data_6X7U # _model_server_result.job_id Zh03vYKhutysKF0h9Op9TA _model_server_result.datetime_utc '2024-12-25 20:11:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6X7U # _exptl.entry_id 6X7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X7U _cell.length_a 64.721 _cell.length_b 64.721 _cell.length_c 77.751 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 59 A GLY 59 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A OE2 GLU 80 A GLU 80 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 A NE2 HIS 99 A HIS 99 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 A OE1 GLU 173 A GLU 173 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc5 A OE2 GLU 173 A GLU 173 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc6 C O1A FAD . A FAD 201 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 F MN MN . A MN 204 3_565 B NE2 HIS 99 C HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc8 F MN MN . A MN 204 3_565 B OE2 GLU 173 C GLU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc9 B O GLY 59 C GLY 59 1_555 H MN MN . C MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc10 B OE2 GLU 80 C GLU 80 1_555 H MN MN . C MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc11 G O2P AMP . C AMP 201 1_555 H MN MN . C MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 122 n n PA O2A FAD sing 123 n n PA O5B FAD sing 124 n n PA O3P FAD sing 125 n n O2A HOA2 FAD sing 126 n n O5B C5B FAD sing 127 n n C5B C4B FAD sing 128 n n C5B H51A FAD sing 129 n n C5B H52A FAD sing 130 n n C4B O4B FAD sing 131 n n C4B C3B FAD sing 132 n n C4B H4B FAD sing 133 n n O4B C1B FAD sing 134 n n C3B O3B FAD sing 135 n n C3B C2B FAD sing 136 n n C3B H3B FAD sing 137 n n O3B HO3A FAD sing 138 n n C2B O2B FAD sing 139 n n C2B C1B FAD sing 140 n n C2B H2B FAD sing 141 n n O2B HO2A FAD sing 142 n n C1B N9A FAD sing 143 n n C1B H1B FAD sing 144 n n N9A C8A FAD sing 145 n y N9A C4A FAD sing 146 n y C8A N7A FAD doub 147 n y C8A H8A FAD sing 148 n n N7A C5A FAD sing 149 n y C5A C6A FAD sing 150 n y C5A C4A FAD doub 151 n y C6A N6A FAD sing 152 n n C6A N1A FAD doub 153 n y N6A H61A FAD sing 154 n n N6A H62A FAD sing 155 n n N1A C2A FAD sing 156 n y C2A N3A FAD doub 157 n y C2A H2A FAD sing 158 n n N3A C4A FAD sing 159 n y N1 C2 FAD sing 160 n n N1 C10 FAD doub 161 n n C2 O2 FAD doub 162 n n C2 N3 FAD sing 163 n n N3 C4 FAD sing 164 n n N3 HN3 FAD sing 165 n n C4 O4 FAD doub 166 n n C4 C4X FAD sing 167 n n C4X N5 FAD doub 168 n n C4X C10 FAD sing 169 n n N5 C5X FAD sing 170 n n C5X C6 FAD doub 171 n y C5X C9A FAD sing 172 n y C6 C7 FAD sing 173 n y C6 H6 FAD sing 174 n n C7 C7M FAD sing 175 n n C7 C8 FAD doub 176 n y C7M HM71 FAD sing 177 n n C7M HM72 FAD sing 178 n n C7M HM73 FAD sing 179 n n C8 C8M FAD sing 180 n n C8 C9 FAD sing 181 n y C8M HM81 FAD sing 182 n n C8M HM82 FAD sing 183 n n C8M HM83 FAD sing 184 n n C9 C9A FAD doub 185 n y C9 H9 FAD sing 186 n n C9A N10 FAD sing 187 n n N10 C10 FAD sing 188 n n N10 C1' FAD sing 189 n n C1' C2' FAD sing 190 n n C1' "H1'1" FAD sing 191 n n C1' "H1'2" FAD sing 192 n n C2' O2' FAD sing 193 n n C2' C3' FAD sing 194 n n C2' H2' FAD sing 195 n n O2' HO2' FAD sing 196 n n C3' O3' FAD sing 197 n n C3' C4' FAD sing 198 n n C3' H3' FAD sing 199 n n O3' HO3' FAD sing 200 n n C4' O4' FAD sing 201 n n C4' C5' FAD sing 202 n n C4' H4' FAD sing 203 n n O4' HO4' FAD sing 204 n n C5' O5' FAD sing 205 n n C5' "H5'1" FAD sing 206 n n C5' "H5'2" FAD sing 207 n n O5' P FAD sing 208 n n P O1P FAD doub 209 n n P O2P FAD sing 210 n n P O3P FAD sing 211 n n O2P HOP2 FAD sing 212 n n # _atom_sites.entry_id 6X7U _atom_sites.fract_transf_matrix[1][1] 0.015451 _atom_sites.fract_transf_matrix[1][2] 0.008921 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 201 201 FAD FAD . D 3 MN A 1 202 1 MN MN . E 3 MN A 1 203 3 MN MN . F 3 MN A 1 204 4 MN MN . G 4 AMP C 1 201 201 AMP FAD . H 3 MN C 1 202 2 MN MN . I 5 HOH A 1 301 6 HOH HOH . I 5 HOH A 2 302 12 HOH HOH . I 5 HOH A 3 303 17 HOH HOH . I 5 HOH A 4 304 9 HOH HOH . I 5 HOH A 5 305 13 HOH HOH . I 5 HOH A 6 306 36 HOH HOH . I 5 HOH A 7 307 39 HOH HOH . I 5 HOH A 8 308 42 HOH HOH . I 5 HOH A 9 309 21 HOH HOH . I 5 HOH A 10 310 22 HOH HOH . I 5 HOH A 11 311 18 HOH HOH . I 5 HOH A 12 312 7 HOH HOH . I 5 HOH A 13 313 29 HOH HOH . I 5 HOH A 14 314 10 HOH HOH . I 5 HOH A 15 315 33 HOH HOH . I 5 HOH A 16 316 38 HOH HOH . J 5 HOH C 1 301 8 HOH HOH . J 5 HOH C 2 302 43 HOH HOH . J 5 HOH C 3 303 25 HOH HOH . J 5 HOH C 4 304 3 HOH HOH . J 5 HOH C 5 305 35 HOH HOH . J 5 HOH C 6 306 4 HOH HOH . J 5 HOH C 7 307 11 HOH HOH . J 5 HOH C 8 308 5 HOH HOH . J 5 HOH C 9 309 30 HOH HOH . J 5 HOH C 10 310 14 HOH HOH . J 5 HOH C 11 311 2 HOH HOH . J 5 HOH C 12 312 19 HOH HOH . J 5 HOH C 13 313 20 HOH HOH . J 5 HOH C 14 314 16 HOH HOH . J 5 HOH C 15 315 32 HOH HOH . J 5 HOH C 16 316 24 HOH HOH . J 5 HOH C 17 317 15 HOH HOH . J 5 HOH C 18 318 34 HOH HOH . J 5 HOH C 19 319 28 HOH HOH . J 5 HOH C 20 320 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 22.905 26.584 1.064 1 70.65 ? PA FAD 201 A 1 HETATM 2 O O1A FAD . . . C 2 22.647 25.362 0.241 1 76.67 ? O1A FAD 201 A 1 HETATM 3 O O2A FAD . . . C 2 23.929 26.437 2.147 1 67.41 ? O2A FAD 201 A 1 HETATM 4 O O5B FAD . . . C 2 23.3 27.801 0.101 1 63.77 ? O5B FAD 201 A 1 HETATM 5 C C5B FAD . . . C 2 24.16 28.878 0.549 1 59.41 ? C5B FAD 201 A 1 HETATM 6 C C4B FAD . . . C 2 23.742 30.169 -0.116 1 57.01 ? C4B FAD 201 A 1 HETATM 7 O O4B FAD . . . C 2 22.976 29.872 -1.311 1 59.02 ? O4B FAD 201 A 1 HETATM 8 C C3B FAD . . . C 2 22.856 31.113 0.707 1 54.09 ? C3B FAD 201 A 1 HETATM 9 O O3B FAD . . . C 2 23.137 32.472 0.406 1 57.27 ? O3B FAD 201 A 1 HETATM 10 C C2B FAD . . . C 2 21.439 30.805 0.227 1 54.69 ? C2B FAD 201 A 1 HETATM 11 O O2B FAD . . . C 2 20.62 31.954 0.293 1 65.84 ? O2B FAD 201 A 1 HETATM 12 C C1B FAD . . . C 2 21.663 30.397 -1.222 1 55.25 ? C1B FAD 201 A 1 HETATM 13 N N9A FAD . . . C 2 20.731 29.38 -1.734 1 48.3 ? N9A FAD 201 A 1 HETATM 14 C C8A FAD . . . C 2 20.225 28.246 -1.096 1 46.86 ? C8A FAD 201 A 1 HETATM 15 N N7A FAD . . . C 2 19.451 27.53 -1.883 1 45.11 ? N7A FAD 201 A 1 HETATM 16 C C5A FAD . . . C 2 19.459 28.215 -3.1 1 45.01 ? C5A FAD 201 A 1 HETATM 17 C C6A FAD . . . C 2 18.851 27.961 -4.346 1 43.42 ? C6A FAD 201 A 1 HETATM 18 N N6A FAD . . . C 2 18.094 26.897 -4.584 1 50.28 ? N6A FAD 201 A 1 HETATM 19 N N1A FAD . . . C 2 19.093 28.828 -5.365 1 43.37 ? N1A FAD 201 A 1 HETATM 20 C C2A FAD . . . C 2 19.887 29.888 -5.128 1 45.38 ? C2A FAD 201 A 1 HETATM 21 N N3A FAD . . . C 2 20.514 30.23 -3.997 1 46.21 ? N3A FAD 201 A 1 HETATM 22 C C4A FAD . . . C 2 20.254 29.343 -3.016 1 45.09 ? C4A FAD 201 A 1 HETATM 23 N N1 FAD . . . C 2 21.247 29.284 8.299 1 82.08 ? N1 FAD 201 A 1 HETATM 24 C C2 FAD . . . C 2 20.14 30.058 8.462 1 86.45 ? C2 FAD 201 A 1 HETATM 25 O O2 FAD . . . C 2 19.594 30.6 7.495 1 89.15 ? O2 FAD 201 A 1 HETATM 26 N N3 FAD . . . C 2 19.589 30.279 9.682 1 85 ? N3 FAD 201 A 1 HETATM 27 C C4 FAD . . . C 2 20.117 29.725 10.824 1 88.09 ? C4 FAD 201 A 1 HETATM 28 O O4 FAD . . . C 2 19.58 29.953 11.9 1 86.7 ? O4 FAD 201 A 1 HETATM 29 C C4X FAD . . . C 2 21.277 28.898 10.694 1 84.78 ? C4X FAD 201 A 1 HETATM 30 N N5 FAD . . . C 2 21.798 28.354 11.77 1 81.99 ? N5 FAD 201 A 1 HETATM 31 C C5X FAD . . . C 2 22.902 27.55 11.607 1 90.64 ? C5X FAD 201 A 1 HETATM 32 C C6 FAD . . . C 2 23.473 26.941 12.74 1 86.57 ? C6 FAD 201 A 1 HETATM 33 C C7 FAD . . . C 2 24.585 26.132 12.65 1 90.33 ? C7 FAD 201 A 1 HETATM 34 C C7M FAD . . . C 2 25.159 25.512 13.902 1 90.5 ? C7M FAD 201 A 1 HETATM 35 C C8 FAD . . . C 2 25.171 25.887 11.367 1 89.44 ? C8 FAD 201 A 1 HETATM 36 C C8M FAD . . . C 2 26.375 24.992 11.205 1 86.64 ? C8M FAD 201 A 1 HETATM 37 C C9 FAD . . . C 2 24.621 26.476 10.255 1 85.6 ? C9 FAD 201 A 1 HETATM 38 C C9A FAD . . . C 2 23.488 27.306 10.348 1 90.59 ? C9A FAD 201 A 1 HETATM 39 N N10 FAD . . . C 2 22.912 27.901 9.233 1 92.37 ? N10 FAD 201 A 1 HETATM 40 C C10 FAD . . . C 2 21.792 28.722 9.359 1 87.59 ? C10 FAD 201 A 1 HETATM 41 C C1' FAD . . . C 2 23.565 27.688 7.929 1 101.86 ? C1' FAD 201 A 1 HETATM 42 C C2' FAD . . . C 2 22.763 26.873 6.949 1 107.45 ? C2' FAD 201 A 1 HETATM 43 O O2' FAD . . . C 2 23.145 25.495 6.968 1 105.58 ? O2' FAD 201 A 1 HETATM 44 C C3' FAD . . . C 2 23.018 27.472 5.565 1 107.98 ? C3' FAD 201 A 1 HETATM 45 O O3' FAD . . . C 2 24.297 27.032 5.12 1 109.32 ? O3' FAD 201 A 1 HETATM 46 C C4' FAD . . . C 2 22.946 29.007 5.542 1 112.68 ? C4' FAD 201 A 1 HETATM 47 O O4' FAD . . . C 2 21.726 29.442 6.141 1 117.17 ? O4' FAD 201 A 1 HETATM 48 C C5' FAD . . . C 2 23.003 29.614 4.161 1 115.06 ? C5' FAD 201 A 1 HETATM 49 O O5' FAD . . . C 2 22.737 28.585 3.184 1 122.62 ? O5' FAD 201 A 1 HETATM 50 P P FAD . . . C 2 21.229 28.269 2.745 1 115.74 ? P FAD 201 A 1 HETATM 51 O O1P FAD . . . C 2 20.443 27.633 3.842 1 113.96 ? O1P FAD 201 A 1 HETATM 52 O O2P FAD . . . C 2 20.67 29.531 2.182 1 115.93 ? O2P FAD 201 A 1 HETATM 53 O O3P FAD . . . C 2 21.513 27.154 1.624 1 79.4 ? O3P FAD 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #