data_6X9Y
#
_model_server_result.job_id            5BsEcgRodURoG1Ks2N5UAA 
_model_server_result.datetime_utc      '2024-11-28 23:39:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x9y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    6X9Y 
#
_exptl.entry_id    6X9Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6X9Y 
_cell.length_a            128.176 
_cell.length_b            128.176 
_cell.length_c            92.761 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X9Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    'P 6c' 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,P 1 1 
B,I,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     6X9Y 
_atom_sites.fract_transf_matrix[1][1]    0.007802 
_atom_sites.fract_transf_matrix[1][2]    0.004504 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01078 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 4 GOL GOL . 
D 2 GOL A 1 402 5 GOL GOL . 
E 2 GOL A 1 403 6 GOL GOL . 
F 2 GOL A 1 404 7 GOL GOL . 
G 3 SO4 A 1 405 3 SO4 SO4 . 
H 3 SO4 A 1 406 6 SO4 SO4 . 
I 2 GOL B 1 401 1 GOL GOL . 
J 2 GOL B 1 402 2 GOL GOL . 
K 2 GOL B 1 403 3 GOL GOL . 
L 4 SRT B 1 404 1 SRT SRT . 
M 3 SO4 B 1 405 4 SO4 SO4 . 
N 3 SO4 B 1 406 5 SO4 SO4 . 
O 3 SO4 B 1 407 7 SO4 SO4 . 
P 5 HOH A 1 501 148 HOH HOH . 
P 5 HOH A 2 502 220 HOH HOH . 
P 5 HOH A 3 503 242 HOH HOH . 
P 5 HOH A 4 504 140 HOH HOH . 
P 5 HOH A 5 505 106 HOH HOH . 
P 5 HOH A 6 506 138 HOH HOH . 
P 5 HOH A 7 507 93 HOH HOH . 
P 5 HOH A 8 508 229 HOH HOH . 
P 5 HOH A 9 509 114 HOH HOH . 
P 5 HOH A 10 510 115 HOH HOH . 
P 5 HOH A 11 511 160 HOH HOH . 
P 5 HOH A 12 512 226 HOH HOH . 
P 5 HOH A 13 513 210 HOH HOH . 
P 5 HOH A 14 514 180 HOH HOH . 
P 5 HOH A 15 515 15 HOH HOH . 
P 5 HOH A 16 516 21 HOH HOH . 
P 5 HOH A 17 517 47 HOH HOH . 
P 5 HOH A 18 518 183 HOH HOH . 
P 5 HOH A 19 519 26 HOH HOH . 
P 5 HOH A 20 520 57 HOH HOH . 
P 5 HOH A 21 521 233 HOH HOH . 
P 5 HOH A 22 522 94 HOH HOH . 
P 5 HOH A 23 523 154 HOH HOH . 
P 5 HOH A 24 524 52 HOH HOH . 
P 5 HOH A 25 525 199 HOH HOH . 
P 5 HOH A 26 526 230 HOH HOH . 
P 5 HOH A 27 527 29 HOH HOH . 
P 5 HOH A 28 528 131 HOH HOH . 
P 5 HOH A 29 529 235 HOH HOH . 
P 5 HOH A 30 530 79 HOH HOH . 
P 5 HOH A 31 531 170 HOH HOH . 
P 5 HOH A 32 532 8 HOH HOH . 
P 5 HOH A 33 533 3 HOH HOH . 
P 5 HOH A 34 534 5 HOH HOH . 
P 5 HOH A 35 535 76 HOH HOH . 
P 5 HOH A 36 536 100 HOH HOH . 
P 5 HOH A 37 537 74 HOH HOH . 
P 5 HOH A 38 538 56 HOH HOH . 
P 5 HOH A 39 539 144 HOH HOH . 
P 5 HOH A 40 540 113 HOH HOH . 
P 5 HOH A 41 541 22 HOH HOH . 
P 5 HOH A 42 542 33 HOH HOH . 
P 5 HOH A 43 543 82 HOH HOH . 
P 5 HOH A 44 544 55 HOH HOH . 
P 5 HOH A 45 545 11 HOH HOH . 
P 5 HOH A 46 546 6 HOH HOH . 
P 5 HOH A 47 547 25 HOH HOH . 
P 5 HOH A 48 548 232 HOH HOH . 
P 5 HOH A 49 549 151 HOH HOH . 
P 5 HOH A 50 550 97 HOH HOH . 
P 5 HOH A 51 551 67 HOH HOH . 
P 5 HOH A 52 552 159 HOH HOH . 
P 5 HOH A 53 553 49 HOH HOH . 
P 5 HOH A 54 554 174 HOH HOH . 
P 5 HOH A 55 555 173 HOH HOH . 
P 5 HOH A 56 556 99 HOH HOH . 
P 5 HOH A 57 557 161 HOH HOH . 
P 5 HOH A 58 558 177 HOH HOH . 
P 5 HOH A 59 559 53 HOH HOH . 
P 5 HOH A 60 560 118 HOH HOH . 
P 5 HOH A 61 561 73 HOH HOH . 
P 5 HOH A 62 562 121 HOH HOH . 
P 5 HOH A 63 563 200 HOH HOH . 
P 5 HOH A 64 564 132 HOH HOH . 
P 5 HOH A 65 565 172 HOH HOH . 
P 5 HOH A 66 566 85 HOH HOH . 
P 5 HOH A 67 567 27 HOH HOH . 
P 5 HOH A 68 568 150 HOH HOH . 
P 5 HOH A 69 569 63 HOH HOH . 
P 5 HOH A 70 570 155 HOH HOH . 
P 5 HOH A 71 571 162 HOH HOH . 
P 5 HOH A 72 572 126 HOH HOH . 
P 5 HOH A 73 573 104 HOH HOH . 
P 5 HOH A 74 574 4 HOH HOH . 
P 5 HOH A 75 575 203 HOH HOH . 
P 5 HOH A 76 576 16 HOH HOH . 
P 5 HOH A 77 577 42 HOH HOH . 
P 5 HOH A 78 578 130 HOH HOH . 
P 5 HOH A 79 579 54 HOH HOH . 
P 5 HOH A 80 580 37 HOH HOH . 
P 5 HOH A 81 581 225 HOH HOH . 
P 5 HOH A 82 582 212 HOH HOH . 
P 5 HOH A 83 583 39 HOH HOH . 
P 5 HOH A 84 584 166 HOH HOH . 
P 5 HOH A 85 585 91 HOH HOH . 
P 5 HOH A 86 586 145 HOH HOH . 
P 5 HOH A 87 587 111 HOH HOH . 
P 5 HOH A 88 588 98 HOH HOH . 
P 5 HOH A 89 589 80 HOH HOH . 
P 5 HOH A 90 590 24 HOH HOH . 
P 5 HOH A 91 591 60 HOH HOH . 
P 5 HOH A 92 592 141 HOH HOH . 
P 5 HOH A 93 593 219 HOH HOH . 
P 5 HOH A 94 594 147 HOH HOH . 
P 5 HOH A 95 595 110 HOH HOH . 
P 5 HOH A 96 596 40 HOH HOH . 
P 5 HOH A 97 597 218 HOH HOH . 
P 5 HOH A 98 598 103 HOH HOH . 
P 5 HOH A 99 599 213 HOH HOH . 
P 5 HOH A 100 600 193 HOH HOH . 
P 5 HOH A 101 601 43 HOH HOH . 
P 5 HOH A 102 602 207 HOH HOH . 
P 5 HOH A 103 603 182 HOH HOH . 
P 5 HOH A 104 604 181 HOH HOH . 
P 5 HOH A 105 605 215 HOH HOH . 
P 5 HOH A 106 606 204 HOH HOH . 
P 5 HOH A 107 607 101 HOH HOH . 
P 5 HOH A 108 608 119 HOH HOH . 
P 5 HOH A 109 609 137 HOH HOH . 
P 5 HOH A 110 610 95 HOH HOH . 
P 5 HOH A 111 611 17 HOH HOH . 
P 5 HOH A 112 612 244 HOH HOH . 
P 5 HOH A 113 613 71 HOH HOH . 
P 5 HOH A 114 614 205 HOH HOH . 
P 5 HOH A 115 615 62 HOH HOH . 
P 5 HOH A 116 616 190 HOH HOH . 
Q 5 HOH B 1 501 153 HOH HOH . 
Q 5 HOH B 2 502 89 HOH HOH . 
Q 5 HOH B 3 503 20 HOH HOH . 
Q 5 HOH B 4 504 134 HOH HOH . 
Q 5 HOH B 5 505 142 HOH HOH . 
Q 5 HOH B 6 506 143 HOH HOH . 
Q 5 HOH B 7 507 156 HOH HOH . 
Q 5 HOH B 8 508 139 HOH HOH . 
Q 5 HOH B 9 509 64 HOH HOH . 
Q 5 HOH B 10 510 41 HOH HOH . 
Q 5 HOH B 11 511 50 HOH HOH . 
Q 5 HOH B 12 512 120 HOH HOH . 
Q 5 HOH B 13 513 86 HOH HOH . 
Q 5 HOH B 14 514 13 HOH HOH . 
Q 5 HOH B 15 515 243 HOH HOH . 
Q 5 HOH B 16 516 35 HOH HOH . 
Q 5 HOH B 17 517 61 HOH HOH . 
Q 5 HOH B 18 518 88 HOH HOH . 
Q 5 HOH B 19 519 136 HOH HOH . 
Q 5 HOH B 20 520 223 HOH HOH . 
Q 5 HOH B 21 521 112 HOH HOH . 
Q 5 HOH B 22 522 123 HOH HOH . 
Q 5 HOH B 23 523 12 HOH HOH . 
Q 5 HOH B 24 524 31 HOH HOH . 
Q 5 HOH B 25 525 108 HOH HOH . 
Q 5 HOH B 26 526 152 HOH HOH . 
Q 5 HOH B 27 527 2 HOH HOH . 
Q 5 HOH B 28 528 211 HOH HOH . 
Q 5 HOH B 29 529 65 HOH HOH . 
Q 5 HOH B 30 530 197 HOH HOH . 
Q 5 HOH B 31 531 239 HOH HOH . 
Q 5 HOH B 32 532 184 HOH HOH . 
Q 5 HOH B 33 533 10 HOH HOH . 
Q 5 HOH B 34 534 135 HOH HOH . 
Q 5 HOH B 35 535 66 HOH HOH . 
Q 5 HOH B 36 536 122 HOH HOH . 
Q 5 HOH B 37 537 44 HOH HOH . 
Q 5 HOH B 38 538 30 HOH HOH . 
Q 5 HOH B 39 539 201 HOH HOH . 
Q 5 HOH B 40 540 9 HOH HOH . 
Q 5 HOH B 41 541 75 HOH HOH . 
Q 5 HOH B 42 542 224 HOH HOH . 
Q 5 HOH B 43 543 133 HOH HOH . 
Q 5 HOH B 44 544 87 HOH HOH . 
Q 5 HOH B 45 545 234 HOH HOH . 
Q 5 HOH B 46 546 92 HOH HOH . 
Q 5 HOH B 47 547 102 HOH HOH . 
Q 5 HOH B 48 548 58 HOH HOH . 
Q 5 HOH B 49 549 208 HOH HOH . 
Q 5 HOH B 50 550 77 HOH HOH . 
Q 5 HOH B 51 551 165 HOH HOH . 
Q 5 HOH B 52 552 171 HOH HOH . 
Q 5 HOH B 53 553 146 HOH HOH . 
Q 5 HOH B 54 554 192 HOH HOH . 
Q 5 HOH B 55 555 167 HOH HOH . 
Q 5 HOH B 56 556 176 HOH HOH . 
Q 5 HOH B 57 557 70 HOH HOH . 
Q 5 HOH B 58 558 32 HOH HOH . 
Q 5 HOH B 59 559 48 HOH HOH . 
Q 5 HOH B 60 560 149 HOH HOH . 
Q 5 HOH B 61 561 38 HOH HOH . 
Q 5 HOH B 62 562 90 HOH HOH . 
Q 5 HOH B 63 563 175 HOH HOH . 
Q 5 HOH B 64 564 157 HOH HOH . 
Q 5 HOH B 65 565 51 HOH HOH . 
Q 5 HOH B 66 566 206 HOH HOH . 
Q 5 HOH B 67 567 107 HOH HOH . 
Q 5 HOH B 68 568 81 HOH HOH . 
Q 5 HOH B 69 569 117 HOH HOH . 
Q 5 HOH B 70 570 188 HOH HOH . 
Q 5 HOH B 71 571 189 HOH HOH . 
Q 5 HOH B 72 572 129 HOH HOH . 
Q 5 HOH B 73 573 228 HOH HOH . 
Q 5 HOH B 74 574 105 HOH HOH . 
Q 5 HOH B 75 575 7 HOH HOH . 
Q 5 HOH B 76 576 19 HOH HOH . 
Q 5 HOH B 77 577 28 HOH HOH . 
Q 5 HOH B 78 578 241 HOH HOH . 
Q 5 HOH B 79 579 45 HOH HOH . 
Q 5 HOH B 80 580 1 HOH HOH . 
Q 5 HOH B 81 581 236 HOH HOH . 
Q 5 HOH B 82 582 23 HOH HOH . 
Q 5 HOH B 83 583 68 HOH HOH . 
Q 5 HOH B 84 584 169 HOH HOH . 
Q 5 HOH B 85 585 198 HOH HOH . 
Q 5 HOH B 86 586 240 HOH HOH . 
Q 5 HOH B 87 587 187 HOH HOH . 
Q 5 HOH B 88 588 34 HOH HOH . 
Q 5 HOH B 89 589 78 HOH HOH . 
Q 5 HOH B 90 590 163 HOH HOH . 
Q 5 HOH B 91 591 18 HOH HOH . 
Q 5 HOH B 92 592 72 HOH HOH . 
Q 5 HOH B 93 593 164 HOH HOH . 
Q 5 HOH B 94 594 96 HOH HOH . 
Q 5 HOH B 95 595 185 HOH HOH . 
Q 5 HOH B 96 596 202 HOH HOH . 
Q 5 HOH B 97 597 245 HOH HOH . 
Q 5 HOH B 98 598 191 HOH HOH . 
Q 5 HOH B 99 599 194 HOH HOH . 
Q 5 HOH B 100 600 186 HOH HOH . 
Q 5 HOH B 101 601 227 HOH HOH . 
Q 5 HOH B 102 602 231 HOH HOH . 
Q 5 HOH B 103 603 83 HOH HOH . 
Q 5 HOH B 104 604 237 HOH HOH . 
Q 5 HOH B 105 605 179 HOH HOH . 
Q 5 HOH B 106 606 128 HOH HOH . 
Q 5 HOH B 107 607 125 HOH HOH . 
Q 5 HOH B 108 608 222 HOH HOH . 
Q 5 HOH B 109 609 209 HOH HOH . 
Q 5 HOH B 110 610 217 HOH HOH . 
Q 5 HOH B 111 611 178 HOH HOH . 
Q 5 HOH B 112 612 59 HOH HOH . 
Q 5 HOH B 113 613 214 HOH HOH . 
Q 5 HOH B 114 614 69 HOH HOH . 
Q 5 HOH B 115 615 116 HOH HOH . 
Q 5 HOH B 116 616 46 HOH HOH . 
Q 5 HOH B 117 617 216 HOH HOH . 
Q 5 HOH B 118 618 84 HOH HOH . 
Q 5 HOH B 119 619 36 HOH HOH . 
Q 5 HOH B 120 620 158 HOH HOH . 
Q 5 HOH B 121 621 195 HOH HOH . 
Q 5 HOH B 122 622 127 HOH HOH . 
Q 5 HOH B 123 623 196 HOH HOH . 
Q 5 HOH B 124 624 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 -10.737 -62.988 3.452 1 96.79 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . E 2 -9.684 -62.682 2.563 1 95.84 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . E 2 -11.908 -62.038 3.228 1 94.74 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . E 2 -12.258 -61.997 1.872 1 102.36 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . E 2 -13.13 -62.515 3.984 1 85.66 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . E 2 -13.371 -61.589 5.007 1 80.12 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#