data_6X7U # _model_server_result.job_id qvj99xtxzaDdo5IHhEY2HQ _model_server_result.datetime_utc '2024-12-25 20:10:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6X7U # _exptl.entry_id 6X7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X7U _cell.length_a 64.721 _cell.length_b 64.721 _cell.length_c 77.751 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 59 A GLY 59 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A OE2 GLU 80 A GLU 80 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 A NE2 HIS 99 A HIS 99 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 A OE1 GLU 173 A GLU 173 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc5 A OE2 GLU 173 A GLU 173 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc6 C O1A FAD . A FAD 201 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 F MN MN . A MN 204 3_565 B NE2 HIS 99 C HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc8 F MN MN . A MN 204 3_565 B OE2 GLU 173 C GLU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc9 B O GLY 59 C GLY 59 1_555 H MN MN . C MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc10 B OE2 GLU 80 C GLU 80 1_555 H MN MN . C MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc11 G O2P AMP . C AMP 201 1_555 H MN MN . C MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6X7U _atom_sites.fract_transf_matrix[1][1] 0.015451 _atom_sites.fract_transf_matrix[1][2] 0.008921 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 201 201 FAD FAD . D 3 MN A 1 202 1 MN MN . E 3 MN A 1 203 3 MN MN . F 3 MN A 1 204 4 MN MN . G 4 AMP C 1 201 201 AMP FAD . H 3 MN C 1 202 2 MN MN . I 5 HOH A 1 301 6 HOH HOH . I 5 HOH A 2 302 12 HOH HOH . I 5 HOH A 3 303 17 HOH HOH . I 5 HOH A 4 304 9 HOH HOH . I 5 HOH A 5 305 13 HOH HOH . I 5 HOH A 6 306 36 HOH HOH . I 5 HOH A 7 307 39 HOH HOH . I 5 HOH A 8 308 42 HOH HOH . I 5 HOH A 9 309 21 HOH HOH . I 5 HOH A 10 310 22 HOH HOH . I 5 HOH A 11 311 18 HOH HOH . I 5 HOH A 12 312 7 HOH HOH . I 5 HOH A 13 313 29 HOH HOH . I 5 HOH A 14 314 10 HOH HOH . I 5 HOH A 15 315 33 HOH HOH . I 5 HOH A 16 316 38 HOH HOH . J 5 HOH C 1 301 8 HOH HOH . J 5 HOH C 2 302 43 HOH HOH . J 5 HOH C 3 303 25 HOH HOH . J 5 HOH C 4 304 3 HOH HOH . J 5 HOH C 5 305 35 HOH HOH . J 5 HOH C 6 306 4 HOH HOH . J 5 HOH C 7 307 11 HOH HOH . J 5 HOH C 8 308 5 HOH HOH . J 5 HOH C 9 309 30 HOH HOH . J 5 HOH C 10 310 14 HOH HOH . J 5 HOH C 11 311 2 HOH HOH . J 5 HOH C 12 312 19 HOH HOH . J 5 HOH C 13 313 20 HOH HOH . J 5 HOH C 14 314 16 HOH HOH . J 5 HOH C 15 315 32 HOH HOH . J 5 HOH C 16 316 24 HOH HOH . J 5 HOH C 17 317 15 HOH HOH . J 5 HOH C 18 318 34 HOH HOH . J 5 HOH C 19 319 28 HOH HOH . J 5 HOH C 20 320 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . G 4 -7.216 13.212 -2.828 1 54.46 ? P AMP 201 C 1 HETATM 2 O O1P AMP . . . G 4 -7.972 12.32 -3.768 1 57.41 ? O1P AMP 201 C 1 HETATM 3 O O2P AMP . . . G 4 -6.445 12.57 -1.719 1 53.75 ? O2P AMP 201 C 1 HETATM 4 O O3P AMP . . . G 4 -6.267 14.157 -3.722 1 46.43 ? O3P AMP 201 C 1 HETATM 5 O O5' AMP . . . G 4 -8.203 14.295 -2.195 1 46.33 ? O5' AMP 201 C 1 HETATM 6 C C5' AMP . . . G 4 -9.478 13.808 -1.751 1 47.68 ? C5' AMP 201 C 1 HETATM 7 C C4' AMP . . . G 4 -10.311 14.996 -1.364 1 47.84 ? C4' AMP 201 C 1 HETATM 8 O O4' AMP . . . G 4 -9.778 15.534 -0.13 1 46.76 ? O4' AMP 201 C 1 HETATM 9 C C3' AMP . . . G 4 -10.321 16.155 -2.364 1 49.45 ? C3' AMP 201 C 1 HETATM 10 O O3' AMP . . . G 4 -11.658 16.64 -2.47 1 54.33 ? O3' AMP 201 C 1 HETATM 11 C C2' AMP . . . G 4 -9.342 17.187 -1.782 1 51.65 ? C2' AMP 201 C 1 HETATM 12 O O2' AMP . . . G 4 -9.847 18.511 -1.874 1 58.65 ? O2' AMP 201 C 1 HETATM 13 C C1' AMP . . . G 4 -9.201 16.807 -0.306 1 45.33 ? C1' AMP 201 C 1 HETATM 14 N N9 AMP . . . G 4 -7.841 16.718 0.239 1 43.3 ? N9 AMP 201 C 1 HETATM 15 C C8 AMP . . . G 4 -6.673 16.319 -0.39 1 46.62 ? C8 AMP 201 C 1 HETATM 16 N N7 AMP . . . G 4 -5.639 16.301 0.424 1 43.18 ? N7 AMP 201 C 1 HETATM 17 C C5 AMP . . . G 4 -6.149 16.686 1.661 1 46.28 ? C5 AMP 201 C 1 HETATM 18 C C6 AMP . . . G 4 -5.563 16.853 2.938 1 46.76 ? C6 AMP 201 C 1 HETATM 19 N N6 AMP . . . G 4 -4.281 16.631 3.218 1 48.46 ? N6 AMP 201 C 1 HETATM 20 N N1 AMP . . . G 4 -6.378 17.212 3.958 1 44.1 ? N1 AMP 201 C 1 HETATM 21 C C2 AMP . . . G 4 -7.676 17.42 3.695 1 49.11 ? C2 AMP 201 C 1 HETATM 22 N N3 AMP . . . G 4 -8.331 17.321 2.538 1 47.34 ? N3 AMP 201 C 1 HETATM 23 C C4 AMP . . . G 4 -7.504 16.937 1.55 1 44.93 ? C4 AMP 201 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #