data_6XBM
#
_model_server_result.job_id            vpeAhk5uUBn1lffkU7SRnQ 
_model_server_result.datetime_utc      '2024-11-22 23:18:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xbm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    6XBM 
#
_exptl.entry_id    6XBM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              400.637 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '17-[3-(3,3-DIMETHYL-OXIRANYL)-1-METHYL-PROPYL]-10,13-DIMETHYL-2,3,4,7,8,9,10,11,12,13,14,15,16,17-TETRADECAHYDRO-1H-CYC LOPENTA[A]PHENANTHREN-3-OL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XBM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 193 R CYS 193 1_555 A SG CYS 213 R CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 217 R CYS 217 1_555 A SG CYS 295 R CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 314 R CYS 314 1_555 A SG CYS 390 R CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C27 H44 O2' 
_chem_comp.formula_weight    400.637 
_chem_comp.id                CO1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '17-[3-(3,3-DIMETHYL-OXIRANYL)-1-METHYL-PROPYL]-10,13-DIMETHYL-2,3,4,7,8,9,10,11,12,13,14,15,16,17-TETRADECAHYDRO-1H-CYC LOPENTA[A]PHENANTHREN-3-OL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     24,25(S)-EPOXYCHOLESTEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O24 C22 CO1 sing 70 n n 
O24 H24 CO1 sing 71 n n 
C22 C18 CO1 sing 72 n n 
C22 C19 CO1 sing 73 n n 
C22 H22 CO1 sing 74 n n 
C18 C14 CO1 sing 75 n n 
C18 H181 CO1 sing 76 n n 
C18 H182 CO1 sing 77 n n 
C14 C9 CO1 doub 78 n n 
C14 C7 CO1 sing 79 n n 
C9 C4 CO1 sing 80 n n 
C9 H9 CO1 sing 81 n n 
C4 C1 CO1 sing 82 n n 
C4 H41 CO1 sing 83 n n 
C4 H42 CO1 sing 84 n n 
C1 C3 CO1 sing 85 n n 
C1 C2 CO1 sing 86 n n 
C1 H1 CO1 sing 87 n n 
C3 C8 CO1 sing 88 n n 
C3 C7 CO1 sing 89 n n 
C3 H3 CO1 sing 90 n n 
C8 C11 CO1 sing 91 n n 
C8 H81 CO1 sing 92 n n 
C8 H82 CO1 sing 93 n n 
C11 C5 CO1 sing 94 n n 
C11 H111 CO1 sing 95 n n 
C11 H112 CO1 sing 96 n n 
C5 C12 CO1 sing 97 n n 
C5 C10 CO1 sing 98 n n 
C5 C2 CO1 sing 99 n n 
C12 H121 CO1 sing 100 n n 
C12 H122 CO1 sing 101 n n 
C12 H123 CO1 sing 102 n n 
C10 C13 CO1 sing 103 n n 
C10 C17 CO1 sing 104 n n 
C10 H10 CO1 sing 105 n n 
C13 C6 CO1 sing 106 n n 
C13 H131 CO1 sing 107 n n 
C13 H132 CO1 sing 108 n n 
C6 C2 CO1 sing 109 n n 
C6 H61 CO1 sing 110 n n 
C6 H62 CO1 sing 111 n n 
C2 H2 CO1 sing 112 n n 
C17 C21 CO1 sing 113 n n 
C17 C20 CO1 sing 114 n n 
C17 H17 CO1 sing 115 n n 
C21 H211 CO1 sing 116 n n 
C21 H212 CO1 sing 117 n n 
C21 H213 CO1 sing 118 n n 
C20 C23 CO1 sing 119 n n 
C20 H201 CO1 sing 120 n n 
C20 H202 CO1 sing 121 n n 
C23 C25 CO1 sing 122 n n 
C23 H231 CO1 sing 123 n n 
C23 H232 CO1 sing 124 n n 
C25 O27 CO1 sing 125 n n 
C25 C26 CO1 sing 126 n n 
C25 H25 CO1 sing 127 n n 
O27 C26 CO1 sing 128 n n 
C26 C28 CO1 sing 129 n n 
C26 C29 CO1 sing 130 n n 
C28 H281 CO1 sing 131 n n 
C28 H282 CO1 sing 132 n n 
C28 H283 CO1 sing 133 n n 
C29 H291 CO1 sing 134 n n 
C29 H292 CO1 sing 135 n n 
C29 H293 CO1 sing 136 n n 
C7 C16 CO1 sing 137 n n 
C7 C15 CO1 sing 138 n n 
C16 H161 CO1 sing 139 n n 
C16 H162 CO1 sing 140 n n 
C16 H163 CO1 sing 141 n n 
C15 C19 CO1 sing 142 n n 
C15 H151 CO1 sing 143 n n 
C15 H152 CO1 sing 144 n n 
C19 H191 CO1 sing 145 n n 
C19 H192 CO1 sing 146 n n 
#
_atom_sites.entry_id                     6XBM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 CO1 R 1 701 1 CO1 CO1 . 
G 6 CO1 R 1 702 2 CO1 CO1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O24 CO1 . . . F 6 98.459 139.862 143.277 1 160.05 ? O24 CO1 701 R 1 
HETATM 2 C C22 CO1 . . . F 6 99.158 139.172 142.214 1 159.86 ? C22 CO1 701 R 1 
HETATM 3 C C18 CO1 . . . F 6 100.522 139.912 142.003 1 159.75 ? C18 CO1 701 R 1 
HETATM 4 C C14 CO1 . . . F 6 101.357 139.191 140.891 1 159.76 ? C14 CO1 701 R 1 
HETATM 5 C C9 CO1 . . . F 6 102.68 138.885 141.074 1 159.62 ? C9 CO1 701 R 1 
HETATM 6 C C4 CO1 . . . F 6 103.587 138.642 139.863 1 159.52 ? C4 CO1 701 R 1 
HETATM 7 C C1 CO1 . . . F 6 102.897 138.008 138.569 1 159.42 ? C1 CO1 701 R 1 
HETATM 8 C C3 CO1 . . . F 6 101.41 137.521 138.845 1 159.6 ? C3 CO1 701 R 1 
HETATM 9 C C8 CO1 . . . F 6 100.678 136.805 137.622 1 159.46 ? C8 CO1 701 R 1 
HETATM 10 C C11 CO1 . . . F 6 101.606 135.78 136.921 1 159.41 ? C11 CO1 701 R 1 
HETATM 11 C C5 CO1 . . . F 6 103.055 136.35 136.591 1 159.32 ? C5 CO1 701 R 1 
HETATM 12 C C12 CO1 . . . F 6 102.889 137.528 135.531 1 159.54 ? C12 CO1 701 R 1 
HETATM 13 C C10 CO1 . . . F 6 104.121 135.243 136.206 1 159.12 ? C10 CO1 701 R 1 
HETATM 14 C C13 CO1 . . . F 6 105.468 135.869 136.657 1 159.28 ? C13 CO1 701 R 1 
HETATM 15 C C6 CO1 . . . F 6 105.14 137.005 137.64 1 159.33 ? C6 CO1 701 R 1 
HETATM 16 C C2 CO1 . . . F 6 103.654 136.783 137.967 1 159.34 ? C2 CO1 701 R 1 
HETATM 17 C C17 CO1 . . . F 6 104.048 134.738 134.67 1 159.06 ? C17 CO1 701 R 1 
HETATM 18 C C21 CO1 . . . F 6 102.969 133.656 134.358 1 159.16 ? C21 CO1 701 R 1 
HETATM 19 C C20 CO1 . . . F 6 105.376 134.339 133.976 1 159.02 ? C20 CO1 701 R 1 
HETATM 20 C C23 CO1 . . . F 6 105.507 134.96 132.587 1 159.12 ? C23 CO1 701 R 1 
HETATM 21 C C25 CO1 . . . F 6 106.518 134.108 131.804 1 159.2 ? C25 CO1 701 R 1 
HETATM 22 O O27 CO1 . . . F 6 107.89 134.368 131.762 1 159.46 ? O27 CO1 701 R 1 
HETATM 23 C C26 CO1 . . . F 6 107.114 134.62 130.531 1 159.13 ? C26 CO1 701 R 1 
HETATM 24 C C28 CO1 . . . F 6 107.268 133.735 129.263 1 158.81 ? C28 CO1 701 R 1 
HETATM 25 C C29 CO1 . . . F 6 106.907 136.069 130.237 1 159.16 ? C29 CO1 701 R 1 
HETATM 26 C C7 CO1 . . . F 6 100.633 138.777 139.495 1 159.88 ? C7 CO1 701 R 1 
HETATM 27 C C16 CO1 . . . F 6 100.702 140.005 138.519 1 160.01 ? C16 CO1 701 R 1 
HETATM 28 C C15 CO1 . . . F 6 99.161 138.309 139.776 1 159.86 ? C15 CO1 701 R 1 
HETATM 29 C C19 CO1 . . . F 6 98.361 139.063 140.861 1 159.82 ? C19 CO1 701 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#