data_6XBH
#
_model_server_result.job_id            AATi0ZYmtdS0RsMsuhOZAQ 
_model_server_result.datetime_utc      '2024-11-08 16:14:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xbh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6XBH 
#
_exptl.entry_id    6XBH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.02 
_cell.angle_gamma         90 
_cell.entry_id            6XBH 
_cell.length_a            113.19 
_cell.length_b            54.512 
_cell.length_c            45.129 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XBH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 147 A CYS 145 1_555 B C ELL 3 C ELL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? 
covale ? covale2 B C19 P6S 1 C P6S 1 1_555 B N PHE 2 C PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 B C PHE 2 C PHE 2 1_555 B N ELL 3 C ELL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
metalc ? metalc1 A O VAL 79 A VAL 77 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc2 D NA NA . A NA 502 1_555 E O HOH . A HOH 729 1_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc3 D NA NA . A NA 502 1_555 E O HOH . A HOH 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 152 n n 
C1 C2 GOL sing 153 n n 
C1 H11 GOL sing 154 n n 
C1 H12 GOL sing 155 n n 
O1 HO1 GOL sing 156 n n 
C2 O2 GOL sing 157 n n 
C2 C3 GOL sing 158 n n 
C2 H2 GOL sing 159 n n 
O2 HO2 GOL sing 160 n n 
C3 O3 GOL sing 161 n n 
C3 H31 GOL sing 162 n n 
C3 H32 GOL sing 163 n n 
O3 HO3 GOL sing 164 n n 
#
_atom_sites.entry_id                     6XBH 
_atom_sites.fract_transf_matrix[1][1]    0.008835 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00156 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 501 501 GOL GOL . 
D 4 NA A 1 502 1 NA NA . 
E 5 HOH A 1 601 265 HOH HOH . 
E 5 HOH A 2 602 293 HOH HOH . 
E 5 HOH A 3 603 269 HOH HOH . 
E 5 HOH A 4 604 292 HOH HOH . 
E 5 HOH A 5 605 335 HOH HOH . 
E 5 HOH A 6 606 276 HOH HOH . 
E 5 HOH A 7 607 59 HOH HOH . 
E 5 HOH A 8 608 61 HOH HOH . 
E 5 HOH A 9 609 330 HOH HOH . 
E 5 HOH A 10 610 357 HOH HOH . 
E 5 HOH A 11 611 99 HOH HOH . 
E 5 HOH A 12 612 181 HOH HOH . 
E 5 HOH A 13 613 296 HOH HOH . 
E 5 HOH A 14 614 320 HOH HOH . 
E 5 HOH A 15 615 328 HOH HOH . 
E 5 HOH A 16 616 42 HOH HOH . 
E 5 HOH A 17 617 52 HOH HOH . 
E 5 HOH A 18 618 344 HOH HOH . 
E 5 HOH A 19 619 31 HOH HOH . 
E 5 HOH A 20 620 285 HOH HOH . 
E 5 HOH A 21 621 258 HOH HOH . 
E 5 HOH A 22 622 109 HOH HOH . 
E 5 HOH A 23 623 46 HOH HOH . 
E 5 HOH A 24 624 67 HOH HOH . 
E 5 HOH A 25 625 21 HOH HOH . 
E 5 HOH A 26 626 175 HOH HOH . 
E 5 HOH A 27 627 338 HOH HOH . 
E 5 HOH A 28 628 60 HOH HOH . 
E 5 HOH A 29 629 2 HOH HOH . 
E 5 HOH A 30 630 71 HOH HOH . 
E 5 HOH A 31 631 28 HOH HOH . 
E 5 HOH A 32 632 317 HOH HOH . 
E 5 HOH A 33 633 118 HOH HOH . 
E 5 HOH A 34 634 297 HOH HOH . 
E 5 HOH A 35 635 6 HOH HOH . 
E 5 HOH A 36 636 260 HOH HOH . 
E 5 HOH A 37 637 87 HOH HOH . 
E 5 HOH A 38 638 84 HOH HOH . 
E 5 HOH A 39 639 334 HOH HOH . 
E 5 HOH A 40 640 56 HOH HOH . 
E 5 HOH A 41 641 280 HOH HOH . 
E 5 HOH A 42 642 83 HOH HOH . 
E 5 HOH A 43 643 289 HOH HOH . 
E 5 HOH A 44 644 353 HOH HOH . 
E 5 HOH A 45 645 174 HOH HOH . 
E 5 HOH A 46 646 4 HOH HOH . 
E 5 HOH A 47 647 103 HOH HOH . 
E 5 HOH A 48 648 75 HOH HOH . 
E 5 HOH A 49 649 72 HOH HOH . 
E 5 HOH A 50 650 3 HOH HOH . 
E 5 HOH A 51 651 287 HOH HOH . 
E 5 HOH A 52 652 255 HOH HOH . 
E 5 HOH A 53 653 121 HOH HOH . 
E 5 HOH A 54 654 34 HOH HOH . 
E 5 HOH A 55 655 14 HOH HOH . 
E 5 HOH A 56 656 96 HOH HOH . 
E 5 HOH A 57 657 257 HOH HOH . 
E 5 HOH A 58 658 35 HOH HOH . 
E 5 HOH A 59 659 278 HOH HOH . 
E 5 HOH A 60 660 295 HOH HOH . 
E 5 HOH A 61 661 284 HOH HOH . 
E 5 HOH A 62 662 291 HOH HOH . 
E 5 HOH A 63 663 122 HOH HOH . 
E 5 HOH A 64 664 11 HOH HOH . 
E 5 HOH A 65 665 93 HOH HOH . 
E 5 HOH A 66 666 76 HOH HOH . 
E 5 HOH A 67 667 300 HOH HOH . 
E 5 HOH A 68 668 80 HOH HOH . 
E 5 HOH A 69 669 262 HOH HOH . 
E 5 HOH A 70 670 355 HOH HOH . 
E 5 HOH A 71 671 116 HOH HOH . 
E 5 HOH A 72 672 193 HOH HOH . 
E 5 HOH A 73 673 306 HOH HOH . 
E 5 HOH A 74 674 294 HOH HOH . 
E 5 HOH A 75 675 254 HOH HOH . 
E 5 HOH A 76 676 81 HOH HOH . 
E 5 HOH A 77 677 229 HOH HOH . 
E 5 HOH A 78 678 82 HOH HOH . 
E 5 HOH A 79 679 256 HOH HOH . 
E 5 HOH A 80 680 282 HOH HOH . 
E 5 HOH A 81 681 279 HOH HOH . 
E 5 HOH A 82 682 107 HOH HOH . 
E 5 HOH A 83 683 305 HOH HOH . 
E 5 HOH A 84 684 88 HOH HOH . 
E 5 HOH A 85 685 324 HOH HOH . 
E 5 HOH A 86 686 298 HOH HOH . 
E 5 HOH A 87 687 7 HOH HOH . 
E 5 HOH A 88 688 288 HOH HOH . 
E 5 HOH A 89 689 155 HOH HOH . 
E 5 HOH A 90 690 322 HOH HOH . 
E 5 HOH A 91 691 98 HOH HOH . 
E 5 HOH A 92 692 248 HOH HOH . 
E 5 HOH A 93 693 311 HOH HOH . 
E 5 HOH A 94 694 283 HOH HOH . 
E 5 HOH A 95 695 304 HOH HOH . 
E 5 HOH A 96 696 18 HOH HOH . 
E 5 HOH A 97 697 299 HOH HOH . 
E 5 HOH A 98 698 1 HOH HOH . 
E 5 HOH A 99 699 147 HOH HOH . 
E 5 HOH A 100 700 263 HOH HOH . 
E 5 HOH A 101 701 49 HOH HOH . 
E 5 HOH A 102 702 65 HOH HOH . 
E 5 HOH A 103 703 332 HOH HOH . 
E 5 HOH A 104 704 12 HOH HOH . 
E 5 HOH A 105 705 252 HOH HOH . 
E 5 HOH A 106 706 24 HOH HOH . 
E 5 HOH A 107 707 8 HOH HOH . 
E 5 HOH A 108 708 32 HOH HOH . 
E 5 HOH A 109 709 323 HOH HOH . 
E 5 HOH A 110 710 22 HOH HOH . 
E 5 HOH A 111 711 5 HOH HOH . 
E 5 HOH A 112 712 277 HOH HOH . 
E 5 HOH A 113 713 94 HOH HOH . 
E 5 HOH A 114 714 286 HOH HOH . 
E 5 HOH A 115 715 69 HOH HOH . 
E 5 HOH A 116 716 92 HOH HOH . 
E 5 HOH A 117 717 186 HOH HOH . 
E 5 HOH A 118 718 315 HOH HOH . 
E 5 HOH A 119 719 169 HOH HOH . 
E 5 HOH A 120 720 313 HOH HOH . 
E 5 HOH A 121 721 243 HOH HOH . 
E 5 HOH A 122 722 40 HOH HOH . 
E 5 HOH A 123 723 33 HOH HOH . 
E 5 HOH A 124 724 275 HOH HOH . 
E 5 HOH A 125 725 48 HOH HOH . 
E 5 HOH A 126 726 64 HOH HOH . 
E 5 HOH A 127 727 351 HOH HOH . 
E 5 HOH A 128 728 79 HOH HOH . 
E 5 HOH A 129 729 100 HOH HOH . 
E 5 HOH A 130 730 180 HOH HOH . 
E 5 HOH A 131 731 19 HOH HOH . 
E 5 HOH A 132 732 281 HOH HOH . 
E 5 HOH A 133 733 15 HOH HOH . 
E 5 HOH A 134 734 53 HOH HOH . 
E 5 HOH A 135 735 39 HOH HOH . 
E 5 HOH A 136 736 268 HOH HOH . 
E 5 HOH A 137 737 89 HOH HOH . 
E 5 HOH A 138 738 316 HOH HOH . 
E 5 HOH A 139 739 172 HOH HOH . 
E 5 HOH A 140 740 50 HOH HOH . 
E 5 HOH A 141 741 307 HOH HOH . 
E 5 HOH A 142 742 138 HOH HOH . 
E 5 HOH A 143 743 27 HOH HOH . 
E 5 HOH A 144 744 51 HOH HOH . 
E 5 HOH A 145 745 145 HOH HOH . 
E 5 HOH A 146 746 9 HOH HOH . 
E 5 HOH A 147 747 347 HOH HOH . 
E 5 HOH A 148 748 106 HOH HOH . 
E 5 HOH A 149 749 308 HOH HOH . 
E 5 HOH A 150 750 58 HOH HOH . 
E 5 HOH A 151 751 273 HOH HOH . 
E 5 HOH A 152 752 327 HOH HOH . 
E 5 HOH A 153 753 55 HOH HOH . 
E 5 HOH A 154 754 253 HOH HOH . 
E 5 HOH A 155 755 267 HOH HOH . 
E 5 HOH A 156 756 124 HOH HOH . 
E 5 HOH A 157 757 345 HOH HOH . 
E 5 HOH A 158 758 309 HOH HOH . 
E 5 HOH A 159 759 339 HOH HOH . 
E 5 HOH A 160 760 211 HOH HOH . 
E 5 HOH A 161 761 30 HOH HOH . 
E 5 HOH A 162 762 95 HOH HOH . 
E 5 HOH A 163 763 216 HOH HOH . 
E 5 HOH A 164 764 266 HOH HOH . 
E 5 HOH A 165 765 26 HOH HOH . 
E 5 HOH A 166 766 340 HOH HOH . 
E 5 HOH A 167 767 303 HOH HOH . 
E 5 HOH A 168 768 195 HOH HOH . 
E 5 HOH A 169 769 16 HOH HOH . 
E 5 HOH A 170 770 25 HOH HOH . 
E 5 HOH A 171 771 164 HOH HOH . 
E 5 HOH A 172 772 114 HOH HOH . 
E 5 HOH A 173 773 350 HOH HOH . 
E 5 HOH A 174 774 247 HOH HOH . 
E 5 HOH A 175 775 90 HOH HOH . 
E 5 HOH A 176 776 112 HOH HOH . 
E 5 HOH A 177 777 333 HOH HOH . 
E 5 HOH A 178 778 136 HOH HOH . 
E 5 HOH A 179 779 68 HOH HOH . 
E 5 HOH A 180 780 342 HOH HOH . 
E 5 HOH A 181 781 29 HOH HOH . 
E 5 HOH A 182 782 336 HOH HOH . 
E 5 HOH A 183 783 318 HOH HOH . 
E 5 HOH A 184 784 349 HOH HOH . 
E 5 HOH A 185 785 329 HOH HOH . 
E 5 HOH A 186 786 245 HOH HOH . 
E 5 HOH A 187 787 141 HOH HOH . 
E 5 HOH A 188 788 352 HOH HOH . 
E 5 HOH A 189 789 341 HOH HOH . 
E 5 HOH A 190 790 123 HOH HOH . 
E 5 HOH A 191 791 43 HOH HOH . 
E 5 HOH A 192 792 101 HOH HOH . 
E 5 HOH A 193 793 111 HOH HOH . 
E 5 HOH A 194 794 325 HOH HOH . 
E 5 HOH A 195 795 331 HOH HOH . 
E 5 HOH A 196 796 290 HOH HOH . 
E 5 HOH A 197 797 326 HOH HOH . 
E 5 HOH A 198 798 264 HOH HOH . 
E 5 HOH A 199 799 274 HOH HOH . 
E 5 HOH A 200 800 261 HOH HOH . 
E 5 HOH A 201 801 319 HOH HOH . 
E 5 HOH A 202 802 271 HOH HOH . 
E 5 HOH A 203 803 321 HOH HOH . 
E 5 HOH A 204 804 44 HOH HOH . 
E 5 HOH A 205 805 310 HOH HOH . 
E 5 HOH A 206 806 312 HOH HOH . 
E 5 HOH A 207 807 240 HOH HOH . 
E 5 HOH A 208 808 120 HOH HOH . 
E 5 HOH A 209 809 302 HOH HOH . 
E 5 HOH A 210 810 159 HOH HOH . 
E 5 HOH A 211 811 259 HOH HOH . 
E 5 HOH A 212 812 244 HOH HOH . 
E 5 HOH A 213 813 337 HOH HOH . 
E 5 HOH A 214 814 241 HOH HOH . 
E 5 HOH A 215 815 314 HOH HOH . 
E 5 HOH A 216 816 343 HOH HOH . 
E 5 HOH A 217 817 131 HOH HOH . 
E 5 HOH A 218 818 272 HOH HOH . 
E 5 HOH A 219 819 238 HOH HOH . 
E 5 HOH A 220 820 227 HOH HOH . 
F 5 HOH C 1 101 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . A . C 3 15.607 -26.972 28.119 0.5 29.51 ? C1 GOL 501 A 1 
HETATM 2 C C1 GOL . B . C 3 14.444 -26.628 26.085 0.5 40.07 ? C1 GOL 501 A 1 
HETATM 3 O O1 GOL . A . C 3 16.877 -27.285 27.565 0.5 32.37 ? O1 GOL 501 A 1 
HETATM 4 O O1 GOL . B . C 3 15.405 -27.52 25.536 0.5 38.38 ? O1 GOL 501 A 1 
HETATM 5 C C2 GOL . A . C 3 14.96 -25.873 27.313 0.5 31.35 ? C2 GOL 501 A 1 
HETATM 6 C C2 GOL . B . C 3 14.997 -25.899 27.288 0.5 42.92 ? C2 GOL 501 A 1 
HETATM 7 O O2 GOL . A . C 3 13.9 -25.266 28.04 0.5 26.88 ? O2 GOL 501 A 1 
HETATM 8 O O2 GOL . B . C 3 13.93 -25.292 28.012 0.5 41.1 ? O2 GOL 501 A 1 
HETATM 9 C C3 GOL . A . C 3 15.967 -24.841 26.859 0.5 26.84 ? C3 GOL 501 A 1 
HETATM 10 C C3 GOL . B . C 3 15.871 -26.784 28.155 0.5 40.09 ? C3 GOL 501 A 1 
HETATM 11 O O3 GOL . A . C 3 16.496 -24.113 27.957 0.5 29.46 ? O3 GOL 501 A 1 
HETATM 12 O O3 GOL . B . C 3 15.507 -26.735 29.532 0.5 41.39 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           12 
#