data_6XA8 # _model_server_result.job_id R6SCnBubR5vVuZJptGIsnw _model_server_result.datetime_utc '2025-07-31 00:04:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xa8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1002}' # _entry.id 6XA8 # _exptl.entry_id 6XA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XA8 _cell.length_a 75.379 _cell.length_b 75.379 _cell.length_c 212.738 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall 'F 2 2' _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,L,O 1 1 B,C,H,I,J,K,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 6XA8 _atom_sites.fract_transf_matrix[1][1] 0.013266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 1101 1101 EDO EDO . F 4 PO4 A 1 1102 403 PO4 PO4 . G 4 PO4 A 1 1103 404 PO4 PO4 . H 3 EDO B 1 1001 1001 EDO EDO . I 3 EDO B 1 1002 1101 EDO EDO . J 4 PO4 B 1 1003 402 PO4 PO4 . K 4 PO4 C 1 401 401 PO4 PO4 . L 5 HOH A 1 1201 5 HOH HOH . L 5 HOH A 2 1202 3 HOH HOH . L 5 HOH A 3 1203 10 HOH HOH . L 5 HOH A 4 1204 8 HOH HOH . L 5 HOH A 5 1205 4 HOH HOH . M 5 HOH B 1 1101 6 HOH HOH . M 5 HOH B 2 1102 9 HOH HOH . M 5 HOH B 3 1103 1 HOH HOH . M 5 HOH B 4 1104 11 HOH HOH . N 5 HOH C 1 501 7 HOH HOH . O 5 HOH D 1 401 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 11.499 -0.307 24.108 1 76.45 ? C1 EDO 1002 B 1 HETATM 2 O O1 EDO . . . I 3 12.312 -0.632 25.233 1 72.65 ? O1 EDO 1002 B 1 HETATM 3 C C2 EDO . . . I 3 10.357 0.609 24.547 1 69.22 ? C2 EDO 1002 B 1 HETATM 4 O O2 EDO . . . I 3 10.197 1.637 23.571 1 71.03 ? O2 EDO 1002 B 1 HETATM 5 H H11 EDO . . . I 3 11.093 -1.22 23.669 1 92.34 ? H11 EDO 1002 B 1 HETATM 6 H H12 EDO . . . I 3 12.102 0.192 23.347 1 92.34 ? H12 EDO 1002 B 1 HETATM 7 H HO1 EDO . . . I 3 13.079 -1.143 24.94 1 87.79 ? HO1 EDO 1002 B 1 HETATM 8 H H21 EDO . . . I 3 10.581 1.048 25.521 1 83.67 ? H21 EDO 1002 B 1 HETATM 9 H H22 EDO . . . I 3 9.432 0.036 24.642 1 83.67 ? H22 EDO 1002 B 1 HETATM 10 H HO2 EDO . . . I 3 9.608 2.321 23.918 1 85.85 ? HO2 EDO 1002 B 1 # _model_server_stats.io_time_ms 137 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 492 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #