data_6XB1 # _model_server_result.job_id I2Ug898QHnGpCKRo_IlDhA _model_server_result.datetime_utc '2024-11-21 11:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6XB1 # _exptl.entry_id 6XB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.141 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHYL-PYRROLIDINE-2,5-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.338 _cell.angle_gamma 90 _cell.entry_id 6XB1 _cell.length_a 44.83 _cell.length_b 53.89 _cell.length_c 113.588 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 144 A SER 144 1_555 A N 2CO 145 A 2CO 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C 2CO 145 A 2CO 145 1_555 A N GLY 146 A GLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A SG CYS 156 A CYS 156 1_555 B C1 NEN . A NEN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? # _chem_comp.formula 'C6 H9 N O2' _chem_comp.formula_weight 127.141 _chem_comp.id NEN _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHYL-PYRROLIDINE-2,5-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 NEN doub 252 n n N1 C2 NEN sing 253 n n N1 C3 NEN sing 254 n n N1 C5 NEN sing 255 n n C1 C2 NEN sing 256 n n C1 C4 NEN sing 257 n n C1 H11 NEN sing 258 n n C1 H12 NEN sing 259 n n O2 C3 NEN doub 260 n n C3 C4 NEN sing 261 n n C4 H41 NEN sing 262 n n C4 H42 NEN sing 263 n n C5 C6 NEN sing 264 n n C5 H51 NEN sing 265 n n C5 H52 NEN sing 266 n n C6 H61 NEN sing 267 n n C6 H62 NEN sing 268 n n C6 H63 NEN sing 269 n n # _atom_sites.entry_id 6XB1 _atom_sites.fract_transf_matrix[1][1] 0.022306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004069 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NEN A 1 401 401 NEN CNM . C 3 HOH A 1 501 22 HOH HOH . C 3 HOH A 2 502 48 HOH HOH . C 3 HOH A 3 503 31 HOH HOH . C 3 HOH A 4 504 10 HOH HOH . C 3 HOH A 5 505 37 HOH HOH . C 3 HOH A 6 506 35 HOH HOH . C 3 HOH A 7 507 23 HOH HOH . C 3 HOH A 8 508 108 HOH HOH . C 3 HOH A 9 509 107 HOH HOH . C 3 HOH A 10 510 119 HOH HOH . C 3 HOH A 11 511 17 HOH HOH . C 3 HOH A 12 512 18 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 44 HOH HOH . C 3 HOH A 15 515 57 HOH HOH . C 3 HOH A 16 516 3 HOH HOH . C 3 HOH A 17 517 15 HOH HOH . C 3 HOH A 18 518 115 HOH HOH . C 3 HOH A 19 519 82 HOH HOH . C 3 HOH A 20 520 45 HOH HOH . C 3 HOH A 21 521 2 HOH HOH . C 3 HOH A 22 522 62 HOH HOH . C 3 HOH A 23 523 67 HOH HOH . C 3 HOH A 24 524 9 HOH HOH . C 3 HOH A 25 525 4 HOH HOH . C 3 HOH A 26 526 76 HOH HOH . C 3 HOH A 27 527 51 HOH HOH . C 3 HOH A 28 528 85 HOH HOH . C 3 HOH A 29 529 64 HOH HOH . C 3 HOH A 30 530 56 HOH HOH . C 3 HOH A 31 531 49 HOH HOH . C 3 HOH A 32 532 86 HOH HOH . C 3 HOH A 33 533 70 HOH HOH . C 3 HOH A 34 534 117 HOH HOH . C 3 HOH A 35 535 72 HOH HOH . C 3 HOH A 36 536 113 HOH HOH . C 3 HOH A 37 537 52 HOH HOH . C 3 HOH A 38 538 8 HOH HOH . C 3 HOH A 39 539 81 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 77 HOH HOH . C 3 HOH A 42 542 89 HOH HOH . C 3 HOH A 43 543 79 HOH HOH . C 3 HOH A 44 544 16 HOH HOH . C 3 HOH A 45 545 122 HOH HOH . C 3 HOH A 46 546 91 HOH HOH . C 3 HOH A 47 547 58 HOH HOH . C 3 HOH A 48 548 36 HOH HOH . C 3 HOH A 49 549 88 HOH HOH . C 3 HOH A 50 550 80 HOH HOH . C 3 HOH A 51 551 1 HOH HOH . C 3 HOH A 52 552 12 HOH HOH . C 3 HOH A 53 553 112 HOH HOH . C 3 HOH A 54 554 29 HOH HOH . C 3 HOH A 55 555 54 HOH HOH . C 3 HOH A 56 556 7 HOH HOH . C 3 HOH A 57 557 111 HOH HOH . C 3 HOH A 58 558 33 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 32 HOH HOH . C 3 HOH A 61 561 11 HOH HOH . C 3 HOH A 62 562 73 HOH HOH . C 3 HOH A 63 563 55 HOH HOH . C 3 HOH A 64 564 66 HOH HOH . C 3 HOH A 65 565 68 HOH HOH . C 3 HOH A 66 566 127 HOH HOH . C 3 HOH A 67 567 19 HOH HOH . C 3 HOH A 68 568 94 HOH HOH . C 3 HOH A 69 569 71 HOH HOH . C 3 HOH A 70 570 105 HOH HOH . C 3 HOH A 71 571 5 HOH HOH . C 3 HOH A 72 572 43 HOH HOH . C 3 HOH A 73 573 98 HOH HOH . C 3 HOH A 74 574 39 HOH HOH . C 3 HOH A 75 575 118 HOH HOH . C 3 HOH A 76 576 47 HOH HOH . C 3 HOH A 77 577 100 HOH HOH . C 3 HOH A 78 578 75 HOH HOH . C 3 HOH A 79 579 42 HOH HOH . C 3 HOH A 80 580 65 HOH HOH . C 3 HOH A 81 581 74 HOH HOH . C 3 HOH A 82 582 28 HOH HOH . C 3 HOH A 83 583 59 HOH HOH . C 3 HOH A 84 584 25 HOH HOH . C 3 HOH A 85 585 101 HOH HOH . C 3 HOH A 86 586 38 HOH HOH . C 3 HOH A 87 587 126 HOH HOH . C 3 HOH A 88 588 26 HOH HOH . C 3 HOH A 89 589 53 HOH HOH . C 3 HOH A 90 590 21 HOH HOH . C 3 HOH A 91 591 116 HOH HOH . C 3 HOH A 92 592 61 HOH HOH . C 3 HOH A 93 593 46 HOH HOH . C 3 HOH A 94 594 129 HOH HOH . C 3 HOH A 95 595 124 HOH HOH . C 3 HOH A 96 596 50 HOH HOH . C 3 HOH A 97 597 106 HOH HOH . C 3 HOH A 98 598 92 HOH HOH . C 3 HOH A 99 599 27 HOH HOH . C 3 HOH A 100 600 24 HOH HOH . C 3 HOH A 101 601 6 HOH HOH . C 3 HOH A 102 602 14 HOH HOH . C 3 HOH A 103 603 78 HOH HOH . C 3 HOH A 104 604 90 HOH HOH . C 3 HOH A 105 605 121 HOH HOH . C 3 HOH A 106 606 30 HOH HOH . C 3 HOH A 107 607 87 HOH HOH . C 3 HOH A 108 608 110 HOH HOH . C 3 HOH A 109 609 69 HOH HOH . C 3 HOH A 110 610 96 HOH HOH . C 3 HOH A 111 611 114 HOH HOH . C 3 HOH A 112 612 41 HOH HOH . C 3 HOH A 113 613 20 HOH HOH . C 3 HOH A 114 614 123 HOH HOH . C 3 HOH A 115 615 128 HOH HOH . C 3 HOH A 116 616 63 HOH HOH . C 3 HOH A 117 617 97 HOH HOH . C 3 HOH A 118 618 95 HOH HOH . C 3 HOH A 119 619 83 HOH HOH . C 3 HOH A 120 620 104 HOH HOH . C 3 HOH A 121 621 34 HOH HOH . C 3 HOH A 122 622 102 HOH HOH . C 3 HOH A 123 623 103 HOH HOH . C 3 HOH A 124 624 99 HOH HOH . C 3 HOH A 125 625 109 HOH HOH . C 3 HOH A 126 626 93 HOH HOH . C 3 HOH A 127 627 120 HOH HOH . C 3 HOH A 128 628 84 HOH HOH . C 3 HOH A 129 629 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 NEN . . . B 2 10.29 -13.232 16.386 0.8 67.92 ? O1 NEN 401 A 1 HETATM 2 N N1 NEN . . . B 2 8.971 -14.913 17.424 0.8 66.17 ? N1 NEN 401 A 1 HETATM 3 C C1 NEN . . . B 2 8.77 -14.655 15.087 0.8 58.97 ? C1 NEN 401 A 1 HETATM 4 O O2 NEN . . . B 2 7.216 -16.342 17.691 0.8 51.88 ? O2 NEN 401 A 1 HETATM 5 C C2 NEN . . . B 2 9.467 -14.142 16.356 0.8 64.93 ? C2 NEN 401 A 1 HETATM 6 C C3 NEN . . . B 2 8.051 -15.839 16.96 0.8 52.84 ? C3 NEN 401 A 1 HETATM 7 C C4 NEN . . . B 2 8.262 -16.045 15.48 0.8 55.75 ? C4 NEN 401 A 1 HETATM 8 C C5 NEN . . . B 2 9.248 -14.925 18.886 0.8 66.67 ? C5 NEN 401 A 1 HETATM 9 C C6 NEN . . . B 2 9.996 -13.789 19.584 0.8 67.66 ? C6 NEN 401 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #