data_6XBC
#
_model_server_result.job_id            Ea9hEGVeih-8sD4qeNNM7A 
_model_server_result.datetime_utc      '2024-10-20 19:07:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":501}' 
#
_entry.id    6XBC 
#
_exptl.entry_id    6XBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.58 
_cell.angle_gamma         90 
_cell.entry_id            6XBC 
_cell.length_a            83.046 
_cell.length_b            151.174 
_cell.length_c            141.401 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L 1 1 
E,F,G,H,M,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6XBC 
_atom_sites.fract_transf_matrix[1][1]    0.012042 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000333 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006615 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FAD A 1 501 501 FAD FAD . 
J 2 FAD B 1 501 501 FAD FAD . 
K 2 FAD C 1 501 501 FAD FAD . 
L 2 FAD D 1 501 501 FAD FAD . 
M 2 FAD E 1 501 501 FAD FAD . 
N 2 FAD F 1 501 501 FAD FAD . 
O 2 FAD G 1 501 501 FAD FAD . 
P 2 FAD H 1 501 501 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . M 2 35.102 -34.728 101.97 1 41.23 ? PA FAD 501 E 1 
HETATM 2 O O1A FAD . . . M 2 33.626 -34.698 102.11 1 41.43 ? O1A FAD 501 E 1 
HETATM 3 O O2A FAD . . . M 2 35.667 -35.993 101.312 1 34.1 ? O2A FAD 501 E 1 
HETATM 4 O O5B FAD . . . M 2 35.605 -33.466 101.174 1 38.53 ? O5B FAD 501 E 1 
HETATM 5 C C5B FAD . . . M 2 36.543 -33.594 100.085 1 43.15 ? C5B FAD 501 E 1 
HETATM 6 C C4B FAD . . . M 2 36.066 -32.789 98.904 1 48.27 ? C4B FAD 501 E 1 
HETATM 7 O O4B FAD . . . M 2 37.185 -32.08 98.317 1 55.55 ? O4B FAD 501 E 1 
HETATM 8 C C3B FAD . . . M 2 35.43 -33.609 97.779 1 45.41 ? C3B FAD 501 E 1 
HETATM 9 O O3B FAD . . . M 2 34.244 -32.986 97.299 1 41.33 ? O3B FAD 501 E 1 
HETATM 10 C C2B FAD . . . M 2 36.531 -33.655 96.714 1 47.53 ? C2B FAD 501 E 1 
HETATM 11 O O2B FAD . . . M 2 36.001 -33.735 95.397 1 44.31 ? O2B FAD 501 E 1 
HETATM 12 C C1B FAD . . . M 2 37.191 -32.297 96.923 1 47.21 ? C1B FAD 501 E 1 
HETATM 13 N N9A FAD . . . M 2 38.562 -32.202 96.428 1 45.82 ? N9A FAD 501 E 1 
HETATM 14 C C8A FAD . . . M 2 39.572 -33.114 96.587 1 51.44 ? C8A FAD 501 E 1 
HETATM 15 N N7A FAD . . . M 2 40.703 -32.765 96.021 1 56.82 ? N7A FAD 501 E 1 
HETATM 16 C C5A FAD . . . M 2 40.415 -31.537 95.442 1 55.07 ? C5A FAD 501 E 1 
HETATM 17 C C6A FAD . . . M 2 41.191 -30.635 94.689 1 52.56 ? C6A FAD 501 E 1 
HETATM 18 N N6A FAD . . . M 2 42.474 -30.839 94.375 1 52.32 ? N6A FAD 501 E 1 
HETATM 19 N N1A FAD . . . M 2 40.595 -29.498 94.262 1 48.76 ? N1A FAD 501 E 1 
HETATM 20 C C2A FAD . . . M 2 39.314 -29.287 94.573 1 46.59 ? C2A FAD 501 E 1 
HETATM 21 N N3A FAD . . . M 2 38.483 -30.064 95.272 1 51.11 ? N3A FAD 501 E 1 
HETATM 22 C C4A FAD . . . M 2 39.098 -31.18 95.682 1 51.88 ? C4A FAD 501 E 1 
HETATM 23 N N1 FAD . . . M 2 31.305 -37.873 110.553 1 29.78 ? N1 FAD 501 E 1 
HETATM 24 C C2 FAD . . . M 2 30.398 -37.408 111.461 1 29.3 ? C2 FAD 501 E 1 
HETATM 25 O O2 FAD . . . M 2 30.709 -36.581 112.325 1 38.95 ? O2 FAD 501 E 1 
HETATM 26 N N3 FAD . . . M 2 29.094 -37.864 111.424 1 24.69 ? N3 FAD 501 E 1 
HETATM 27 C C4 FAD . . . M 2 28.581 -38.78 110.533 1 30.39 ? C4 FAD 501 E 1 
HETATM 28 O O4 FAD . . . M 2 27.398 -39.113 110.603 1 35.53 ? O4 FAD 501 E 1 
HETATM 29 C C4X FAD . . . M 2 29.549 -39.266 109.568 1 31.34 ? C4X FAD 501 E 1 
HETATM 30 N N5 FAD . . . M 2 29.148 -40.135 108.688 1 32.47 ? N5 FAD 501 E 1 
HETATM 31 C C5X FAD . . . M 2 30.071 -40.603 107.766 1 32.02 ? C5X FAD 501 E 1 
HETATM 32 C C6 FAD . . . M 2 29.652 -41.536 106.817 1 31.5 ? C6 FAD 501 E 1 
HETATM 33 C C7 FAD . . . M 2 30.537 -42.039 105.869 1 29.79 ? C7 FAD 501 E 1 
HETATM 34 C C7M FAD . . . M 2 30.049 -43.046 104.86 1 26.77 ? C7M FAD 501 E 1 
HETATM 35 C C8 FAD . . . M 2 31.871 -41.6 105.865 1 30.28 ? C8 FAD 501 E 1 
HETATM 36 C C8M FAD . . . M 2 32.856 -42.123 104.854 1 27.72 ? C8M FAD 501 E 1 
HETATM 37 C C9 FAD . . . M 2 32.292 -40.673 106.813 1 31.02 ? C9 FAD 501 E 1 
HETATM 38 C C9A FAD . . . M 2 31.406 -40.171 107.759 1 26.85 ? C9A FAD 501 E 1 
HETATM 39 N N10 FAD . . . M 2 31.796 -39.212 108.719 1 26.27 ? N10 FAD 501 E 1 
HETATM 40 C C10 FAD . . . M 2 30.891 -38.751 109.655 1 33.22 ? C10 FAD 501 E 1 
HETATM 41 C C1' FAD . . . M 2 33.19 -38.728 108.777 1 27.27 ? C1' FAD 501 E 1 
HETATM 42 C C2' FAD . . . M 2 33.4 -37.345 108.154 1 34.8 ? C2' FAD 501 E 1 
HETATM 43 O O2' FAD . . . M 2 32.636 -36.341 108.823 1 21.62 ? O2' FAD 501 E 1 
HETATM 44 C C3' FAD . . . M 2 33.023 -37.38 106.671 1 34.57 ? C3' FAD 501 E 1 
HETATM 45 O O3' FAD . . . M 2 33.915 -38.251 105.984 1 29.12 ? O3' FAD 501 E 1 
HETATM 46 C C4' FAD . . . M 2 33.048 -36.014 105.979 1 28.61 ? C4' FAD 501 E 1 
HETATM 47 O O4' FAD . . . M 2 32.407 -36.132 104.707 1 31.96 ? O4' FAD 501 E 1 
HETATM 48 C C5' FAD . . . M 2 34.448 -35.458 105.815 1 33.4 ? C5' FAD 501 E 1 
HETATM 49 O O5' FAD . . . M 2 34.365 -34.087 105.368 1 39.26 ? O5' FAD 501 E 1 
HETATM 50 P P FAD . . . M 2 35.497 -33.444 104.474 1 37.67 ? P FAD 501 E 1 
HETATM 51 O O1P FAD . . . M 2 34.964 -32.205 103.748 1 25.26 ? O1P FAD 501 E 1 
HETATM 52 O O2P FAD . . . M 2 36.725 -33.179 105.272 1 44.15 ? O2P FAD 501 E 1 
HETATM 53 O O3P FAD . . . M 2 35.786 -34.581 103.394 1 46.57 ? O3P FAD 501 E 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#