data_6X9L # _model_server_result.job_id 5yZU07rwGeMH8bipTzAFGA _model_server_result.datetime_utc '2025-03-09 02:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6X9L # _exptl.entry_id 6X9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.212 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description OCTANAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6X9L _cell.length_a 92.193 _cell.length_b 92.17 _cell.length_c 231.357 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2 B,E,F,H 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -92.193 0 -115.6785 3 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -92.17 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H16 O' _chem_comp.formula_weight 128.212 _chem_comp.id OYA _chem_comp.mon_nstd_flag . _chem_comp.name OCTANAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'OCTYL ALDEHYDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C5 OYA sing 312 n n C14 H141 OYA sing 313 n n C14 H142 OYA sing 314 n n C14 H143 OYA sing 315 n n C5 C6 OYA sing 316 n n C5 H51 OYA sing 317 n n C5 H52 OYA sing 318 n n C6 C11 OYA sing 319 n n C6 H61 OYA sing 320 n n C6 H62 OYA sing 321 n n C11 C7 OYA sing 322 n n C11 H111 OYA sing 323 n n C11 H112 OYA sing 324 n n C7 C8 OYA sing 325 n n C7 H71 OYA sing 326 n n C7 H72 OYA sing 327 n n C8 C9 OYA sing 328 n n C8 H81 OYA sing 329 n n C8 H82 OYA sing 330 n n C9 C10 OYA sing 331 n n C9 H91 OYA sing 332 n n C9 H92 OYA sing 333 n n C10 OAB OYA doub 334 n n C10 H10 OYA sing 335 n n # _atom_sites.entry_id 6X9L _atom_sites.fract_transf_matrix[1][1] 0.010847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OYA A 1 701 701 OYA OCT . D 3 NAD A 1 702 801 NAD NAD . E 2 OYA B 1 701 701 OYA OCT . F 3 NAD B 1 702 801 NAD NAD . G 4 HOH A 1 801 131 HOH HOH . G 4 HOH A 2 802 124 HOH HOH . G 4 HOH A 3 803 105 HOH HOH . G 4 HOH A 4 804 106 HOH HOH . G 4 HOH A 5 805 91 HOH HOH . G 4 HOH A 6 806 27 HOH HOH . G 4 HOH A 7 807 29 HOH HOH . G 4 HOH A 8 808 81 HOH HOH . G 4 HOH A 9 809 48 HOH HOH . G 4 HOH A 10 810 194 HOH HOH . G 4 HOH A 11 811 153 HOH HOH . G 4 HOH A 12 812 9 HOH HOH . G 4 HOH A 13 813 166 HOH HOH . G 4 HOH A 14 814 67 HOH HOH . G 4 HOH A 15 815 74 HOH HOH . G 4 HOH A 16 816 127 HOH HOH . G 4 HOH A 17 817 73 HOH HOH . G 4 HOH A 18 818 147 HOH HOH . G 4 HOH A 19 819 192 HOH HOH . G 4 HOH A 20 820 43 HOH HOH . G 4 HOH A 21 821 107 HOH HOH . G 4 HOH A 22 822 69 HOH HOH . G 4 HOH A 23 823 20 HOH HOH . G 4 HOH A 24 824 116 HOH HOH . G 4 HOH A 25 825 36 HOH HOH . G 4 HOH A 26 826 145 HOH HOH . G 4 HOH A 27 827 99 HOH HOH . G 4 HOH A 28 828 4 HOH HOH . G 4 HOH A 29 829 21 HOH HOH . G 4 HOH A 30 830 66 HOH HOH . G 4 HOH A 31 831 28 HOH HOH . G 4 HOH A 32 832 103 HOH HOH . G 4 HOH A 33 833 117 HOH HOH . G 4 HOH A 34 834 26 HOH HOH . G 4 HOH A 35 835 86 HOH HOH . G 4 HOH A 36 836 18 HOH HOH . G 4 HOH A 37 837 14 HOH HOH . G 4 HOH A 38 838 146 HOH HOH . G 4 HOH A 39 839 8 HOH HOH . G 4 HOH A 40 840 152 HOH HOH . G 4 HOH A 41 841 47 HOH HOH . G 4 HOH A 42 842 1 HOH HOH . G 4 HOH A 43 843 6 HOH HOH . G 4 HOH A 44 844 19 HOH HOH . G 4 HOH A 45 845 148 HOH HOH . G 4 HOH A 46 846 53 HOH HOH . G 4 HOH A 47 847 97 HOH HOH . G 4 HOH A 48 848 10 HOH HOH . G 4 HOH A 49 849 55 HOH HOH . G 4 HOH A 50 850 35 HOH HOH . G 4 HOH A 51 851 42 HOH HOH . G 4 HOH A 52 852 180 HOH HOH . G 4 HOH A 53 853 96 HOH HOH . G 4 HOH A 54 854 78 HOH HOH . G 4 HOH A 55 855 160 HOH HOH . G 4 HOH A 56 856 177 HOH HOH . G 4 HOH A 57 857 120 HOH HOH . G 4 HOH A 58 858 30 HOH HOH . G 4 HOH A 59 859 24 HOH HOH . G 4 HOH A 60 860 31 HOH HOH . G 4 HOH A 61 861 80 HOH HOH . G 4 HOH A 62 862 52 HOH HOH . G 4 HOH A 63 863 111 HOH HOH . G 4 HOH A 64 864 150 HOH HOH . G 4 HOH A 65 865 49 HOH HOH . G 4 HOH A 66 866 158 HOH HOH . G 4 HOH A 67 867 38 HOH HOH . G 4 HOH A 68 868 68 HOH HOH . G 4 HOH A 69 869 176 HOH HOH . G 4 HOH A 70 870 109 HOH HOH . G 4 HOH A 71 871 174 HOH HOH . G 4 HOH A 72 872 37 HOH HOH . G 4 HOH A 73 873 189 HOH HOH . G 4 HOH A 74 874 94 HOH HOH . G 4 HOH A 75 875 154 HOH HOH . G 4 HOH A 76 876 92 HOH HOH . G 4 HOH A 77 877 101 HOH HOH . G 4 HOH A 78 878 136 HOH HOH . G 4 HOH A 79 879 187 HOH HOH . G 4 HOH A 80 880 167 HOH HOH . G 4 HOH A 81 881 171 HOH HOH . G 4 HOH A 82 882 138 HOH HOH . G 4 HOH A 83 883 182 HOH HOH . G 4 HOH A 84 884 151 HOH HOH . G 4 HOH A 85 885 108 HOH HOH . G 4 HOH A 86 886 54 HOH HOH . G 4 HOH A 87 887 157 HOH HOH . G 4 HOH A 88 888 79 HOH HOH . G 4 HOH A 89 889 190 HOH HOH . G 4 HOH A 90 890 130 HOH HOH . G 4 HOH A 91 891 168 HOH HOH . G 4 HOH A 92 892 113 HOH HOH . G 4 HOH A 93 893 172 HOH HOH . G 4 HOH A 94 894 149 HOH HOH . G 4 HOH A 95 895 102 HOH HOH . H 4 HOH B 1 801 84 HOH HOH . H 4 HOH B 2 802 121 HOH HOH . H 4 HOH B 3 803 93 HOH HOH . H 4 HOH B 4 804 3 HOH HOH . H 4 HOH B 5 805 87 HOH HOH . H 4 HOH B 6 806 72 HOH HOH . H 4 HOH B 7 807 17 HOH HOH . H 4 HOH B 8 808 123 HOH HOH . H 4 HOH B 9 809 186 HOH HOH . H 4 HOH B 10 810 125 HOH HOH . H 4 HOH B 11 811 76 HOH HOH . H 4 HOH B 12 812 15 HOH HOH . H 4 HOH B 13 813 134 HOH HOH . H 4 HOH B 14 814 98 HOH HOH . H 4 HOH B 15 815 33 HOH HOH . H 4 HOH B 16 816 164 HOH HOH . H 4 HOH B 17 817 39 HOH HOH . H 4 HOH B 18 818 40 HOH HOH . H 4 HOH B 19 819 45 HOH HOH . H 4 HOH B 20 820 77 HOH HOH . H 4 HOH B 21 821 13 HOH HOH . H 4 HOH B 22 822 100 HOH HOH . H 4 HOH B 23 823 155 HOH HOH . H 4 HOH B 24 824 16 HOH HOH . H 4 HOH B 25 825 90 HOH HOH . H 4 HOH B 26 826 59 HOH HOH . H 4 HOH B 27 827 85 HOH HOH . H 4 HOH B 28 828 163 HOH HOH . H 4 HOH B 29 829 126 HOH HOH . H 4 HOH B 30 830 5 HOH HOH . H 4 HOH B 31 831 114 HOH HOH . H 4 HOH B 32 832 7 HOH HOH . H 4 HOH B 33 833 61 HOH HOH . H 4 HOH B 34 834 104 HOH HOH . H 4 HOH B 35 835 115 HOH HOH . H 4 HOH B 36 836 2 HOH HOH . H 4 HOH B 37 837 32 HOH HOH . H 4 HOH B 38 838 141 HOH HOH . H 4 HOH B 39 839 195 HOH HOH . H 4 HOH B 40 840 11 HOH HOH . H 4 HOH B 41 841 23 HOH HOH . H 4 HOH B 42 842 183 HOH HOH . H 4 HOH B 43 843 143 HOH HOH . H 4 HOH B 44 844 170 HOH HOH . H 4 HOH B 45 845 56 HOH HOH . H 4 HOH B 46 846 173 HOH HOH . H 4 HOH B 47 847 64 HOH HOH . H 4 HOH B 48 848 12 HOH HOH . H 4 HOH B 49 849 65 HOH HOH . H 4 HOH B 50 850 58 HOH HOH . H 4 HOH B 51 851 139 HOH HOH . H 4 HOH B 52 852 50 HOH HOH . H 4 HOH B 53 853 22 HOH HOH . H 4 HOH B 54 854 128 HOH HOH . H 4 HOH B 55 855 140 HOH HOH . H 4 HOH B 56 856 179 HOH HOH . H 4 HOH B 57 857 75 HOH HOH . H 4 HOH B 58 858 41 HOH HOH . H 4 HOH B 59 859 25 HOH HOH . H 4 HOH B 60 860 135 HOH HOH . H 4 HOH B 61 861 57 HOH HOH . H 4 HOH B 62 862 185 HOH HOH . H 4 HOH B 63 863 60 HOH HOH . H 4 HOH B 64 864 118 HOH HOH . H 4 HOH B 65 865 62 HOH HOH . H 4 HOH B 66 866 162 HOH HOH . H 4 HOH B 67 867 161 HOH HOH . H 4 HOH B 68 868 191 HOH HOH . H 4 HOH B 69 869 95 HOH HOH . H 4 HOH B 70 870 70 HOH HOH . H 4 HOH B 71 871 159 HOH HOH . H 4 HOH B 72 872 110 HOH HOH . H 4 HOH B 73 873 169 HOH HOH . H 4 HOH B 74 874 122 HOH HOH . H 4 HOH B 75 875 133 HOH HOH . H 4 HOH B 76 876 156 HOH HOH . H 4 HOH B 77 877 44 HOH HOH . H 4 HOH B 78 878 165 HOH HOH . H 4 HOH B 79 879 34 HOH HOH . H 4 HOH B 80 880 142 HOH HOH . H 4 HOH B 81 881 119 HOH HOH . H 4 HOH B 82 882 175 HOH HOH . H 4 HOH B 83 883 83 HOH HOH . H 4 HOH B 84 884 181 HOH HOH . H 4 HOH B 85 885 71 HOH HOH . H 4 HOH B 86 886 144 HOH HOH . H 4 HOH B 87 887 178 HOH HOH . H 4 HOH B 88 888 193 HOH HOH . H 4 HOH B 89 889 88 HOH HOH . H 4 HOH B 90 890 82 HOH HOH . H 4 HOH B 91 891 129 HOH HOH . H 4 HOH B 92 892 184 HOH HOH . H 4 HOH B 93 893 197 HOH HOH . H 4 HOH B 94 894 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 OYA . . . C 2 -21.276 1.463 -55.274 1 56.33 ? C14 OYA 701 A 1 HETATM 2 C C5 OYA . . . C 2 -21.965 0.111 -55.267 1 58.83 ? C5 OYA 701 A 1 HETATM 3 C C6 OYA . . . C 2 -23.015 0.101 -54.173 1 61.75 ? C6 OYA 701 A 1 HETATM 4 C C11 OYA . . . C 2 -23.371 -1.327 -53.83 1 55.4 ? C11 OYA 701 A 1 HETATM 5 C C7 OYA . . . C 2 -24.4 -1.88 -54.801 1 54.17 ? C7 OYA 701 A 1 HETATM 6 C C8 OYA . . . C 2 -24.777 -3.277 -54.312 1 54.66 ? C8 OYA 701 A 1 HETATM 7 C C9 OYA . . . C 2 -26.074 -3.787 -54.931 1 59.15 ? C9 OYA 701 A 1 HETATM 8 C C10 OYA . . . C 2 -25.817 -4.968 -55.845 1 59.9 ? C10 OYA 701 A 1 HETATM 9 O OAB OYA . . . C 2 -25.787 -6.091 -55.385 1 58.11 ? OAB OYA 701 A 1 HETATM 10 H H141 OYA . . . C 2 -20.854 1.617 -54.408 1 49.39 ? H141 OYA 701 A 1 HETATM 11 H H142 OYA . . . C 2 -20.597 1.478 -55.975 1 61.35 ? H142 OYA 701 A 1 HETATM 12 H H143 OYA . . . C 2 -21.935 2.163 -55.444 1 63.38 ? H143 OYA 701 A 1 HETATM 13 H H51 OYA . . . C 2 -21.308 -0.59 -55.096 1 64.5 ? H51 OYA 701 A 1 HETATM 14 H H52 OYA . . . C 2 -22.391 -0.043 -56.131 1 64.73 ? H52 OYA 701 A 1 HETATM 15 H H61 OYA . . . C 2 -23.813 0.569 -54.484 1 65.77 ? H61 OYA 701 A 1 HETATM 16 H H62 OYA . . . C 2 -22.663 0.548 -53.38 1 67.61 ? H62 OYA 701 A 1 HETATM 17 H H111 OYA . . . C 2 -22.566 -1.876 -53.869 1 67.49 ? H111 OYA 701 A 1 HETATM 18 H H112 OYA . . . C 2 -23.736 -1.357 -52.925 1 67.67 ? H112 OYA 701 A 1 HETATM 19 H H71 OYA . . . C 2 -25.19 -1.306 -54.81 1 66.61 ? H71 OYA 701 A 1 HETATM 20 H H72 OYA . . . C 2 -24.016 -1.933 -55.697 1 65.41 ? H72 OYA 701 A 1 HETATM 21 H H81 OYA . . . C 2 -24.056 -3.894 -54.538 1 64.52 ? H81 OYA 701 A 1 HETATM 22 H H82 OYA . . . C 2 -24.88 -3.254 -53.342 1 68.44 ? H82 OYA 701 A 1 HETATM 23 H H91 OYA . . . C 2 -26.487 -3.069 -55.446 1 71.56 ? H91 OYA 701 A 1 HETATM 24 H H92 OYA . . . C 2 -26.682 -4.061 -54.219 1 67.87 ? H92 OYA 701 A 1 HETATM 25 H H10 OYA . . . C 2 -25.676 -4.827 -56.8 1 68.05 ? H10 OYA 701 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #