data_6X8X # _model_server_result.job_id CmpgQ73lnFXWkAgQGFVfDw _model_server_result.datetime_utc '2024-11-16 15:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6X8X # _exptl.entry_id 6X8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X8X _cell.length_a 82.172 _cell.length_b 82.172 _cell.length_c 48.072 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -41.086 71.163039 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -82.172 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 98 A CYS 98 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? covale ? covale2 A SG CYS 101 A CYS 101 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 A OE1 GLU 4 A GLU 4 1_555 F CA CA . A CA 205 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc2 A SD MET 7 A MET 7 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 A OE1 GLU 8 A GLU 8 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 A OE1 GLU 8 A GLU 8 1_555 E CA CA . A CA 204 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc5 A OE1 GLU 8 A GLU 8 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc6 A OD1 ASP 12 A ASP 12 1_555 H CA CA . A CA 207 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc7 A OD2 ASP 12 A ASP 12 1_555 H CA CA . A CA 207 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc8 A O LYS 19 A LYS 19 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc9 A O LYS 19 A LYS 19 1_555 D CA CA . A CA 203 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc10 A O LYS 19 A LYS 19 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc11 A O LYS 19 A LYS 19 1_555 G CA CA . A CA 206 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc12 A OD1 ASP 21 A ASP 21 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc13 A OD2 ASP 21 A ASP 21 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc14 A OD1 ASP 21 A ASP 21 1_555 D CA CA . A CA 203 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc15 A OD2 ASP 21 A ASP 21 1_555 D CA CA . A CA 203 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc16 A OD1 ASP 21 A ASP 21 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc17 A OD1 ASP 21 A ASP 21 1_555 G CA CA . A CA 206 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc18 A NE2 HIS 73 A HIS 73 1_555 C CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc19 A NE2 HIS 73 A HIS 73 1_555 C CU CU . A CU 202 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc20 A NE2 HIS 77 A HIS 77 1_555 C CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc21 A NE2 HIS 77 A HIS 77 1_555 C CU CU . A CU 202 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc22 A NE2 HIS 102 A HIS 102 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc23 B O1A HEC . A HEC 201 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc24 B O1A HEC . A HEC 201 1_555 E CA CA . A CA 204 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc25 D CA CA . A CA 203 1_555 I O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc26 D CA CA . A CA 203 1_555 I O HOH . A HOH 317 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc27 E CA CA . A CA 204 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc28 E CA CA . A CA 204 1_555 I O HOH . A HOH 303 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc29 G CA CA . A CA 206 1_555 I O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc30 G CA CA . A CA 206 1_555 I O HOH . A HOH 319 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6X8X _atom_sites.fract_transf_matrix[1][1] 0.01217 _atom_sites.fract_transf_matrix[1][2] 0.007026 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 150 HEC HEM . C 3 CU A 1 202 1 CU CU . D 4 CA A 1 203 1 CA CA . E 4 CA A 1 204 3 CA CA . F 4 CA A 1 205 4 CA CA . G 4 CA A 1 206 5 CA CA . H 4 CA A 1 207 6 CA CA . I 5 HOH A 1 301 25 HOH HOH . I 5 HOH A 2 302 6 HOH HOH . I 5 HOH A 3 303 22 HOH HOH . I 5 HOH A 4 304 17 HOH HOH . I 5 HOH A 5 305 11 HOH HOH . I 5 HOH A 6 306 10 HOH HOH . I 5 HOH A 7 307 13 HOH HOH . I 5 HOH A 8 308 8 HOH HOH . I 5 HOH A 9 309 15 HOH HOH . I 5 HOH A 10 310 16 HOH HOH . I 5 HOH A 11 311 18 HOH HOH . I 5 HOH A 12 312 2 HOH HOH . I 5 HOH A 13 313 19 HOH HOH . I 5 HOH A 14 314 1 HOH HOH . I 5 HOH A 15 315 20 HOH HOH . I 5 HOH A 16 316 24 HOH HOH . I 5 HOH A 17 317 5 HOH HOH . I 5 HOH A 18 318 21 HOH HOH . I 5 HOH A 19 319 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -31.016 _atom_site.Cartn_y 0 _atom_site.Cartn_z 24.036 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 66.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #