data_6XA4 # _model_server_result.job_id Tejo5b4ZKKtWTqWYmykpZw _model_server_result.datetime_utc '2024-11-08 15:06:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xa4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6XA4 # _exptl.entry_id 6XA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.71 _cell.angle_gamma 90 _cell.entry_id 6XA4 _cell.length_a 113.538 _cell.length_b 54.204 _cell.length_c 45.414 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 147 A CYS 145 1_555 B C UXS 4 B UXS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.696 ? covale ? covale2 B C ACE 1 B ACE 1 1_555 B N LEU 2 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale3 B C LEU 3 B LEU 3 1_555 B N UXS 4 B UXS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 6XA4 _atom_sites.fract_transf_matrix[1][1] 0.008808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001665 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 501 501 GOL GOL . D 4 HOH A 1 601 250 HOH HOH . D 4 HOH A 2 602 82 HOH HOH . D 4 HOH A 3 603 229 HOH HOH . D 4 HOH A 4 604 73 HOH HOH . D 4 HOH A 5 605 254 HOH HOH . D 4 HOH A 6 606 88 HOH HOH . D 4 HOH A 7 607 96 HOH HOH . D 4 HOH A 8 608 23 HOH HOH . D 4 HOH A 9 609 69 HOH HOH . D 4 HOH A 10 610 273 HOH HOH . D 4 HOH A 11 611 251 HOH HOH . D 4 HOH A 12 612 118 HOH HOH . D 4 HOH A 13 613 257 HOH HOH . D 4 HOH A 14 614 279 HOH HOH . D 4 HOH A 15 615 258 HOH HOH . D 4 HOH A 16 616 61 HOH HOH . D 4 HOH A 17 617 93 HOH HOH . D 4 HOH A 18 618 83 HOH HOH . D 4 HOH A 19 619 122 HOH HOH . D 4 HOH A 20 620 99 HOH HOH . D 4 HOH A 21 621 6 HOH HOH . D 4 HOH A 22 622 37 HOH HOH . D 4 HOH A 23 623 175 HOH HOH . D 4 HOH A 24 624 260 HOH HOH . D 4 HOH A 25 625 269 HOH HOH . D 4 HOH A 26 626 14 HOH HOH . D 4 HOH A 27 627 46 HOH HOH . D 4 HOH A 28 628 268 HOH HOH . D 4 HOH A 29 629 60 HOH HOH . D 4 HOH A 30 630 35 HOH HOH . D 4 HOH A 31 631 180 HOH HOH . D 4 HOH A 32 632 3 HOH HOH . D 4 HOH A 33 633 262 HOH HOH . D 4 HOH A 34 634 7 HOH HOH . D 4 HOH A 35 635 42 HOH HOH . D 4 HOH A 36 636 28 HOH HOH . D 4 HOH A 37 637 98 HOH HOH . D 4 HOH A 38 638 75 HOH HOH . D 4 HOH A 39 639 2 HOH HOH . D 4 HOH A 40 640 193 HOH HOH . D 4 HOH A 41 641 18 HOH HOH . D 4 HOH A 42 642 174 HOH HOH . D 4 HOH A 43 643 84 HOH HOH . D 4 HOH A 44 644 147 HOH HOH . D 4 HOH A 45 645 72 HOH HOH . D 4 HOH A 46 646 58 HOH HOH . D 4 HOH A 47 647 67 HOH HOH . D 4 HOH A 48 648 211 HOH HOH . D 4 HOH A 49 649 80 HOH HOH . D 4 HOH A 50 650 32 HOH HOH . D 4 HOH A 51 651 12 HOH HOH . D 4 HOH A 52 652 31 HOH HOH . D 4 HOH A 53 653 4 HOH HOH . D 4 HOH A 54 654 186 HOH HOH . D 4 HOH A 55 655 8 HOH HOH . D 4 HOH A 56 656 270 HOH HOH . D 4 HOH A 57 657 76 HOH HOH . D 4 HOH A 58 658 104 HOH HOH . D 4 HOH A 59 659 9 HOH HOH . D 4 HOH A 60 660 16 HOH HOH . D 4 HOH A 61 661 26 HOH HOH . D 4 HOH A 62 662 106 HOH HOH . D 4 HOH A 63 663 81 HOH HOH . D 4 HOH A 64 664 89 HOH HOH . D 4 HOH A 65 665 138 HOH HOH . D 4 HOH A 66 666 103 HOH HOH . D 4 HOH A 67 667 92 HOH HOH . D 4 HOH A 68 668 94 HOH HOH . D 4 HOH A 69 669 280 HOH HOH . D 4 HOH A 70 670 71 HOH HOH . D 4 HOH A 71 671 22 HOH HOH . D 4 HOH A 72 672 56 HOH HOH . D 4 HOH A 73 673 34 HOH HOH . D 4 HOH A 74 674 109 HOH HOH . D 4 HOH A 75 675 107 HOH HOH . D 4 HOH A 76 676 181 HOH HOH . D 4 HOH A 77 677 263 HOH HOH . D 4 HOH A 78 678 52 HOH HOH . D 4 HOH A 79 679 97 HOH HOH . D 4 HOH A 80 680 79 HOH HOH . D 4 HOH A 81 681 65 HOH HOH . D 4 HOH A 82 682 11 HOH HOH . D 4 HOH A 83 683 87 HOH HOH . D 4 HOH A 84 684 51 HOH HOH . D 4 HOH A 85 685 248 HOH HOH . D 4 HOH A 86 686 33 HOH HOH . D 4 HOH A 87 687 5 HOH HOH . D 4 HOH A 88 688 216 HOH HOH . D 4 HOH A 89 689 274 HOH HOH . D 4 HOH A 90 690 64 HOH HOH . D 4 HOH A 91 691 39 HOH HOH . D 4 HOH A 92 692 278 HOH HOH . D 4 HOH A 93 693 48 HOH HOH . D 4 HOH A 94 694 121 HOH HOH . D 4 HOH A 95 695 267 HOH HOH . D 4 HOH A 96 696 53 HOH HOH . D 4 HOH A 97 697 255 HOH HOH . D 4 HOH A 98 698 1 HOH HOH . D 4 HOH A 99 699 24 HOH HOH . D 4 HOH A 100 700 49 HOH HOH . D 4 HOH A 101 701 19 HOH HOH . D 4 HOH A 102 702 27 HOH HOH . D 4 HOH A 103 703 169 HOH HOH . D 4 HOH A 104 704 276 HOH HOH . D 4 HOH A 105 705 172 HOH HOH . D 4 HOH A 106 706 243 HOH HOH . D 4 HOH A 107 707 100 HOH HOH . D 4 HOH A 108 708 116 HOH HOH . D 4 HOH A 109 709 114 HOH HOH . D 4 HOH A 110 710 40 HOH HOH . D 4 HOH A 111 711 95 HOH HOH . D 4 HOH A 112 712 141 HOH HOH . D 4 HOH A 113 713 25 HOH HOH . D 4 HOH A 114 714 136 HOH HOH . D 4 HOH A 115 715 50 HOH HOH . D 4 HOH A 116 716 112 HOH HOH . D 4 HOH A 117 717 124 HOH HOH . D 4 HOH A 118 718 253 HOH HOH . D 4 HOH A 119 719 55 HOH HOH . D 4 HOH A 120 720 145 HOH HOH . D 4 HOH A 121 721 271 HOH HOH . D 4 HOH A 122 722 155 HOH HOH . D 4 HOH A 123 723 30 HOH HOH . D 4 HOH A 124 724 68 HOH HOH . D 4 HOH A 125 725 21 HOH HOH . D 4 HOH A 126 726 164 HOH HOH . D 4 HOH A 127 727 272 HOH HOH . D 4 HOH A 128 728 275 HOH HOH . D 4 HOH A 129 729 45 HOH HOH . D 4 HOH A 130 730 247 HOH HOH . D 4 HOH A 131 731 277 HOH HOH . D 4 HOH A 132 732 90 HOH HOH . D 4 HOH A 133 733 15 HOH HOH . D 4 HOH A 134 734 195 HOH HOH . D 4 HOH A 135 735 261 HOH HOH . D 4 HOH A 136 736 101 HOH HOH . D 4 HOH A 137 737 245 HOH HOH . D 4 HOH A 138 738 123 HOH HOH . D 4 HOH A 139 739 266 HOH HOH . D 4 HOH A 140 740 167 HOH HOH . D 4 HOH A 141 741 43 HOH HOH . D 4 HOH A 142 742 29 HOH HOH . D 4 HOH A 143 743 259 HOH HOH . D 4 HOH A 144 744 111 HOH HOH . D 4 HOH A 145 745 240 HOH HOH . D 4 HOH A 146 746 244 HOH HOH . D 4 HOH A 147 747 264 HOH HOH . D 4 HOH A 148 748 120 HOH HOH . D 4 HOH A 149 749 44 HOH HOH . D 4 HOH A 150 750 241 HOH HOH . D 4 HOH A 151 751 238 HOH HOH . D 4 HOH A 152 752 159 HOH HOH . D 4 HOH A 153 753 131 HOH HOH . D 4 HOH A 154 754 227 HOH HOH . D 4 HOH A 155 755 108 HOH HOH . E 4 HOH B 1 101 256 HOH HOH . E 4 HOH B 2 102 47 HOH HOH . E 4 HOH B 3 103 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 15.02 -26.813 28.891 1 55.74 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 3 16.157 -27.636 28.645 1 61.9 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 3 14.592 -26.097 27.631 1 56.05 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 3 13.57 -25.141 27.929 1 51.39 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 3 15.761 -25.428 26.945 1 49.26 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 3 16.016 -24.137 27.483 1 49.75 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #