOH HOH . E 3 HOH A 36 336 30 HOH HOH . E 3 HOH A 37 337 4 HOH HOH . E 3 HOH A 38 338 160 HOH HOH . E 3 HOH A 39 339 69 HOH HOH . E 3 HOH A 40 340 117 HOH HOH . E 3 HOH A 41 341 8 HOH HOH . E 3 HOH A 42 342 155 HOH HOH . E 3 HOH A 43 343 47 HOH HOH . E 3 HOH A 44 344 59 HOH HOH . E 3 HOH A 45 345 10 HOH HOH . E 3 HOH A 46 346 79 HOH HOH . E 3 HOH A 47 347 60 HOH HOH . E 3 HOH A 48 348 136 HOH HOH . E 3 HOH A 49 349 171 HOH HOH . E 3 HOH A 50 350 167 HOH HOH . E 3 HOH A 51 351 45 HOH HOH . E 3 HOH A 52 352 180 HOH HOH . E 3 HOH A 53 353 57 HOH HOH . E 3 HOH A 54 354 12 HOH HOH . E 3 HOH A 55 355 118 HOH HOH . E 3 HOH A 56 356 32 HOH HOH . E 3 HOH A 57 357 194 HOH HOH . E 3 HOH A 58 358 72 HOH HOH . E 3 HOH A 59 359 153 HOH HOH . E 3 HOH A 60 360 94 HOH HOH . E 3 HOH A 61 361 22 HOH HOH . E 3 HOH A 62 362 71 HOH HOH . E 3 HOH A 63 363 190 HOH HOH . E 3 HOH A 64 364 74 HOH HOH . E 3 HOH A 65 365 103 HOH HOH . E 3 HOH A 66 366 159 HOH HOH . E 3 HOH A 67 367 193 HOH HOH . E 3 HOH A 68 368 27 HOH HOH . E 3 HOH A 69 369 89 HOH HOH . E 3 HOH A 70 370 139 HOH HOH . E 3 HOH A 71 371 162 HOH HOH . E 3 HOH A 72 372 125 HOH HOH . E 3 HOH A 73 373 50 HOH HOH . E 3 HOH A 74 374 18 HOH HOH . E 3 HOH A 75 375 185 HOH HOH . E 3 HOH A 76 376 56 HOH HOH . E 3 HOH A 77 377 102 HOH HOH . E 3 HOH A 78 378 168 HOH HOH . E 3 HOH A 79 379 111 HOH HOH . E 3 HOH A 80 380 104 HOH HOH . E 3 HOH A 81 381 196 HOH HOH . E 3 HOH A 82 382 133 HOH HOH . E 3 HOH A 83 383 63 HOH HOH . E 3 HOH A 84 384 191 HOH HOH . E 3 HOH A 85 385 87 HOH HOH . E 3 HOH A 86 386 41 HOH HOH . E 3 HOH A 87 387 11 HOH HOH . E 3 HOH A 88 388 124 HOH HOH . E 3 HOH A 89 389 199 HOH HOH . E 3 HOH A 90 390 24 HOH HOH . E 3 HOH A 91 391 112 HOH HOH . E 3 HOH A 92 392 179 HOH HOH . E 3 HOH A 93 393 113 HOH HOH . E 3 HOH A 94 394 157 HOH HOH . E 3 HOH A 95 395 98 HOH HOH . E 3 HOH A 96 396 174 HOH HOH . E 3 HOH A 97 397 40 HOH HOH . E 3 HOH A 98 398 119 HOH HOH . E 3 HOH A 99 399 96 HOH HOH . E 3 HOH A 100 400 6 HOH HOH . E 3 HOH A 101 401 137 HOH HOH . E 3 HOH A 102 402 83 HOH HOH . E 3 HOH A 103 403 14 HOH HOH . E 3 HOH A 104 404 31 HOH HOH . E 3 HOH A 105 405 176 HOH HOH . E 3 HOH A 106 406 49 HOH HOH . E 3 HOH A 107 407 170 HOH HOH . E 3 HOH A 108 408 195 HOH HOH . E 3 HOH A 109 409 197 HOH HOH . F 3 HOH B 1 301 13 HOH HOH . F 3 HOH B 2 302 149 HOH HOH . F 3 HOH B 3 303 154 HOH HOH . F 3 HOH B 4 304 115 HOH HOH . F 3 HOH B 5 305 184 HOH HOH . F 3 HOH B 6 306 172 HOH HOH . F 3 HOH B 7 307 92 HOH HOH . F 3 HOH B 8 308 21 HOH HOH . F 3 HOH B 9 309 135 HOH HOH . F 3 HOH B 10 310 23 HOH HOH . F 3 HOH B 11 311 15 HOH HOH . F 3 HOH B 12 312 200 HOH HOH . F 3 HOH B 13 313 163 HOH HOH . F 3 HOH B 14 314 93 HOH HOH . F 3 HOH B 15 315 127 HOH HOH . F 3 HOH B 16 316 1 HOH HOH . F 3 HOH B 17 317 2 HOH HOH . F 3 HOH B 18 318 16 HOH HOH . F 3 HOH B 19 319 126 HOH HOH . F 3 HOH B 20 320 68 HOH HOH . F 3 HOH B 21 321 39 HOH HOH . F 3 HOH B 22 322 77 HOH HOH . F 3 HOH B 23 323 148 HOH HOH . F 3 HOH B 24 324 82 HOH HOH . F 3 HOH B 25 325 91 HOH HOH . F 3 HOH B 26 326 64 HOH HOH . F 3 HOH B 27 327 114 HOH HOH . F 3 HOH B 28 328 42 HOH HOH . F 3 HOH B 29 329 25 HOH HOH . F 3 HOH B 30 330 52 HOH HOH . F 3 HOH B 31 331 66 HOH HOH . F 3 HOH B 32 332 192 HOH HOH . F 3 HOH B 33 333 7 HOH HOH . F 3 HOH B 34 334 44 HOH HOH . F 3 HOH B 35 335 26 HOH HOH . F 3 HOH B 36 336 145 HOH HOH . F 3 HOH B 37 337 70 HOH HOH . F 3 HOH B 38 338 129 HOH HOH . F 3 HOH B 39 339 48 HOH HOH . F 3 HOH B 40 340 161 HOH HOH . F 3 HOH B 41 341 187 HOH HOH . F 3 HOH B 42 342 3 HOH HOH . F 3 HOH B 43 343 76 HOH HOH . F 3 HOH B 44 344 86 HOH HOH . F 3 HOH B 45 345 183 HOH HOH . F 3 HOH B 46 346 99 HOH HOH . F 3 HOH B 47 347 75 HOH HOH . F 3 HOH B 48 348 29 HOH HOH . F 3 HOH B 49 349 43 HOH HOH . F 3 HOH B 50 350 51 HOH HOH . F 3 HOH B 51 351 95 HOH HOH . F 3 HOH B 52 352 37 HOH HOH . F 3 HOH B 53 353 152 HOH HOH . F 3 HOH B 54 354 81 HOH HOH . F 3 HOH B 55 355 178 HOH HOH . F 3 HOH B 56 356 105 HOH HOH . F 3 HOH B 57 357 46 HOH HOH . F 3 HOH B 58 358 53 HOH HOH . F 3 HOH B 59 359 58 HOH HOH . F 3 HOH B 60 360 28 HOH HOH . F 3 HOH B 61 361 173 HOH HOH . F 3 HOH B 62 362 88 HOH HOH . F 3 HOH B 63 363 110 HOH HOH . F 3 HOH B 64 364 169 HOH HOH . F 3 HOH B 65 365 201 HOH HOH . F 3 HOH B 66 366 140 HOH HOH . F 3 HOH B 67 367 120 HOH HOH . F 3 HOH B 68 368 54 HOH HOH . F 3 HOH B 69 369 128 HOH HOH . F 3 HOH B 70 370 97 HOH HOH . F 3 HOH B 71 371 123 HOH HOH . F 3 HOH B 72 372 109 HOH HOH . F 3 HOH B 73 373 144 HOH HOH . F 3 HOH B 74 374 151 HOH HOH . F 3 HOH B 75 375 90 HOH HOH . F 3 HOH B 76 376 164 HOH HOH . F 3 HOH B 77 377 121 HOH HOH . F 3 HOH B 78 378 182 HOH HOH . F 3 HOH B 79 379 147 HOH HOH . F 3 HOH B 80 380 198 HOH HOH . F 3 HOH B 81 381 188 HOH HOH . F 3 HOH B 82 382 177 HOH HOH . F 3 HOH B 83 383 132 HOH HOH . F 3 HOH B 84 384 150 HOH HOH . F 3 HOH B 85 385 143 HOH HOH . F 3 HOH B 86 386 78 HOH HOH . F 3 HOH B 87 387 108 HOH HOH . F 3 HOH B 88 388 107 HOH HOH . F 3 HOH B 89 389 186 HOH HOH . F 3 HOH B 90 390 35 HOH HOH . F 3 HOH B 91 391 106 HOH HOH . F 3 HOH B 92 392 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C03 ZVP . . . D 2 42.653 14.683 -22.932 1 26.05 ? C03 ZVP 201 B 1 HETATM 2 C C04 ZVP . . . D 2 41.589 14.814 -21.845 1 24.11 ? C04 ZVP 201 B 1 HETATM 3 C C05 ZVP . . . D 2 40.927 16.868 -22.883 1 21.41 ? C05 ZVP 201 B 1 HETATM 4 C C06 ZVP . . . D 2 41.43 16.329 -24.167 1 23.4 ? C06 ZVP 201 B 1 HETATM 5 C C07 ZVP . . . D 2 41.14 17.086 -25.404 1 22.67 ? C07 ZVP 201 B 1 HETATM 6 C C08 ZVP . . . D 2 40.412 18.26 -25.295 1 21.4 ? C08 ZVP 201 B 1 HETATM 7 C C09 ZVP . . . D 2 39.961 18.736 -24.065 1 19.69 ? C09 ZVP 201 B 1 HETATM 8 C C10 ZVP . . . D 2 40.21 18.057 -22.875 1 21.09 ? C10 ZVP 201 B 1 HETATM 9 C C11 ZVP . . . D 2 41.603 16.623 -26.753 1 26.51 ? C11 ZVP 201 B 1 HETATM 10 C C14 ZVP . . . D 2 42.793 15.089 -28.168 1 27.32 ? C14 ZVP 201 B 1 HETATM 11 C C16 ZVP . . . D 2 44.866 16.491 -27.923 1 30.16 ? C16 ZVP 201 B 1 HETATM 12 C C17 ZVP . . . D 2 43.86 15.992 -28.742 1 28.91 ? C17 ZVP 201 B 1 HETATM 13 C C18 ZVP . . . D 2 43.846 16.324 -30.09 1 29.03 ? C18 ZVP 201 B 1 HETATM 14 C C19 ZVP . . . D 2 44.842 17.157 -30.583 1 29.78 ? C19 ZVP 201 B 1 HETATM 15 C C20 ZVP . . . D 2 45.825 17.629 -29.719 1 30.33 ? C20 ZVP 201 B 1 HETATM 16 C C22 ZVP . . . D 2 38.794 23.477 -25.607 1 18.1 ? C22 ZVP 201 B 1 HETATM 17 C C23 ZVP . . . D 2 39.825 23.435 -26.549 1 18.9 ? C23 ZVP 201 B 1 HETATM 18 C C24 ZVP . . . D 2 40.64 22.299 -26.682 1 18.7 ? C24 ZVP 201 B 1 HETATM 19 C C26 ZVP . . . D 2 38.621 22.267 -24.771 1 17.54 ? C26 ZVP 201 B 1 HETATM 20 C C27 ZVP . . . D 2 39.524 21.14 -24.987 1 18.74 ? C27 ZVP 201 B 1 HETATM 21 C C28 ZVP . . . D 2 39.195 20.011 -24.059 1 19.17 ? C28 ZVP 201 B 1 HETATM 22 C C29 ZVP . . . D 2 38.111 20.323 -23.213 1 17.94 ? C29 ZVP 201 B 1 HETATM 23 C C30 ZVP . . . D 2 42.591 21.11 -27.554 1 22.47 ? C30 ZVP 201 B 1 HETATM 24 C C31 ZVP . . . D 2 42.593 20.496 -28.945 1 24.81 ? C31 ZVP 201 B 1 HETATM 25 C C33 ZVP . . . D 2 42.009 22.577 -29.964 1 23.8 ? C33 ZVP 201 B 1 HETATM 26 C C34 ZVP . . . D 2 41.852 23.285 -28.622 1 22.04 ? C34 ZVP 201 B 1 HETATM 27 N N13 ZVP . . . D 2 42.421 15.579 -26.857 1 27.39 ? N13 ZVP 201 B 1 HETATM 28 N N15 ZVP . . . D 2 45.816 17.29 -28.423 1 29.95 ? N15 ZVP 201 B 1 HETATM 29 N N32 ZVP . . . D 2 43.033 21.522 -29.901 1 25.78 ? N32 ZVP 201 B 1 HETATM 30 N N35 ZVP . . . D 2 41.677 22.243 -27.62 1 22.46 ? N35 ZVP 201 B 1 HETATM 31 O O01 ZVP . . . D 2 41.185 16.178 -21.73 1 23.35 ? O01 ZVP 201 B 1 HETATM 32 O O02 ZVP . . . D 2 42.136 15.158 -24.175 1 26.19 ? O02 ZVP 201 B 1 HETATM 33 O O12 ZVP . . . D 2 41.216 17.226 -27.741 1 27.81 ? O12 ZVP 201 B 1 HETATM 34 O O21 ZVP . . . D 2 40.477 21.179 -25.903 1 17.94 ? O21 ZVP 201 B 1 HETATM 35 O O36 ZVP . . . D 2 38.056 24.479 -25.469 1 17.03 ? O36 ZVP 201 B 1 HETATM 36 S S25 ZVP . . . D 2 37.52 21.934 -23.557 1 16.47 ? S25 ZVP 201 B 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 36 #