data_6X8P # _model_server_result.job_id qYz206cRyhhqB8Eix6RCAw _model_server_result.datetime_utc '2024-10-20 01:27:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 6X8P # _exptl.entry_id 6X8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X8P _cell.length_a 59.859 _cell.length_b 59.859 _cell.length_c 235.005 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 139 H CYS 140 1_555 A SG CYS 195 H CYS 196 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 139 H CYS 140 1_555 A SG CYS 195 H CYS 196 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 215 H CYS 216 1_555 B SG CYS 219 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 B SG CYS 139 L CYS 134 1_555 B SG CYS 199 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 139 L CYS 134 1_555 B SG CYS 199 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6X8P _atom_sites.fract_transf_matrix[1][1] 0.016706 _atom_sites.fract_transf_matrix[1][2] 0.009645 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO H 1 501 501 EDO EDO . E 4 EDO H 1 502 601 EDO EDO . F 4 EDO H 1 503 701 EDO EDO . G 4 EDO L 1 301 301 EDO EDO . H 4 EDO L 1 302 401 EDO EDO . I 4 EDO L 1 303 501 EDO EDO . J 5 HOH H 1 601 300 HOH HOH . J 5 HOH H 2 602 205 HOH HOH . J 5 HOH H 3 603 29 HOH HOH . J 5 HOH H 4 604 62 HOH HOH . J 5 HOH H 5 605 1 HOH HOH . J 5 HOH H 6 606 290 HOH HOH . J 5 HOH H 7 607 207 HOH HOH . J 5 HOH H 8 608 30 HOH HOH . J 5 HOH H 9 609 181 HOH HOH . J 5 HOH H 10 610 22 HOH HOH . J 5 HOH H 11 611 13 HOH HOH . J 5 HOH H 12 612 23 HOH HOH . J 5 HOH H 13 613 51 HOH HOH . J 5 HOH H 14 614 17 HOH HOH . J 5 HOH H 15 615 225 HOH HOH . J 5 HOH H 16 616 50 HOH HOH . J 5 HOH H 17 617 158 HOH HOH . J 5 HOH H 18 618 89 HOH HOH . J 5 HOH H 19 619 60 HOH HOH . J 5 HOH H 20 620 149 HOH HOH . J 5 HOH H 21 621 305 HOH HOH . J 5 HOH H 22 622 77 HOH HOH . J 5 HOH H 23 623 314 HOH HOH . J 5 HOH H 24 624 189 HOH HOH . J 5 HOH H 25 625 15 HOH HOH . J 5 HOH H 26 626 196 HOH HOH . J 5 HOH H 27 627 46 HOH HOH . J 5 HOH H 28 628 76 HOH HOH . J 5 HOH H 29 629 44 HOH HOH . J 5 HOH H 30 630 94 HOH HOH . J 5 HOH H 31 631 177 HOH HOH . J 5 HOH H 32 632 11 HOH HOH . J 5 HOH H 33 633 270 HOH HOH . J 5 HOH H 34 634 28 HOH HOH . J 5 HOH H 35 635 175 HOH HOH . J 5 HOH H 36 636 110 HOH HOH . J 5 HOH H 37 637 199 HOH HOH . J 5 HOH H 38 638 56 HOH HOH . J 5 HOH H 39 639 21 HOH HOH . J 5 HOH H 40 640 35 HOH HOH . J 5 HOH H 41 641 5 HOH HOH . J 5 HOH H 42 642 265 HOH HOH . J 5 HOH H 43 643 301 HOH HOH . J 5 HOH H 44 644 33 HOH HOH . J 5 HOH H 45 645 174 HOH HOH . J 5 HOH H 46 646 49 HOH HOH . J 5 HOH H 47 647 170 HOH HOH . J 5 HOH H 48 648 3 HOH HOH . J 5 HOH H 49 649 317 HOH HOH . J 5 HOH H 50 650 209 HOH HOH . J 5 HOH H 51 651 48 HOH HOH . J 5 HOH H 52 652 254 HOH HOH . J 5 HOH H 53 653 299 HOH HOH . J 5 HOH H 54 654 271 HOH HOH . J 5 HOH H 55 655 227 HOH HOH . J 5 HOH H 56 656 55 HOH HOH . J 5 HOH H 57 657 24 HOH HOH . J 5 HOH H 58 658 54 HOH HOH . J 5 HOH H 59 659 2 HOH HOH . J 5 HOH H 60 660 111 HOH HOH . J 5 HOH H 61 661 127 HOH HOH . J 5 HOH H 62 662 222 HOH HOH . J 5 HOH H 63 663 116 HOH HOH . J 5 HOH H 64 664 208 HOH HOH . J 5 HOH H 65 665 133 HOH HOH . J 5 HOH H 66 666 104 HOH HOH . J 5 HOH H 67 667 117 HOH HOH . J 5 HOH H 68 668 230 HOH HOH . J 5 HOH H 69 669 18 HOH HOH . J 5 HOH H 70 670 93 HOH HOH . J 5 HOH H 71 671 79 HOH HOH . J 5 HOH H 72 672 192 HOH HOH . J 5 HOH H 73 673 139 HOH HOH . J 5 HOH H 74 674 41 HOH HOH . J 5 HOH H 75 675 166 HOH HOH . J 5 HOH H 76 676 277 HOH HOH . J 5 HOH H 77 677 266 HOH HOH . J 5 HOH H 78 678 169 HOH HOH . J 5 HOH H 79 679 78 HOH HOH . J 5 HOH H 80 680 69 HOH HOH . J 5 HOH H 81 681 31 HOH HOH . J 5 HOH H 82 682 206 HOH HOH . J 5 HOH H 83 683 40 HOH HOH . J 5 HOH H 84 684 211 HOH HOH . J 5 HOH H 85 685 188 HOH HOH . J 5 HOH H 86 686 84 HOH HOH . J 5 HOH H 87 687 99 HOH HOH . J 5 HOH H 88 688 120 HOH HOH . J 5 HOH H 89 689 74 HOH HOH . J 5 HOH H 90 690 165 HOH HOH . J 5 HOH H 91 691 236 HOH HOH . J 5 HOH H 92 692 121 HOH HOH . J 5 HOH H 93 693 9 HOH HOH . J 5 HOH H 94 694 143 HOH HOH . J 5 HOH H 95 695 168 HOH HOH . J 5 HOH H 96 696 162 HOH HOH . J 5 HOH H 97 697 313 HOH HOH . J 5 HOH H 98 698 36 HOH HOH . J 5 HOH H 99 699 237 HOH HOH . J 5 HOH H 100 700 126 HOH HOH . J 5 HOH H 101 701 295 HOH HOH . J 5 HOH H 102 702 112 HOH HOH . J 5 HOH H 103 703 45 HOH HOH . J 5 HOH H 104 704 103 HOH HOH . J 5 HOH H 105 705 100 HOH HOH . J 5 HOH H 106 706 286 HOH HOH . J 5 HOH H 107 707 320 HOH HOH . J 5 HOH H 108 708 261 HOH HOH . J 5 HOH H 109 709 291 HOH HOH . J 5 HOH H 110 710 275 HOH HOH . J 5 HOH H 111 711 186 HOH HOH . J 5 HOH H 112 712 267 HOH HOH . J 5 HOH H 113 713 252 HOH HOH . J 5 HOH H 114 714 259 HOH HOH . J 5 HOH H 115 715 272 HOH HOH . J 5 HOH H 116 716 296 HOH HOH . J 5 HOH H 117 717 288 HOH HOH . J 5 HOH H 118 718 164 HOH HOH . J 5 HOH H 119 719 187 HOH HOH . J 5 HOH H 120 720 274 HOH HOH . J 5 HOH H 121 721 318 HOH HOH . J 5 HOH H 122 722 253 HOH HOH . J 5 HOH H 123 723 247 HOH HOH . J 5 HOH H 124 724 180 HOH HOH . J 5 HOH H 125 725 316 HOH HOH . J 5 HOH H 126 726 122 HOH HOH . J 5 HOH H 127 727 83 HOH HOH . K 5 HOH L 1 401 281 HOH HOH . K 5 HOH L 2 402 150 HOH HOH . K 5 HOH L 3 403 72 HOH HOH . K 5 HOH L 4 404 195 HOH HOH . K 5 HOH L 5 405 10 HOH HOH . K 5 HOH L 6 406 85 HOH HOH . K 5 HOH L 7 407 70 HOH HOH . K 5 HOH L 8 408 63 HOH HOH . K 5 HOH L 9 409 8 HOH HOH . K 5 HOH L 10 410 64 HOH HOH . K 5 HOH L 11 411 142 HOH HOH . K 5 HOH L 12 412 58 HOH HOH . K 5 HOH L 13 413 61 HOH HOH . K 5 HOH L 14 414 26 HOH HOH . K 5 HOH L 15 415 37 HOH HOH . K 5 HOH L 16 416 106 HOH HOH . K 5 HOH L 17 417 7 HOH HOH . K 5 HOH L 18 418 129 HOH HOH . K 5 HOH L 19 419 210 HOH HOH . K 5 HOH L 20 420 25 HOH HOH . K 5 HOH L 21 421 137 HOH HOH . K 5 HOH L 22 422 39 HOH HOH . K 5 HOH L 23 423 118 HOH HOH . K 5 HOH L 24 424 220 HOH HOH . K 5 HOH L 25 425 311 HOH HOH . K 5 HOH L 26 426 109 HOH HOH . K 5 HOH L 27 427 157 HOH HOH . K 5 HOH L 28 428 73 HOH HOH . K 5 HOH L 29 429 152 HOH HOH . K 5 HOH L 30 430 12 HOH HOH . K 5 HOH L 31 431 14 HOH HOH . K 5 HOH L 32 432 194 HOH HOH . K 5 HOH L 33 433 65 HOH HOH . K 5 HOH L 34 434 42 HOH HOH . K 5 HOH L 35 435 159 HOH HOH . K 5 HOH L 36 436 75 HOH HOH . K 5 HOH L 37 437 268 HOH HOH . K 5 HOH L 38 438 38 HOH HOH . K 5 HOH L 39 439 131 HOH HOH . K 5 HOH L 40 440 68 HOH HOH . K 5 HOH L 41 441 19 HOH HOH . K 5 HOH L 42 442 178 HOH HOH . K 5 HOH L 43 443 215 HOH HOH . K 5 HOH L 44 444 52 HOH HOH . K 5 HOH L 45 445 228 HOH HOH . K 5 HOH L 46 446 155 HOH HOH . K 5 HOH L 47 447 80 HOH HOH . K 5 HOH L 48 448 147 HOH HOH . K 5 HOH L 49 449 241 HOH HOH . K 5 HOH L 50 450 184 HOH HOH . K 5 HOH L 51 451 6 HOH HOH . K 5 HOH L 52 452 141 HOH HOH . K 5 HOH L 53 453 66 HOH HOH . K 5 HOH L 54 454 185 HOH HOH . K 5 HOH L 55 455 113 HOH HOH . K 5 HOH L 56 456 86 HOH HOH . K 5 HOH L 57 457 32 HOH HOH . K 5 HOH L 58 458 190 HOH HOH . K 5 HOH L 59 459 179 HOH HOH . K 5 HOH L 60 460 59 HOH HOH . K 5 HOH L 61 461 245 HOH HOH . K 5 HOH L 62 462 130 HOH HOH . K 5 HOH L 63 463 302 HOH HOH . K 5 HOH L 64 464 128 HOH HOH . K 5 HOH L 65 465 20 HOH HOH . K 5 HOH L 66 466 53 HOH HOH . K 5 HOH L 67 467 167 HOH HOH . K 5 HOH L 68 468 88 HOH HOH . K 5 HOH L 69 469 125 HOH HOH . K 5 HOH L 70 470 135 HOH HOH . K 5 HOH L 71 471 123 HOH HOH . K 5 HOH L 72 472 101 HOH HOH . K 5 HOH L 73 473 308 HOH HOH . K 5 HOH L 74 474 47 HOH HOH . K 5 HOH L 75 475 57 HOH HOH . K 5 HOH L 76 476 81 HOH HOH . K 5 HOH L 77 477 153 HOH HOH . K 5 HOH L 78 478 119 HOH HOH . K 5 HOH L 79 479 202 HOH HOH . K 5 HOH L 80 480 138 HOH HOH . K 5 HOH L 81 481 146 HOH HOH . K 5 HOH L 82 482 124 HOH HOH . K 5 HOH L 83 483 284 HOH HOH . K 5 HOH L 84 484 193 HOH HOH . K 5 HOH L 85 485 98 HOH HOH . K 5 HOH L 86 486 312 HOH HOH . K 5 HOH L 87 487 105 HOH HOH . K 5 HOH L 88 488 229 HOH HOH . K 5 HOH L 89 489 234 HOH HOH . K 5 HOH L 90 490 333 HOH HOH . K 5 HOH L 91 491 43 HOH HOH . K 5 HOH L 92 492 134 HOH HOH . K 5 HOH L 93 493 246 HOH HOH . K 5 HOH L 94 494 328 HOH HOH . K 5 HOH L 95 495 71 HOH HOH . K 5 HOH L 96 496 338 HOH HOH . K 5 HOH L 97 497 97 HOH HOH . K 5 HOH L 98 498 240 HOH HOH . K 5 HOH L 99 499 160 HOH HOH . K 5 HOH L 100 500 140 HOH HOH . K 5 HOH L 101 501 273 HOH HOH . K 5 HOH L 102 502 216 HOH HOH . K 5 HOH L 103 503 243 HOH HOH . K 5 HOH L 104 504 201 HOH HOH . K 5 HOH L 105 505 283 HOH HOH . K 5 HOH L 106 506 287 HOH HOH . K 5 HOH L 107 507 242 HOH HOH . K 5 HOH L 108 508 326 HOH HOH . K 5 HOH L 109 509 258 HOH HOH . K 5 HOH L 110 510 226 HOH HOH . K 5 HOH L 111 511 310 HOH HOH . K 5 HOH L 112 512 303 HOH HOH . K 5 HOH L 113 513 82 HOH HOH . K 5 HOH L 114 514 315 HOH HOH . K 5 HOH L 115 515 324 HOH HOH . K 5 HOH L 116 516 132 HOH HOH . K 5 HOH L 117 517 90 HOH HOH . K 5 HOH L 118 518 114 HOH HOH . K 5 HOH L 119 519 91 HOH HOH . K 5 HOH L 120 520 256 HOH HOH . K 5 HOH L 121 521 200 HOH HOH . K 5 HOH L 122 522 337 HOH HOH . L 5 HOH P 1 101 4 HOH HOH . L 5 HOH P 2 102 264 HOH HOH . L 5 HOH P 3 103 34 HOH HOH . L 5 HOH P 4 104 27 HOH HOH . L 5 HOH P 5 105 172 HOH HOH . L 5 HOH P 6 106 102 HOH HOH . L 5 HOH P 7 107 248 HOH HOH . L 5 HOH P 8 108 173 HOH HOH . L 5 HOH P 9 109 263 HOH HOH . L 5 HOH P 10 110 249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 40.065 -43.445 -54.722 1 67.74 ? C1 EDO 503 H 1 HETATM 2 O O1 EDO . . . F 4 40.316 -44.509 -53.795 1 68.13 ? O1 EDO 503 H 1 HETATM 3 C C2 EDO . . . F 4 41.377 -42.81 -55.177 1 67.44 ? C2 EDO 503 H 1 HETATM 4 O O2 EDO . . . F 4 42.092 -43.692 -56.055 1 65.93 ? O2 EDO 503 H 1 # _model_server_stats.io_time_ms 247 _model_server_stats.parse_time_ms 81 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 4 #