data_6XBD
#
_model_server_result.job_id            DV42RQxJjNSnaXM-TFgKQg 
_model_server_result.datetime_utc      '2025-01-09 18:06:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xbd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":302}' 
#
_entry.id    6XBD 
#
_exptl.entry_id    6XBD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              691.959 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XBD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XBD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 O N N 
? 6 P N N 
#
_chem_comp.formula           'C37 H74 N O8 P' 
_chem_comp.formula_weight    691.959 
_chem_comp.id                PEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 PEF sing 235 n n 
C2 C3 PEF sing 236 n n 
C2 O2 PEF sing 237 n n 
C2 H21 PEF sing 238 n n 
C1 O3P PEF sing 239 n n 
C1 H11 PEF sing 240 n n 
C1 H12 PEF sing 241 n n 
N C5 PEF sing 242 n n 
N HN1 PEF sing 243 n n 
N HN2 PEF sing 244 n n 
C3 O3 PEF sing 245 n n 
C3 H31 PEF sing 246 n n 
C3 H32 PEF sing 247 n n 
C4 C5 PEF sing 248 n n 
C4 O4P PEF sing 249 n n 
C4 H41 PEF sing 250 n n 
C4 H42 PEF sing 251 n n 
C5 H51 PEF sing 252 n n 
C5 H52 PEF sing 253 n n 
C10 C11 PEF sing 254 n n 
C10 O4 PEF doub 255 n n 
C10 O2 PEF sing 256 n n 
C11 C12 PEF sing 257 n n 
C11 H112 PEF sing 258 n n 
C11 H111 PEF sing 259 n n 
C12 C13 PEF sing 260 n n 
C12 H122 PEF sing 261 n n 
C12 H121 PEF sing 262 n n 
C13 C14 PEF sing 263 n n 
C13 H132 PEF sing 264 n n 
C13 H131 PEF sing 265 n n 
C14 C15 PEF sing 266 n n 
C14 H142 PEF sing 267 n n 
C14 H141 PEF sing 268 n n 
C15 C16 PEF sing 269 n n 
C15 H152 PEF sing 270 n n 
C15 H151 PEF sing 271 n n 
C16 C17 PEF sing 272 n n 
C16 H162 PEF sing 273 n n 
C16 H161 PEF sing 274 n n 
C17 C18 PEF sing 275 n n 
C17 H172 PEF sing 276 n n 
C17 H171 PEF sing 277 n n 
C18 C19 PEF sing 278 n n 
C18 H182 PEF sing 279 n n 
C18 H181 PEF sing 280 n n 
C19 C20 PEF sing 281 n n 
C19 H192 PEF sing 282 n n 
C19 H191 PEF sing 283 n n 
C20 C21 PEF sing 284 n n 
C20 H202 PEF sing 285 n n 
C20 H201 PEF sing 286 n n 
C21 C22 PEF sing 287 n n 
C21 H212 PEF sing 288 n n 
C21 H211 PEF sing 289 n n 
C22 C23 PEF sing 290 n n 
C22 H222 PEF sing 291 n n 
C22 H221 PEF sing 292 n n 
C23 C24 PEF sing 293 n n 
C23 H232 PEF sing 294 n n 
C23 H231 PEF sing 295 n n 
C24 C25 PEF sing 296 n n 
C24 H242 PEF sing 297 n n 
C24 H241 PEF sing 298 n n 
C25 H252 PEF sing 299 n n 
C25 H251 PEF sing 300 n n 
C25 H253 PEF sing 301 n n 
C30 C31 PEF sing 302 n n 
C30 O5 PEF doub 303 n n 
C30 O3 PEF sing 304 n n 
C31 C32 PEF sing 305 n n 
C31 H312 PEF sing 306 n n 
C31 H311 PEF sing 307 n n 
C32 C33 PEF sing 308 n n 
C32 H322 PEF sing 309 n n 
C32 H321 PEF sing 310 n n 
C33 C34 PEF sing 311 n n 
C33 H332 PEF sing 312 n n 
C33 H331 PEF sing 313 n n 
C34 C35 PEF sing 314 n n 
C34 H342 PEF sing 315 n n 
C34 H341 PEF sing 316 n n 
C35 C36 PEF sing 317 n n 
C35 H352 PEF sing 318 n n 
C35 H351 PEF sing 319 n n 
C36 C37 PEF sing 320 n n 
C36 H362 PEF sing 321 n n 
C36 H361 PEF sing 322 n n 
C37 C38 PEF sing 323 n n 
C37 H372 PEF sing 324 n n 
C37 H371 PEF sing 325 n n 
C38 C39 PEF sing 326 n n 
C38 H382 PEF sing 327 n n 
C38 H381 PEF sing 328 n n 
C39 C40 PEF sing 329 n n 
C39 H392 PEF sing 330 n n 
C39 H391 PEF sing 331 n n 
C40 C41 PEF sing 332 n n 
C40 H402 PEF sing 333 n n 
C40 H401 PEF sing 334 n n 
C41 C42 PEF sing 335 n n 
C41 H412 PEF sing 336 n n 
C41 H411 PEF sing 337 n n 
C42 C43 PEF sing 338 n n 
C42 H422 PEF sing 339 n n 
C42 H421 PEF sing 340 n n 
C43 C44 PEF sing 341 n n 
C43 H432 PEF sing 342 n n 
C43 H431 PEF sing 343 n n 
C44 C45 PEF sing 344 n n 
C44 H442 PEF sing 345 n n 
C44 H441 PEF sing 346 n n 
C45 H452 PEF sing 347 n n 
C45 H451 PEF sing 348 n n 
C45 H453 PEF sing 349 n n 
O1P P PEF doub 350 n n 
O2P P PEF sing 351 n n 
O2P HOP2 PEF sing 352 n n 
O3P P PEF sing 353 n n 
O4P P PEF sing 354 n n 
#
_atom_sites.entry_id                     6XBD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 6 PEF G 1 301 301 PEF PEF . 
P 6 PEF G 1 302 401 PEF PEF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 PEF . . . P 6 131.255 126.318 152.647 1 77.1 ? C2 PEF 302 G 1 
HETATM 2 C C1 PEF . . . P 6 132.088 125.057 152.788 1 77.1 ? C1 PEF 302 G 1 
HETATM 3 C C3 PEF . . . P 6 130.73 126.418 151.217 1 77.1 ? C3 PEF 302 G 1 
HETATM 4 C C10 PEF . . . P 6 129.599 127.534 153.904 1 77.1 ? C10 PEF 302 G 1 
HETATM 5 C C11 PEF . . . P 6 128.312 127.598 154.784 1 77.1 ? C11 PEF 302 G 1 
HETATM 6 C C12 PEF . . . P 6 128.614 128.014 156.255 1 77.1 ? C12 PEF 302 G 1 
HETATM 7 C C13 PEF . . . P 6 127.584 127.428 157.253 1 77.1 ? C13 PEF 302 G 1 
HETATM 8 C C14 PEF . . . P 6 126.152 127.455 156.694 1 77.1 ? C14 PEF 302 G 1 
HETATM 9 C C15 PEF . . . P 6 125.552 126.046 156.537 1 77.1 ? C15 PEF 302 G 1 
HETATM 10 C C16 PEF . . . P 6 124.548 125.966 155.372 1 77.1 ? C16 PEF 302 G 1 
HETATM 11 C C17 PEF . . . P 6 124.523 124.564 154.713 1 77.1 ? C17 PEF 302 G 1 
HETATM 12 C C18 PEF . . . P 6 124.187 124.636 153.209 1 77.1 ? C18 PEF 302 G 1 
HETATM 13 C C19 PEF . . . P 6 125.439 124.89 152.347 1 77.1 ? C19 PEF 302 G 1 
HETATM 14 C C20 PEF . . . P 6 125.192 124.59 150.857 1 77.1 ? C20 PEF 302 G 1 
HETATM 15 C C21 PEF . . . P 6 124.267 125.631 150.205 1 77.1 ? C21 PEF 302 G 1 
HETATM 16 C C22 PEF . . . P 6 123.807 125.208 148.791 1 77.1 ? C22 PEF 302 G 1 
HETATM 17 C C23 PEF . . . P 6 124.987 125.007 147.824 1 77.1 ? C23 PEF 302 G 1 
HETATM 18 C C24 PEF . . . P 6 125.12 123.553 147.361 1 77.1 ? C24 PEF 302 G 1 
HETATM 19 C C25 PEF . . . P 6 124.561 123.341 145.956 1 77.1 ? C25 PEF 302 G 1 
HETATM 20 C C30 PEF . . . P 6 131.053 125.028 149.328 1 77.1 ? C30 PEF 302 G 1 
HETATM 21 C C31 PEF . . . P 6 129.565 125.198 149.013 1 77.1 ? C31 PEF 302 G 1 
HETATM 22 C C32 PEF . . . P 6 129.26 125.119 147.513 1 77.1 ? C32 PEF 302 G 1 
HETATM 23 C C33 PEF . . . P 6 129.045 123.673 147.055 1 77.1 ? C33 PEF 302 G 1 
HETATM 24 C C34 PEF . . . P 6 130.069 123.246 145.997 1 77.1 ? C34 PEF 302 G 1 
HETATM 25 C C35 PEF . . . P 6 129.633 123.685 144.594 1 77.1 ? C35 PEF 302 G 1 
HETATM 26 C C36 PEF . . . P 6 128.192 123.245 144.298 1 77.1 ? C36 PEF 302 G 1 
HETATM 27 C C37 PEF . . . P 6 127.352 124.367 143.651 1 77.1 ? C37 PEF 302 G 1 
HETATM 28 C C38 PEF . . . P 6 126.423 123.821 142.533 1 77.1 ? C38 PEF 302 G 1 
HETATM 29 C C39 PEF . . . P 6 127.028 122.584 141.858 1 77.1 ? C39 PEF 302 G 1 
HETATM 30 C C40 PEF . . . P 6 126.069 121.921 140.871 1 77.1 ? C40 PEF 302 G 1 
HETATM 31 C C41 PEF . . . P 6 126.793 121.379 139.663 1 77.1 ? C41 PEF 302 G 1 
HETATM 32 C C42 PEF . . . P 6 126.387 122.091 138.398 1 77.1 ? C42 PEF 302 G 1 
HETATM 33 C C43 PEF . . . P 6 126.659 121.253 137.163 1 77.1 ? C43 PEF 302 G 1 
HETATM 34 C C44 PEF . . . P 6 126.344 121.991 135.89 1 77.1 ? C44 PEF 302 G 1 
HETATM 35 C C45 PEF . . . P 6 125.096 122.87 136.012 1 77.1 ? C45 PEF 302 G 1 
HETATM 36 O O4 PEF . . . P 6 130.106 128.535 153.534 1 77.1 ? O4 PEF 302 G 1 
HETATM 37 O O5 PEF . . . P 6 131.706 124.264 148.707 1 77.1 ? O5 PEF 302 G 1 
HETATM 38 O O2 PEF . . . P 6 130.161 126.255 153.545 1 77.1 ? O2 PEF 302 G 1 
HETATM 39 O O3 PEF . . . P 6 131.649 125.78 150.357 1 77.1 ? O3 PEF 302 G 1 
HETATM 40 O O1P PEF . . . P 6 134.332 123.235 153.731 1 77.1 ? O1P PEF 302 G 1 
HETATM 41 O O2P PEF . . . P 6 134.35 123.374 151.269 1 77.1 ? O2P PEF 302 G 1 
HETATM 42 O O3P PEF . . . P 6 133.436 125.384 152.614 1 77.1 ? O3P PEF 302 G 1 
HETATM 43 O O4P PEF . . . P 6 135.934 124.723 152.593 1 77.1 ? O4P PEF 302 G 1 
HETATM 44 P P PEF . . . P 6 134.536 124.153 152.55 1 77.1 ? P PEF 302 G 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#