data_6X86
#
_model_server_result.job_id            JBoKKxJ4RlxmHjSri03CCw 
_model_server_result.datetime_utc      '2025-07-02 12:02:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x86 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    6X86 
#
_exptl.entry_id    6X86 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              511.575 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[(6-{2-[(3R)-4-(hydroxyacetyl)-3-methylpiperazin-1-yl]pyrimidin-5-yl}-2,2-dimethyl-3-oxo-2,3-dihydro-1H-indol-1-yl)methyl]pyridine-2-carbonitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.42 
_cell.angle_gamma         90 
_cell.entry_id            6X86 
_cell.length_a            249.698 
_cell.length_b            64.712 
_cell.length_c            53.647 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X86 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,I,J,K 1 1 
D,E,F,H,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 70 A CYS 69 1_555 A SG CYS 102 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 70 B CYS 69 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 C SG CYS 70 C CYS 69 1_555 C SG CYS 102 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 D SG CYS 70 D CYS 69 1_555 D SG CYS 102 D CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 E SG CYS 70 E CYS 69 1_555 E SG CYS 102 E CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 F SG CYS 70 F CYS 69 1_555 F SG CYS 102 F CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C28 H29 N7 O3' 
_chem_comp.formula_weight    511.575 
_chem_comp.id                UTY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[(6-{2-[(3R)-4-(hydroxyacetyl)-3-methylpiperazin-1-yl]pyrimidin-5-yl}-2,2-dimethyl-3-oxo-2,3-dihydro-1H-indol-1-yl)methyl]pyridine-2-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C22 UTY doub 358 n y 
C23 N5 UTY sing 359 n y 
C22 C21 UTY sing 360 n y 
N5 C24 UTY doub 361 n y 
C21 C20 UTY doub 362 n y 
C24 C20 UTY sing 363 n y 
C24 C25 UTY sing 364 n n 
C20 C19 UTY sing 365 n n 
C25 N6 UTY trip 366 n n 
C18 C16 UTY sing 367 n n 
O C5 UTY doub 368 n n 
C19 N4 UTY sing 369 n n 
C C1 UTY sing 370 n n 
C1 C2 UTY sing 371 n n 
C1 N1 UTY sing 372 n n 
C2 N UTY sing 373 n n 
N2 C8 UTY doub 374 n y 
N2 C7 UTY sing 375 n y 
N4 C16 UTY sing 376 n n 
N4 C26 UTY sing 377 n n 
C8 C9 UTY sing 378 n y 
C5 N1 UTY sing 379 n n 
C5 C6 UTY sing 380 n n 
C16 C17 UTY sing 381 n n 
C16 C15 UTY sing 382 n n 
N1 C4 UTY sing 383 n n 
N C7 UTY sing 384 n n 
N C3 UTY sing 385 n n 
C27 C26 UTY doub 386 n y 
C27 C11 UTY sing 387 n y 
C26 C14 UTY sing 388 n y 
C7 N3 UTY doub 389 n y 
O1 C6 UTY sing 390 n n 
C9 C11 UTY sing 391 n n 
C9 C10 UTY doub 392 n y 
C15 O2 UTY doub 393 n n 
C15 C14 UTY sing 394 n n 
C11 C12 UTY doub 395 n y 
C14 C13 UTY doub 396 n y 
C3 C4 UTY sing 397 n n 
N3 C10 UTY sing 398 n y 
C12 C13 UTY sing 399 n y 
C4 H1 UTY sing 400 n n 
C4 H2 UTY sing 401 n n 
C6 H3 UTY sing 402 n n 
C6 H4 UTY sing 403 n n 
C8 H5 UTY sing 404 n n 
C10 H6 UTY sing 405 n n 
C13 H7 UTY sing 406 n n 
C17 H8 UTY sing 407 n n 
C17 H9 UTY sing 408 n n 
C17 H10 UTY sing 409 n n 
C21 H11 UTY sing 410 n n 
C22 H12 UTY sing 411 n n 
C23 H13 UTY sing 412 n n 
C19 H14 UTY sing 413 n n 
C19 H15 UTY sing 414 n n 
C18 H16 UTY sing 415 n n 
C18 H17 UTY sing 416 n n 
C18 H18 UTY sing 417 n n 
C12 H19 UTY sing 418 n n 
C27 H20 UTY sing 419 n n 
C2 H21 UTY sing 420 n n 
C2 H22 UTY sing 421 n n 
C3 H23 UTY sing 422 n n 
C3 H24 UTY sing 423 n n 
C1 H25 UTY sing 424 n n 
C H26 UTY sing 425 n n 
C H27 UTY sing 426 n n 
C H28 UTY sing 427 n n 
O1 H29 UTY sing 428 n n 
#
_atom_sites.entry_id                     6X86 
_atom_sites.fract_transf_matrix[1][1]    0.004005 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00031 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015453 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 UTY B 1 901 901 UTY LIG . 
H 2 UTY F 1 201 902 UTY LIG . 
I 3 HOH A 1 201 56 HOH HOH . 
I 3 HOH A 2 202 131 HOH HOH . 
I 3 HOH A 3 203 24 HOH HOH . 
I 3 HOH A 4 204 86 HOH HOH . 
I 3 HOH A 5 205 119 HOH HOH . 
I 3 HOH A 6 206 107 HOH HOH . 
I 3 HOH A 7 207 61 HOH HOH . 
I 3 HOH A 8 208 130 HOH HOH . 
I 3 HOH A 9 209 59 HOH HOH . 
I 3 HOH A 10 210 57 HOH HOH . 
I 3 HOH A 11 211 75 HOH HOH . 
I 3 HOH A 12 212 52 HOH HOH . 
I 3 HOH A 13 213 3 HOH HOH . 
I 3 HOH A 14 214 7 HOH HOH . 
I 3 HOH A 15 215 134 HOH HOH . 
I 3 HOH A 16 216 58 HOH HOH . 
I 3 HOH A 17 217 118 HOH HOH . 
J 3 HOH B 1 1001 8 HOH HOH . 
J 3 HOH B 2 1002 51 HOH HOH . 
J 3 HOH B 3 1003 29 HOH HOH . 
J 3 HOH B 4 1004 10 HOH HOH . 
J 3 HOH B 5 1005 109 HOH HOH . 
J 3 HOH B 6 1006 13 HOH HOH . 
J 3 HOH B 7 1007 17 HOH HOH . 
J 3 HOH B 8 1008 26 HOH HOH . 
J 3 HOH B 9 1009 30 HOH HOH . 
J 3 HOH B 10 1010 121 HOH HOH . 
J 3 HOH B 11 1011 96 HOH HOH . 
K 3 HOH C 1 201 16 HOH HOH . 
K 3 HOH C 2 202 5 HOH HOH . 
K 3 HOH C 3 203 89 HOH HOH . 
K 3 HOH C 4 204 90 HOH HOH . 
K 3 HOH C 5 205 94 HOH HOH . 
K 3 HOH C 6 206 31 HOH HOH . 
K 3 HOH C 7 207 53 HOH HOH . 
K 3 HOH C 8 208 64 HOH HOH . 
K 3 HOH C 9 209 65 HOH HOH . 
K 3 HOH C 10 210 48 HOH HOH . 
K 3 HOH C 11 211 102 HOH HOH . 
K 3 HOH C 12 212 137 HOH HOH . 
L 3 HOH D 1 201 14 HOH HOH . 
L 3 HOH D 2 202 105 HOH HOH . 
L 3 HOH D 3 203 50 HOH HOH . 
L 3 HOH D 4 204 37 HOH HOH . 
M 3 HOH E 1 201 139 HOH HOH . 
M 3 HOH E 2 202 93 HOH HOH . 
M 3 HOH E 3 203 40 HOH HOH . 
M 3 HOH E 4 204 44 HOH HOH . 
M 3 HOH E 5 205 100 HOH HOH . 
M 3 HOH E 6 206 55 HOH HOH . 
M 3 HOH E 7 207 27 HOH HOH . 
N 3 HOH F 1 301 2 HOH HOH . 
N 3 HOH F 2 302 97 HOH HOH . 
N 3 HOH F 3 303 12 HOH HOH . 
N 3 HOH F 4 304 4 HOH HOH . 
N 3 HOH F 5 305 60 HOH HOH . 
N 3 HOH F 6 306 82 HOH HOH . 
N 3 HOH F 7 307 103 HOH HOH . 
N 3 HOH F 8 308 117 HOH HOH . 
N 3 HOH F 9 309 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UTY . . . H 2 58.245 -2.221 6.928 1 88.08 ? N1 UTY 201 F 1 
HETATM 2 N N3 UTY . . . H 2 57.508 -6.973 7.484 1 83.29 ? N3 UTY 201 F 1 
HETATM 3 C C4 UTY . . . H 2 59.087 -3.419 7.065 1 86.13 ? C4 UTY 201 F 1 
HETATM 4 C C5 UTY . . . H 2 58.657 -0.971 6.585 1 91.94 ? C5 UTY 201 F 1 
HETATM 5 C C6 UTY . . . H 2 60.151 -0.71 6.434 1 96.89 ? C6 UTY 201 F 1 
HETATM 6 C C7 UTY . . . H 2 56.601 -6.046 7.109 1 85.6 ? C7 UTY 201 F 1 
HETATM 7 C C8 UTY . . . H 2 54.816 -7.332 7.712 1 83.54 ? C8 UTY 201 F 1 
HETATM 8 C C10 UTY . . . H 2 57.004 -8.098 8.018 1 81.68 ? C10 UTY 201 F 1 
HETATM 9 C C13 UTY . . . H 2 54.978 -12.017 8.913 1 68.73 ? C13 UTY 201 F 1 
HETATM 10 C C15 UTY . . . H 2 52.902 -12.937 10.219 1 71.47 ? C15 UTY 201 F 1 
HETATM 11 C C17 UTY . . . H 2 52.297 -12.543 12.663 1 57.05 ? C17 UTY 201 F 1 
HETATM 12 C C20 UTY . . . H 2 50.981 -8.583 11.099 1 62.09 ? C20 UTY 201 F 1 
HETATM 13 C C21 UTY . . . H 2 50.177 -8.92 10.01 1 60.85 ? C21 UTY 201 F 1 
HETATM 14 C C22 UTY . . . H 2 49.51 -7.936 9.3 1 61.68 ? C22 UTY 201 F 1 
HETATM 15 C C24 UTY . . . H 2 51.033 -7.223 11.445 1 64.41 ? C24 UTY 201 F 1 
HETATM 16 C C26 UTY . . . H 2 53.342 -10.669 10.064 1 71.31 ? C26 UTY 201 F 1 
HETATM 17 N N6 UTY . . . H 2 52.369 -6.414 13.522 1 57.58 ? N6 UTY 201 F 1 
HETATM 18 C C25 UTY . . . H 2 51.789 -6.798 12.61 1 62.66 ? C25 UTY 201 F 1 
HETATM 19 N N5 UTY . . . H 2 50.396 -6.242 10.766 1 66.33 ? N5 UTY 201 F 1 
HETATM 20 C C23 UTY . . . H 2 49.652 -6.621 9.707 1 65.27 ? C23 UTY 201 F 1 
HETATM 21 C C19 UTY . . . H 2 51.819 -9.649 11.764 1 67.09 ? C19 UTY 201 F 1 
HETATM 22 N N4 UTY . . . H 2 52.208 -10.773 10.903 1 70.12 ? N4 UTY 201 F 1 
HETATM 23 C C16 UTY . . . H 2 51.912 -12.202 11.226 1 64.2 ? C16 UTY 201 F 1 
HETATM 24 C C18 UTY . . . H 2 50.448 -12.536 10.952 1 58.45 ? C18 UTY 201 F 1 
HETATM 25 O O2 UTY . . . H 2 52.879 -14.132 9.995 1 75.29 ? O2 UTY 201 F 1 
HETATM 26 C C14 UTY . . . H 2 53.817 -11.926 9.683 1 70.77 ? C14 UTY 201 F 1 
HETATM 27 C C12 UTY . . . H 2 55.622 -10.853 8.51 1 71.13 ? C12 UTY 201 F 1 
HETATM 28 C C27 UTY . . . H 2 53.98 -9.506 9.649 1 74.04 ? C27 UTY 201 F 1 
HETATM 29 C C11 UTY . . . H 2 55.116 -9.582 8.83 1 75.56 ? C11 UTY 201 F 1 
HETATM 30 C C9 UTY . . . H 2 55.646 -8.351 8.175 1 80.05 ? C9 UTY 201 F 1 
HETATM 31 N N2 UTY . . . H 2 55.257 -6.177 7.189 1 85.68 ? N2 UTY 201 F 1 
HETATM 32 N N UTY . . . H 2 57.083 -4.822 6.74 1 86.3 ? N UTY 201 F 1 
HETATM 33 C C2 UTY . . . H 2 56.24 -3.631 6.607 1 86.67 ? C2 UTY 201 F 1 
HETATM 34 C C3 UTY . . . H 2 58.475 -4.607 6.325 1 86.78 ? C3 UTY 201 F 1 
HETATM 35 C C1 UTY . . . H 2 56.822 -2.391 7.276 1 87.79 ? C1 UTY 201 F 1 
HETATM 36 C C UTY . . . H 2 56.589 -2.337 8.782 1 86.74 ? C UTY 201 F 1 
HETATM 37 O O UTY . . . H 2 57.859 -0.068 6.353 1 89.99 ? O UTY 201 F 1 
HETATM 38 O O1 UTY . . . H 2 60.508 0.509 7.082 1 98.59 ? O1 UTY 201 F 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#