data_6XBC
#
_model_server_result.job_id            82-d7PVtzYvTChAIxxwSZg 
_model_server_result.datetime_utc      '2024-10-20 19:09:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":501}' 
#
_entry.id    6XBC 
#
_exptl.entry_id    6XBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.58 
_cell.angle_gamma         90 
_cell.entry_id            6XBC 
_cell.length_a            83.046 
_cell.length_b            151.174 
_cell.length_c            141.401 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L 1 1 
E,F,G,H,M,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6XBC 
_atom_sites.fract_transf_matrix[1][1]    0.012042 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000333 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006615 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FAD A 1 501 501 FAD FAD . 
J 2 FAD B 1 501 501 FAD FAD . 
K 2 FAD C 1 501 501 FAD FAD . 
L 2 FAD D 1 501 501 FAD FAD . 
M 2 FAD E 1 501 501 FAD FAD . 
N 2 FAD F 1 501 501 FAD FAD . 
O 2 FAD G 1 501 501 FAD FAD . 
P 2 FAD H 1 501 501 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . N 2 -6.482 -72.227 117.134 1 52.67 ? PA FAD 501 F 1 
HETATM 2 O O1A FAD . . . N 2 -5.072 -71.831 117.37 1 44.11 ? O1A FAD 501 F 1 
HETATM 3 O O2A FAD . . . N 2 -7.079 -71.658 115.842 1 57.13 ? O2A FAD 501 F 1 
HETATM 4 O O5B FAD . . . N 2 -6.667 -73.798 117.145 1 42.68 ? O5B FAD 501 F 1 
HETATM 5 C C5B FAD . . . N 2 -7.803 -74.423 116.51 1 53.29 ? C5B FAD 501 F 1 
HETATM 6 C C4B FAD . . . N 2 -7.436 -75.831 116.113 1 55.1 ? C4B FAD 501 F 1 
HETATM 7 O O4B FAD . . . N 2 -8.599 -76.689 116.195 1 53.91 ? O4B FAD 501 F 1 
HETATM 8 C C3B FAD . . . N 2 -6.874 -75.982 114.697 1 59.3 ? C3B FAD 501 F 1 
HETATM 9 O O3B FAD . . . N 2 -5.657 -76.718 114.726 1 54.75 ? O3B FAD 501 F 1 
HETATM 10 C C2B FAD . . . N 2 -7.991 -76.719 113.945 1 73.62 ? C2B FAD 501 F 1 
HETATM 11 O O2B FAD . . . N 2 -7.496 -77.571 112.917 1 57.68 ? O2B FAD 501 F 1 
HETATM 12 C C1B FAD . . . N 2 -8.607 -77.54 115.072 1 72.4 ? C1B FAD 501 F 1 
HETATM 13 N N9A FAD . . . N 2 -9.975 -77.991 114.821 1 67.19 ? N9A FAD 501 F 1 
HETATM 14 C C8A FAD . . . N 2 -11.038 -77.239 114.396 1 56.53 ? C8A FAD 501 F 1 
HETATM 15 N N7A FAD . . . N 2 -12.15 -77.918 114.247 1 60.29 ? N7A FAD 501 F 1 
HETATM 16 C C5A FAD . . . N 2 -11.792 -79.212 114.596 1 69.21 ? C5A FAD 501 F 1 
HETATM 17 C C6A FAD . . . N 2 -12.52 -80.418 114.651 1 72.96 ? C6A FAD 501 F 1 
HETATM 18 N N6A FAD . . . N 2 -13.816 -80.52 114.341 1 70.87 ? N6A FAD 501 F 1 
HETATM 19 N N1A FAD . . . N 2 -11.86 -81.533 115.04 1 68.48 ? N1A FAD 501 F 1 
HETATM 20 C C2A FAD . . . N 2 -10.565 -81.438 115.353 1 58.87 ? C2A FAD 501 F 1 
HETATM 21 N N3A FAD . . . N 2 -9.776 -80.36 115.336 1 54.65 ? N3A FAD 501 F 1 
HETATM 22 C C4A FAD . . . N 2 -10.454 -79.273 114.948 1 67.21 ? C4A FAD 501 F 1 
HETATM 23 N N1 FAD . . . N 2 -3.066 -64.06 121.089 1 54.13 ? N1 FAD 501 F 1 
HETATM 24 C C2 FAD . . . N 2 -2.169 -63.761 122.075 1 41.93 ? C2 FAD 501 F 1 
HETATM 25 O O2 FAD . . . N 2 -2.49 -63.759 123.269 1 44.11 ? O2 FAD 501 F 1 
HETATM 26 N N3 FAD . . . N 2 -0.865 -63.444 121.742 1 38.61 ? N3 FAD 501 F 1 
HETATM 27 C C4 FAD . . . N 2 -0.34 -63.398 120.466 1 51.25 ? C4 FAD 501 F 1 
HETATM 28 O O4 FAD . . . N 2 0.841 -63.1 120.294 1 54.17 ? O4 FAD 501 F 1 
HETATM 29 C C4X FAD . . . N 2 -1.296 -63.724 119.424 1 58.72 ? C4X FAD 501 F 1 
HETATM 30 N N5 FAD . . . N 2 -0.883 -63.704 118.187 1 56.12 ? N5 FAD 501 F 1 
HETATM 31 C C5X FAD . . . N 2 -1.794 -64.014 117.19 1 58.95 ? C5X FAD 501 F 1 
HETATM 32 C C6 FAD . . . N 2 -1.363 -63.998 115.863 1 56.89 ? C6 FAD 501 F 1 
HETATM 33 C C7 FAD . . . N 2 -2.235 -64.301 114.823 1 52.84 ? C7 FAD 501 F 1 
HETATM 34 C C7M FAD . . . N 2 -1.735 -64.271 113.403 1 55.86 ? C7M FAD 501 F 1 
HETATM 35 C C8 FAD . . . N 2 -3.569 -64.63 115.112 1 58.44 ? C8 FAD 501 F 1 
HETATM 36 C C8M FAD . . . N 2 -4.536 -64.965 114.01 1 52.25 ? C8M FAD 501 F 1 
HETATM 37 C C9 FAD . . . N 2 -4.003 -64.644 116.435 1 58.05 ? C9 FAD 501 F 1 
HETATM 38 C C9A FAD . . . N 2 -3.129 -64.342 117.473 1 55.98 ? C9A FAD 501 F 1 
HETATM 39 N N10 FAD . . . N 2 -3.533 -64.369 118.826 1 56.38 ? N10 FAD 501 F 1 
HETATM 40 C C10 FAD . . . N 2 -2.639 -64.046 119.831 1 62.62 ? C10 FAD 501 F 1 
HETATM 41 C C1' FAD . . . N 2 -4.926 -64.693 119.189 1 52.82 ? C1' FAD 501 F 1 
HETATM 42 C C2' FAD . . . N 2 -5.122 -66.125 119.693 1 51 ? C2' FAD 501 F 1 
HETATM 43 O O2' FAD . . . N 2 -4.297 -66.406 120.824 1 58.2 ? O2' FAD 501 F 1 
HETATM 44 C C3' FAD . . . N 2 -4.801 -67.12 118.576 1 53.95 ? C3' FAD 501 F 1 
HETATM 45 O O3' FAD . . . N 2 -5.823 -67.047 117.589 1 68.83 ? O3' FAD 501 F 1 
HETATM 46 C C4' FAD . . . N 2 -4.681 -68.566 119.062 1 45.78 ? C4' FAD 501 F 1 
HETATM 47 O O4' FAD . . . N 2 -3.973 -69.352 118.102 1 38.99 ? O4' FAD 501 F 1 
HETATM 48 C C5' FAD . . . N 2 -6.025 -69.192 119.366 1 52.38 ? C5' FAD 501 F 1 
HETATM 49 O O5' FAD . . . N 2 -5.819 -70.541 119.835 1 60.46 ? O5' FAD 501 F 1 
HETATM 50 P P FAD . . . N 2 -7 -71.583 119.871 1 46.35 ? P FAD 501 F 1 
HETATM 51 O O1P FAD . . . N 2 -6.491 -72.935 120.381 1 38.15 ? O1P FAD 501 F 1 
HETATM 52 O O2P FAD . . . N 2 -8.149 -71.03 120.636 1 45.84 ? O2P FAD 501 F 1 
HETATM 53 O O3P FAD . . . N 2 -7.396 -71.734 118.334 1 65.02 ? O3P FAD 501 F 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#