data_6X9H # _model_server_result.job_id u5CT7YTZ6pe7F5hjEwL7sw _model_server_result.datetime_utc '2025-01-09 19:10:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":502}' # _entry.id 6X9H # _exptl.entry_id 6X9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.419 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(3,4-dimethoxyphenoxy)phenyl]-1H-benzimidazole-6-carboximidamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X9H _cell.length_a 91.786 _cell.length_b 116.149 _cell.length_c 227.79 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 94 1_555 A SG CYS 170 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 148 A CYS 173 1_555 A SG CYS 155 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 A SG CYS 266 A CYS 291 1_555 A SG CYS 341 A CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 A SG CYS 284 A CYS 309 1_555 A SG CYS 337 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 A SG CYS 288 A CYS 313 1_555 A SG CYS 335 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 297 A CYS 322 1_555 A SG CYS 319 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf7 A SG CYS 299 A CYS 324 1_555 A SG CYS 311 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 B SG CYS 69 B CYS 94 1_555 B SG CYS 170 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf9 B SG CYS 148 B CYS 173 1_555 B SG CYS 155 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf10 B SG CYS 266 B CYS 291 1_555 B SG CYS 341 B CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf11 B SG CYS 284 B CYS 309 1_555 B SG CYS 337 B CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 B SG CYS 288 B CYS 313 1_555 B SG CYS 335 B CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf13 B SG CYS 297 B CYS 322 1_555 B SG CYS 319 B CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf14 B SG CYS 299 B CYS 324 1_555 B SG CYS 311 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 C SG CYS 69 C CYS 94 1_555 C SG CYS 170 C CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf16 C SG CYS 148 C CYS 173 1_555 C SG CYS 155 C CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf17 C SG CYS 266 C CYS 291 1_555 C SG CYS 341 C CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf18 C SG CYS 284 C CYS 309 1_555 C SG CYS 337 C CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf19 C SG CYS 288 C CYS 313 1_555 C SG CYS 335 C CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf20 C SG CYS 297 C CYS 322 1_555 C SG CYS 319 C CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf21 C SG CYS 299 C CYS 324 1_555 C SG CYS 311 C CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 342 A ASN 367 1_555 D C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale2 B ND2 ASN 342 B ASN 367 1_555 G C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C ND2 ASN 342 C ASN 367 1_555 I C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OD1 ASP 408 A ASP 433 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc2 F NA NA . A NA 503 1_555 B OD1 ASP 408 B ASP 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc3 F NA NA . A NA 503 1_555 C OD1 ASP 408 C ASP 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? # _chem_comp.formula 'C22 H20 N4 O3' _chem_comp.formula_weight 388.419 _chem_comp.id UZG _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(3,4-dimethoxyphenoxy)phenyl]-1H-benzimidazole-6-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N28 C27 UZG doub 386 n n N29 C27 UZG sing 387 n n C27 C23 UZG sing 388 n n C23 C24 UZG doub 389 n y C23 C22 UZG sing 390 n y C24 C25 UZG sing 391 n y C22 C21 UZG doub 392 n y C25 N26 UZG sing 393 n y C25 C20 UZG doub 394 n y C21 C20 UZG sing 395 n y N26 C18 UZG sing 396 n y C20 N19 UZG sing 397 n y C18 N19 UZG doub 398 n y C18 C15 UZG sing 399 n n C14 C15 UZG doub 400 n y C14 C13 UZG sing 401 n y C15 C16 UZG sing 402 n y C13 C12 UZG doub 403 n y C16 C17 UZG doub 404 n y C12 C17 UZG sing 405 n y C12 O11 UZG sing 406 n n O11 C06 UZG sing 407 n n C05 C06 UZG doub 408 n y C05 C04 UZG sing 409 n y C06 C07 UZG sing 410 n y C04 C03 UZG doub 411 n y C07 C08 UZG doub 412 n y C03 C08 UZG sing 413 n y C03 O02 UZG sing 414 n n C08 O09 UZG sing 415 n n C01 O02 UZG sing 416 n n O09 C10 UZG sing 417 n n C10 H1 UZG sing 418 n n C10 H2 UZG sing 419 n n C10 H3 UZG sing 420 n n C13 H4 UZG sing 421 n n C17 H5 UZG sing 422 n n C21 H6 UZG sing 423 n n C22 H7 UZG sing 424 n n C24 H8 UZG sing 425 n n C01 H9 UZG sing 426 n n C01 H10 UZG sing 427 n n C01 H11 UZG sing 428 n n C04 H12 UZG sing 429 n n C05 H13 UZG sing 430 n n C07 H14 UZG sing 431 n n C14 H15 UZG sing 432 n n C16 H16 UZG sing 433 n n N26 H18 UZG sing 434 n n N28 H19 UZG sing 435 n n N29 H20 UZG sing 436 n n N29 H21 UZG sing 437 n n # _atom_sites.entry_id 6X9H _atom_sites.fract_transf_matrix[1][1] 0.010895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 501 501 NAG NAG . E 3 UZG A 1 502 1 UZG LIG . F 4 NA A 1 503 1 NA NA . G 2 NAG B 1 501 501 NAG NAG . H 3 UZG B 1 502 1 UZG LIG . I 2 NAG C 1 501 501 NAG NAG . J 3 UZG C 1 502 1 UZG LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 UZG . . . J 3 5.617 3.75 10.321 1 82.06 ? C10 UZG 502 C 1 HETATM 2 C C13 UZG . . . J 3 8.306 1.11 4.861 1 89.17 ? C13 UZG 502 C 1 HETATM 3 C C15 UZG . . . J 3 6.305 1.561 3.625 1 80.33 ? C15 UZG 502 C 1 HETATM 4 C C17 UZG . . . J 3 6.879 2.914 5.556 1 82.02 ? C17 UZG 502 C 1 HETATM 5 C C20 UZG . . . J 3 3.748 1.375 1.02 1 74.17 ? C20 UZG 502 C 1 HETATM 6 C C21 UZG . . . J 3 2.529 1.574 0.319 1 74.4 ? C21 UZG 502 C 1 HETATM 7 C C22 UZG . . . J 3 2.375 1.008 -0.948 1 80.58 ? C22 UZG 502 C 1 HETATM 8 C C24 UZG . . . J 3 4.592 0.063 -0.843 1 77.3 ? C24 UZG 502 C 1 HETATM 9 C C01 UZG . . . J 3 9.58 7.512 10.321 1 84.02 ? C01 UZG 502 C 1 HETATM 10 C C03 UZG . . . J 3 8.505 5.698 9.249 1 88.18 ? C03 UZG 502 C 1 HETATM 11 C C04 UZG . . . J 3 9.508 5.632 8.287 1 86.41 ? C04 UZG 502 C 1 HETATM 12 C C05 UZG . . . J 3 9.643 4.52 7.471 1 83.81 ? C05 UZG 502 C 1 HETATM 13 C C06 UZG . . . J 3 8.752 3.473 7.602 1 84.97 ? C06 UZG 502 C 1 HETATM 14 C C07 UZG . . . J 3 7.753 3.528 8.571 1 87.58 ? C07 UZG 502 C 1 HETATM 15 C C08 UZG . . . J 3 7.614 4.645 9.394 1 86.42 ? C08 UZG 502 C 1 HETATM 16 C C12 UZG . . . J 3 8.02 2.147 5.742 1 83.43 ? C12 UZG 502 C 1 HETATM 17 C C14 UZG . . . J 3 7.464 0.824 3.793 1 87.96 ? C14 UZG 502 C 1 HETATM 18 C C16 UZG . . . J 3 6.034 2.626 4.484 1 82.5 ? C16 UZG 502 C 1 HETATM 19 C C18 UZG . . . J 3 5.402 1.292 2.418 1 73.89 ? C18 UZG 502 C 1 HETATM 20 C C23 UZG . . . J 3 3.401 0.253 -1.532 1 75.42 ? C23 UZG 502 C 1 HETATM 21 C C25 UZG . . . J 3 4.757 0.639 0.451 1 75.93 ? C25 UZG 502 C 1 HETATM 22 C C27 UZG . . . J 3 3.213 -0.324 -2.933 1 74.61 ? C27 UZG 502 C 1 HETATM 23 N N19 UZG . . . J 3 4.187 1.773 2.245 1 74.61 ? N19 UZG 502 C 1 HETATM 24 N N26 UZG . . . J 3 5.781 0.618 1.346 1 73.31 ? N26 UZG 502 C 1 HETATM 25 N N28 UZG . . . J 3 4.213 -0.634 -3.643 1 68.82 ? N28 UZG 502 C 1 HETATM 26 N N29 UZG . . . J 3 2.042 -0.422 -3.369 1 75.95 ? N29 UZG 502 C 1 HETATM 27 O O02 UZG . . . J 3 8.383 6.829 10.078 1 86.88 ? O02 UZG 502 C 1 HETATM 28 O O09 UZG . . . J 3 6.611 4.733 10.377 1 80.88 ? O09 UZG 502 C 1 HETATM 29 O O11 UZG . . . J 3 8.933 2.347 6.787 1 79.76 ? O11 UZG 502 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #